RNA–Protein interactions for RNA: ENST00000506924.1

CLCN3-205, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 567 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-205ENST00000506924 HIST1H2BCP62807 126 aa5.94□□□□□ -1.46
CLCN3-205ENST00000506924 HIST2H2BEQ16778 126 aa5.94□□□□□ -1.46
CLCN3-205ENST00000506924 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.94□□□□□ -1.46
CLCN3-205ENST00000506924 TMEM170BQ5T4T1 132 aa5.94□□□□□ -1.46
CLCN3-205ENST00000506924 HIST1H2BHQ93079 126 aa5.94□□□□□ -1.46
CLCN3-205ENST00000506924 HIST1H2BNQ99877 126 aa5.94□□□□□ -1.46
CLCN3-205ENST00000506924 HIST1H2BMQ99879 126 aa5.94□□□□□ -1.46
CLCN3-205ENST00000506924 LINC00474Q9P2X8 69 aa5.94□□□□□ -1.46
CLCN3-205ENST00000506924 PKIGQ9Y2B9 76 aa5.94□□□□□ -1.46
CLCN3-205ENST00000506924 SRRM2Q9UQ35 2752 aaKnown RBP5.94□□□□□ -1.46
CLCN3-205ENST00000506924 TRBV30A0A0K0K1B3 111 aa5.93□□□□□ -1.46
CLCN3-205ENST00000506924 FAM168BA1KXE4 195 aa5.93□□□□□ -1.46
CLCN3-205ENST00000506924 KRTAP10-4P60372 401 aaPredicted RBP5.93□□□□□ -1.46
CLCN3-205ENST00000506924 TRAV12-1A0A0B4J245 112 aa5.92□□□□□ -1.46
CLCN3-205ENST00000506924 F8VRH5 84 aa5.92□□□□□ -1.46
CLCN3-205ENST00000506924 S100A1P23297 94 aa5.92□□□□□ -1.46
CLCN3-205ENST00000506924 PMCHL2Q9BQD1 86 aa5.92□□□□□ -1.46
CLCN3-205ENST00000506924 NDUFC2-KCTD14E9PQ53 114 aa5.91□□□□□ -1.46
CLCN3-205ENST00000506924 TLX1NBP0CAT3 122 aa5.91□□□□□ -1.46
CLCN3-205ENST00000506924 PHF5AQ7RTV0 110 aaKnown RBP5.91□□□□□ -1.46
CLCN3-205ENST00000506924 FAM19A5Q7Z5A7 132 aaPredicted RBP5.91□□□□□ -1.46
CLCN3-205ENST00000506924 C7orf33Q8WU49 177 aa5.91□□□□□ -1.46
CLCN3-205ENST00000506924 HSPB8Q9UJY1 196 aa5.91□□□□□ -1.46
CLCN3-205ENST00000506924 CXCL5P42830 114 aa5.9□□□□□ -1.46
CLCN3-205ENST00000506924 HNRNPA3P51991 378 aaKnown RBP5.9□□□□□ -1.46
CLCN3-205ENST00000506924 C9orf129Q5T035 196 aaKnown RBP5.9□□□□□ -1.46
CLCN3-205ENST00000506924 ZNF625Q96I27 306 aaPredicted RBP5.9□□□□□ -1.46
CLCN3-205ENST00000506924 XAGE1AQ9HD64 81 aa5.9□□□□□ -1.46
CLCN3-205ENST00000506924 TMEM223A0PJW6 202 aa5.89□□□□□ -1.47
CLCN3-205ENST00000506924 PFN2P35080 140 aa5.89□□□□□ -1.47
CLCN3-205ENST00000506924 KRTAP7-1Q8IUC3 87 aa5.88□□□□□ -1.47
CLCN3-205ENST00000506924 FLG2Q5D862 2391 aaPredicted RBP5.87□□□□□ -1.47
CLCN3-205ENST00000506924 PRR3P79522 188 aaKnown RBP5.87□□□□□ -1.47
CLCN3-205ENST00000506924 RPL24P83731 157 aaKnown RBP5.87□□□□□ -1.47
CLCN3-205ENST00000506924 KRTAP11-1Q8IUC1 163 aa5.87□□□□□ -1.47
CLCN3-205ENST00000506924 MAP1LC3CQ9BXW4 147 aa5.87□□□□□ -1.47
CLCN3-205ENST00000506924 A0A0U1RRA0 63 aa5.86□□□□□ -1.47
CLCN3-205ENST00000506924 M0QXV9 152 aa5.86□□□□□ -1.47
CLCN3-205ENST00000506924 DPM2O94777 84 aa5.86□□□□□ -1.47
CLCN3-205ENST00000506924 IGKCP01834 107 aa5.85□□□□□ -1.47
CLCN3-205ENST00000506924 PLNP26678 52 aa5.85□□□□□ -1.47
CLCN3-205ENST00000506924 UBE2V1Q13404 147 aa5.85□□□□□ -1.47
CLCN3-205ENST00000506924 SMIM29Q86T20 159 aa5.85□□□□□ -1.47
CLCN3-205ENST00000506924 ERG28Q9UKR5 140 aa5.85□□□□□ -1.47
CLCN3-205ENST00000506924 SYS1-DBNDD2H3BUS1 97 aa5.84□□□□□ -1.47
CLCN3-205ENST00000506924 VPREB1P12018 145 aa5.84□□□□□ -1.47
CLCN3-205ENST00000506924 TSPEAR-AS2P59090 65 aa5.84□□□□□ -1.47
CLCN3-205ENST00000506924 UBE2BP63146 152 aa5.84□□□□□ -1.47
CLCN3-205ENST00000506924 PSORS1C2Q9UIG4 136 aa5.84□□□□□ -1.47
CLCN3-205ENST00000506924 C22orf24Q9Y442 160 aa5.84□□□□□ -1.47
CLCN3-205ENST00000506924 MYCBP2O75592 4640 aa5.83□□□□□ -1.48
CLCN3-205ENST00000506924 LINC00158P58513 81 aa5.83□□□□□ -1.48
CLCN3-205ENST00000506924 KRTDAPP60985 99 aa5.83□□□□□ -1.48
CLCN3-205ENST00000506924 SNRPEP62304 92 aaKnown RBP5.83□□□□□ -1.48
CLCN3-205ENST00000506924 C1orf137Q5JT78 98 aa5.83□□□□□ -1.48
CLCN3-205ENST00000506924 COA6Q5JTJ3 125 aaKnown RBP5.83□□□□□ -1.48
CLCN3-205ENST00000506924 LEPROTO15243 131 aa5.82□□□□□ -1.48
CLCN3-205ENST00000506924 C3orf79P0CE67 100 aa5.82□□□□□ -1.48
CLCN3-205ENST00000506924 SMIM13P0DJ93 91 aa5.82□□□□□ -1.48
CLCN3-205ENST00000506924 SND1-IT1Q9HBX3 110 aa5.82□□□□□ -1.48
CLCN3-205ENST00000506924 NDUFA12Q9UI09 145 aa5.82□□□□□ -1.48
CLCN3-205ENST00000506924 RPL37AP8A6NKH3 93 aa5.81□□□□□ -1.48
CLCN3-205ENST00000506924 MT3P25713 68 aa5.81□□□□□ -1.48
CLCN3-205ENST00000506924 HERVK_113P61574 105 aa5.81□□□□□ -1.48
CLCN3-205ENST00000506924 MEIG1Q5JSS6 88 aa5.81□□□□□ -1.48
CLCN3-205ENST00000506924 MYMXA0A1B0GTQ4 84 aa5.8□□□□□ -1.48
CLCN3-205ENST00000506924 J3QQQ9 107 aa5.8□□□□□ -1.48
CLCN3-205ENST00000506924 COX17Q14061 63 aa5.8□□□□□ -1.48
CLCN3-205ENST00000506924 LINC01545Q5VT33 79 aa5.8□□□□□ -1.48
CLCN3-205ENST00000506924 SFTA2Q6UW10 78 aa5.8□□□□□ -1.48
CLCN3-205ENST00000506924 PET117Q6UWS5 81 aa5.8□□□□□ -1.48
CLCN3-205ENST00000506924 MRPL55Q7Z7F7 128 aaKnown RBP5.8□□□□□ -1.48
CLCN3-205ENST00000506924 Q8NDZ9 215 aa5.8□□□□□ -1.48
CLCN3-205ENST00000506924 PLEKHB2Q96CS7 222 aa5.8□□□□□ -1.48
CLCN3-205ENST00000506924 PKHD1L1Q86WI1 4243 aa5.8□□□□□ -1.48
CLCN3-205ENST00000506924 LRP1Q07954 4544 aaKnown RBP5.79□□□□□ -1.48
CLCN3-205ENST00000506924 LGALS3P17931 250 aaKnown RBP5.79□□□□□ -1.48
CLCN3-205ENST00000506924 LBHQ53QV2 105 aaPredicted RBP5.79□□□□□ -1.48
CLCN3-205ENST00000506924 DAND5Q8N907 189 aa5.79□□□□□ -1.48
CLCN3-205ENST00000506924 NKAPP1Q8N9T2 125 aa5.79□□□□□ -1.48
CLCN3-205ENST00000506924 LINC00167Q96N53 147 aa5.79□□□□□ -1.48
CLCN3-205ENST00000506924 IGLV7-43P04211 117 aa5.78□□□□□ -1.48
CLCN3-205ENST00000506924 HERV-K104P63124 156 aa5.78□□□□□ -1.48
CLCN3-205ENST00000506924 SRSF9Q13242 221 aaKnown RBP eCLIP5.78□□□□□ -1.48
CLCN3-205ENST00000506924 ATOH7Q8N100 152 aa5.78□□□□□ -1.48
CLCN3-205ENST00000506924 HIST3H2BBQ8N257 126 aa5.78□□□□□ -1.48
CLCN3-205ENST00000506924 MIR7-3HGQ8N6C7 128 aa5.78□□□□□ -1.48
CLCN3-205ENST00000506924 IGKV2-28A0A075B6P5 120 aa5.77□□□□□ -1.49
CLCN3-205ENST00000506924 E9PLD3 99 aa5.77□□□□□ -1.49
CLCN3-205ENST00000506924 IGKV2D-28P01615 120 aa5.77□□□□□ -1.49
CLCN3-205ENST00000506924 S100A6P06703 90 aa5.77□□□□□ -1.49
CLCN3-205ENST00000506924 S100A2P29034 98 aa5.77□□□□□ -1.49
CLCN3-205ENST00000506924 SPINK6Q6UWN8 80 aa5.77□□□□□ -1.49
CLCN3-205ENST00000506924 IGKV2D-26A0A0A0MRZ7 120 aa5.76□□□□□ -1.49
CLCN3-205ENST00000506924 HIST1H2BLQ99880 126 aa5.76□□□□□ -1.49
CLCN3-205ENST00000506924 TTTY13Q9BZ97 58 aa5.76□□□□□ -1.49
CLCN3-205ENST00000506924 TP73-AS1Q9UF72 201 aa5.76□□□□□ -1.49
CLCN3-205ENST00000506924 FAT3Q8TDW7 4589 aa5.76□□□□□ -1.49
CLCN3-205ENST00000506924 C20orf202A1L168 122 aa5.75□□□□□ -1.49
CLCN3-205ENST00000506924 OXTP01178 125 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms