RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 TYMSOSQ8TAI1 123 aa6.5□□□□□ -1.37
LIMCH1-214ENST00000512228 RETNLBQ9BQ08 111 aa6.5□□□□□ -1.37
LIMCH1-214ENST00000512228 ERG28Q9UKR5 140 aa6.49□□□□□ -1.37
LIMCH1-214ENST00000512228 H3BRM9 83 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 M0R378 163 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 HIST1H2BKO60814 126 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 HIST1H2BJP06899 126 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 HIST1H2BOP23527 126 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 HIST1H2BBP33778 126 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 UBE2AP49459 152 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 HIST1H2BDP58876 126 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 HIST1H2BCP62807 126 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 HIST2H2BEQ16778 126 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 NKAPP1Q8N9T2 125 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 HIST1H2BHQ93079 126 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 HIST1H2BNQ99877 126 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 HIST1H2BMQ99879 126 aa6.48□□□□□ -1.37
LIMCH1-214ENST00000512228 SERF1AO75920 110 aa6.47□□□□□ -1.37
LIMCH1-214ENST00000512228 TMEM126AQ9H061 195 aa6.47□□□□□ -1.37
LIMCH1-214ENST00000512228 LEPROTL1O95214 131 aa6.46□□□□□ -1.38
LIMCH1-214ENST00000512228 IFI27L1Q96BM0 104 aa6.46□□□□□ -1.38
LIMCH1-214ENST00000512228 PLEKHB2Q96CS7 222 aa6.46□□□□□ -1.38
LIMCH1-214ENST00000512228 HSPB8Q9UJY1 196 aa6.46□□□□□ -1.38
LIMCH1-214ENST00000512228 A0A0U1RRA0 63 aa6.45□□□□□ -1.38
LIMCH1-214ENST00000512228 COA6Q5JTJ3 125 aaKnown RBP6.45□□□□□ -1.38
LIMCH1-214ENST00000512228 TMEM170BQ5T4T1 132 aa6.45□□□□□ -1.38
LIMCH1-214ENST00000512228 FAM19A1Q7Z5A9 133 aa6.45□□□□□ -1.38
LIMCH1-214ENST00000512228 C3orf22Q8N5N4 141 aa6.45□□□□□ -1.38
LIMCH1-214ENST00000512228 TRAV12-1A0A0B4J245 112 aa6.44□□□□□ -1.38
LIMCH1-214ENST00000512228 COX17Q14061 63 aa6.44□□□□□ -1.38
LIMCH1-214ENST00000512228 FAM229BQ4G0N7 80 aa6.44□□□□□ -1.38
LIMCH1-214ENST00000512228 FAM19A2Q8N3H0 131 aa6.44□□□□□ -1.38
LIMCH1-214ENST00000512228 TMEM223A0PJW6 202 aa6.43□□□□□ -1.38
LIMCH1-214ENST00000512228 LINC00310P59036 64 aa6.43□□□□□ -1.38
LIMCH1-214ENST00000512228 CHTOPQ9Y3Y2 248 aaKnown RBP6.43□□□□□ -1.38
LIMCH1-214ENST00000512228 LINC00304Q8N9R0 145 aa6.42□□□□□ -1.38
LIMCH1-214ENST00000512228 SMIM13P0DJ93 91 aa6.41□□□□□ -1.38
LIMCH1-214ENST00000512228 LINC00158P58513 81 aa6.41□□□□□ -1.38
LIMCH1-214ENST00000512228 RPL24P83731 157 aaKnown RBP6.41□□□□□ -1.38
LIMCH1-214ENST00000512228 MAP1LC3CQ9BXW4 147 aa6.41□□□□□ -1.38
LIMCH1-214ENST00000512228 IGKV2D-26A0A0A0MRZ7 120 aa6.4□□□□□ -1.38
LIMCH1-214ENST00000512228 S100A6P06703 90 aa6.4□□□□□ -1.38
LIMCH1-214ENST00000512228 FABP4P15090 132 aa6.4□□□□□ -1.38
LIMCH1-214ENST00000512228 HIGD2AQ9BW72 106 aa6.4□□□□□ -1.38
LIMCH1-214ENST00000512228 LCE2AQ5TA79 106 aaPredicted RBP6.39□□□□□ -1.39
LIMCH1-214ENST00000512228 IGLV7-46A0A075B6I9 117 aa6.38□□□□□ -1.39
LIMCH1-214ENST00000512228 KRTAP4-16G5E9R7 235 aaPredicted RBP6.38□□□□□ -1.39
LIMCH1-214ENST00000512228 PLNP26678 52 aa6.38□□□□□ -1.39
LIMCH1-214ENST00000512228 AKR1D1P51857 326 aa6.38□□□□□ -1.39
LIMCH1-214ENST00000512228 SFTA2Q6UW10 78 aa6.38□□□□□ -1.39
LIMCH1-214ENST00000512228 SPRR4Q96PI1 79 aa6.38□□□□□ -1.39
LIMCH1-214ENST00000512228 MUC17Q685J3 4493 aa6.38□□□□□ -1.39
LIMCH1-214ENST00000512228 NCR3O14931 201 aa6.37□□□□□ -1.39
LIMCH1-214ENST00000512228 SPRR1AP35321 89 aa6.37□□□□□ -1.39
LIMCH1-214ENST00000512228 TSPEAR-AS2P59090 65 aa6.37□□□□□ -1.39
LIMCH1-214ENST00000512228 BOD1L2Q8IYS8 172 aa6.37□□□□□ -1.39
LIMCH1-214ENST00000512228 MIR7-3HGQ8N6C7 128 aa6.37□□□□□ -1.39
LIMCH1-214ENST00000512228 DAND5Q8N907 189 aa6.37□□□□□ -1.39
LIMCH1-214ENST00000512228 FAT4Q6V0I7 4981 aa6.36□□□□□ -1.39
LIMCH1-214ENST00000512228 H0Y8G0 127 aa6.36□□□□□ -1.39
LIMCH1-214ENST00000512228 S100A2P29034 98 aa6.36□□□□□ -1.39
LIMCH1-214ENST00000512228 PET117Q6UWS5 81 aa6.36□□□□□ -1.39
LIMCH1-214ENST00000512228 SMCR5Q8TEV8 140 aa6.36□□□□□ -1.39
LIMCH1-214ENST00000512228 TRBV10-3A0A0K0K1G6 114 aa6.35□□□□□ -1.39
LIMCH1-214ENST00000512228 SYS1-DBNDD2H3BUS1 97 aa6.35□□□□□ -1.39
LIMCH1-214ENST00000512228 ERC2-IT1O76042 136 aa6.35□□□□□ -1.39
LIMCH1-214ENST00000512228 DPM2O94777 84 aa6.35□□□□□ -1.39
LIMCH1-214ENST00000512228 IGKCP01834 107 aa6.35□□□□□ -1.39
LIMCH1-214ENST00000512228 PPDPFQ9H3Y8 114 aa6.35□□□□□ -1.39
LIMCH1-214ENST00000512228 KCNQ1DNQ9H478 68 aa6.35□□□□□ -1.39
LIMCH1-214ENST00000512228 C20orf202A1L168 122 aa6.34□□□□□ -1.39
LIMCH1-214ENST00000512228 EIF4EBP3O60516 100 aaPredicted RBP6.34□□□□□ -1.39
LIMCH1-214ENST00000512228 HERVK_113P61574 105 aa6.34□□□□□ -1.39
LIMCH1-214ENST00000512228 TPRXLQ17RH7 258 aa6.34□□□□□ -1.39
LIMCH1-214ENST00000512228 MEIG1Q5JSS6 88 aa6.33□□□□□ -1.4
LIMCH1-214ENST00000512228 HIST3H2BBQ8N257 126 aa6.33□□□□□ -1.4
LIMCH1-214ENST00000512228 KRTAP9-2Q9BYQ4 174 aa6.33□□□□□ -1.4
LIMCH1-214ENST00000512228 CDIP1Q9H305 208 aa6.33□□□□□ -1.4
LIMCH1-214ENST00000512228 NDUFA12Q9UI09 145 aa6.33□□□□□ -1.4
LIMCH1-214ENST00000512228 C3orf79P0CE67 100 aa6.32□□□□□ -1.4
LIMCH1-214ENST00000512228 LINC01545Q5VT33 79 aa6.32□□□□□ -1.4
LIMCH1-214ENST00000512228 LINC00337Q8N6G1 96 aa6.32□□□□□ -1.4
LIMCH1-214ENST00000512228 Q8NBF4 154 aa6.32□□□□□ -1.4
LIMCH1-214ENST00000512228 PMCHL2Q9BQD1 86 aa6.32□□□□□ -1.4
LIMCH1-214ENST00000512228 C5orf52A6NGY3 159 aa6.31□□□□□ -1.4
LIMCH1-214ENST00000512228 B5MCH6 92 aa6.31□□□□□ -1.4
LIMCH1-214ENST00000512228 PRYO14603 147 aa6.31□□□□□ -1.4
LIMCH1-214ENST00000512228 KRTDAPP60985 99 aa6.31□□□□□ -1.4
LIMCH1-214ENST00000512228 KRTAP4-1Q9BYQ7 146 aa6.31□□□□□ -1.4
LIMCH1-214ENST00000512228 LOC107984156A0A0G2JMH3 177 aa6.3□□□□□ -1.4
LIMCH1-214ENST00000512228 LINC00587B1AMM8 73 aa6.3□□□□□ -1.4
LIMCH1-214ENST00000512228 SNRPEP62304 92 aaKnown RBP6.3□□□□□ -1.4
LIMCH1-214ENST00000512228 HERV-K104P63124 156 aa6.3□□□□□ -1.4
LIMCH1-214ENST00000512228 LINC00483Q53H64 154 aa6.3□□□□□ -1.4
LIMCH1-214ENST00000512228 ARL17AQ8IVW1 177 aa6.3□□□□□ -1.4
LIMCH1-214ENST00000512228 HIST1H2BLQ99880 126 aa6.3□□□□□ -1.4
LIMCH1-214ENST00000512228 Q9BRP9 147 aa6.3□□□□□ -1.4
LIMCH1-214ENST00000512228 MYMXA0A1B0GTQ4 84 aa6.29□□□□□ -1.4
LIMCH1-214ENST00000512228 LEPROTO15243 131 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms