RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 FAM30AQ9NZY2 134 aa5.36□□□□□ -1.55
PDGFC-205ENST00000506880 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.36□□□□□ -1.55
PDGFC-205ENST00000506880 RYR1P21817 5038 aa5.36□□□□□ -1.55
PDGFC-205ENST00000506880 MEIG1Q5JSS6 88 aa5.35□□□□□ -1.55
PDGFC-205ENST00000506880 BOD1L2Q8IYS8 172 aa5.35□□□□□ -1.55
PDGFC-205ENST00000506880 DNAH8Q96JB1 4490 aa5.35□□□□□ -1.55
PDGFC-205ENST00000506880 IGKV2-24A0A0C4DH68 120 aa5.34□□□□□ -1.55
PDGFC-205ENST00000506880 C9orf116Q5BN46 136 aaPredicted RBP5.34□□□□□ -1.55
PDGFC-205ENST00000506880 TRBV10-2A0A0K0K1G8 114 aa5.33□□□□□ -1.56
PDGFC-205ENST00000506880 TMEM238C9JI98 176 aa5.33□□□□□ -1.56
PDGFC-205ENST00000506880 NDUFC2O95298 119 aa5.33□□□□□ -1.56
PDGFC-205ENST00000506880 LINC01620Q4KN68 170 aa5.33□□□□□ -1.56
PDGFC-205ENST00000506880 APOBP04114 4563 aaKnown RBP5.33□□□□□ -1.56
PDGFC-205ENST00000506880 HSPG2P98160 4391 aa5.33□□□□□ -1.56
PDGFC-205ENST00000506880 HERC2O95714 4834 aa5.32□□□□□ -1.56
PDGFC-205ENST00000506880 DLEU1O43261 78 aa5.32□□□□□ -1.56
PDGFC-205ENST00000506880 IFITM1P13164 125 aa5.32□□□□□ -1.56
PDGFC-205ENST00000506880 LINC00158P58513 81 aa5.32□□□□□ -1.56
PDGFC-205ENST00000506880 S100A12P80511 92 aa5.32□□□□□ -1.56
PDGFC-205ENST00000506880 JOSD1Q15040 202 aaPredicted RBP5.32□□□□□ -1.56
PDGFC-205ENST00000506880 GAGE2EQ4V326 116 aa5.32□□□□□ -1.56
PDGFC-205ENST00000506880 C9orf129Q5T035 196 aaKnown RBP5.32□□□□□ -1.56
PDGFC-205ENST00000506880 PMCHL2Q9BQD1 86 aa5.32□□□□□ -1.56
PDGFC-205ENST00000506880 MIEN1Q9BRT3 115 aa5.32□□□□□ -1.56
PDGFC-205ENST00000506880 SND1-IT1Q9HBX3 110 aa5.32□□□□□ -1.56
PDGFC-205ENST00000506880 GAGE2DQ9UEU5 116 aa5.32□□□□□ -1.56
PDGFC-205ENST00000506880 ZNF815PA8K554 130 aa5.31□□□□□ -1.56
PDGFC-205ENST00000506880 M0QXV9 152 aa5.31□□□□□ -1.56
PDGFC-205ENST00000506880 CHTF8P0CG12 524 aa5.31□□□□□ -1.56
PDGFC-205ENST00000506880 FUSP35637 526 aaKnown RBP eCLIP5.31□□□□□ -1.56
PDGFC-205ENST00000506880 NKAPP1Q8N9T2 125 aa5.31□□□□□ -1.56
PDGFC-205ENST00000506880 VPS13BQ7Z7G8 4022 aa5.31□□□□□ -1.56
PDGFC-205ENST00000506880 PANO1I0J062 215 aa5.3□□□□□ -1.56
PDGFC-205ENST00000506880 SCGB1D1O95968 90 aa5.3□□□□□ -1.56
PDGFC-205ENST00000506880 PFN2P35080 140 aa5.3□□□□□ -1.56
PDGFC-205ENST00000506880 TSPEAR-AS2P59090 65 aa5.3□□□□□ -1.56
PDGFC-205ENST00000506880 RPL37AP61513 92 aaKnown RBP5.3□□□□□ -1.56
PDGFC-205ENST00000506880 Q5VSD8 79 aa5.3□□□□□ -1.56
PDGFC-205ENST00000506880 MRPL55Q7Z7F7 128 aaKnown RBP5.3□□□□□ -1.56
PDGFC-205ENST00000506880 LINC00518Q8N0U6 118 aa5.3□□□□□ -1.56
PDGFC-205ENST00000506880 SPANXDQ9BXN6 97 aa5.3□□□□□ -1.56
PDGFC-205ENST00000506880 SPANXCQ9NY87 97 aa5.3□□□□□ -1.56
PDGFC-205ENST00000506880 A0A1W2PNN7 141 aa5.29□□□□□ -1.56
PDGFC-205ENST00000506880 M0R378 163 aa5.29□□□□□ -1.56
PDGFC-205ENST00000506880 SMIM13P0DJ93 91 aa5.29□□□□□ -1.56
PDGFC-205ENST00000506880 VPREB1P12018 145 aa5.29□□□□□ -1.56
PDGFC-205ENST00000506880 MIR7-3HGQ8N6C7 128 aa5.29□□□□□ -1.56
PDGFC-205ENST00000506880 SPANXB1Q9NS25 103 aaPredicted RBP5.29□□□□□ -1.56
PDGFC-205ENST00000506880 C22orf24Q9Y442 160 aa5.29□□□□□ -1.56
PDGFC-205ENST00000506880 A6NJY4 79 aa5.28□□□□□ -1.56
PDGFC-205ENST00000506880 PRR3P79522 188 aaKnown RBP5.28□□□□□ -1.56
PDGFC-205ENST00000506880 SCGB1D4Q6XE38 83 aa5.28□□□□□ -1.56
PDGFC-205ENST00000506880 XAGE1AQ9HD64 81 aa5.28□□□□□ -1.56
PDGFC-205ENST00000506880 SRRM2Q9UQ35 2752 aaKnown RBP5.28□□□□□ -1.56
PDGFC-205ENST00000506880 H0Y9J4 135 aa5.27□□□□□ -1.57
PDGFC-205ENST00000506880 COX8AP10176 69 aa5.27□□□□□ -1.57
PDGFC-205ENST00000506880 SPINK6Q6UWN8 80 aa5.27□□□□□ -1.57
PDGFC-205ENST00000506880 FAM19A5Q7Z5A7 132 aaPredicted RBP5.27□□□□□ -1.57
PDGFC-205ENST00000506880 VAMP8Q9BV40 100 aa5.27□□□□□ -1.57
PDGFC-205ENST00000506880 UBE2BP63146 152 aa5.26□□□□□ -1.57
PDGFC-205ENST00000506880 ANKRD39Q53RE8 183 aa5.26□□□□□ -1.57
PDGFC-205ENST00000506880 LITAFQ99732 161 aa5.26□□□□□ -1.57
PDGFC-205ENST00000506880 HIGD1BQ9P298 99 aa5.26□□□□□ -1.57
PDGFC-205ENST00000506880 KIAA1109Q2LD37 5005 aa5.26□□□□□ -1.57
PDGFC-205ENST00000506880 IGLV1-50A0A075B6I6 118 aa5.25□□□□□ -1.57
PDGFC-205ENST00000506880 PRYO14603 147 aa5.25□□□□□ -1.57
PDGFC-205ENST00000506880 KRTAP10-4P60372 401 aaPredicted RBP5.25□□□□□ -1.57
PDGFC-205ENST00000506880 SERTAD4-AS1Q5TG53 156 aa5.25□□□□□ -1.57
PDGFC-205ENST00000506880 KRTAP7-1Q8IUC3 87 aa5.25□□□□□ -1.57
PDGFC-205ENST00000506880 LINC00308Q8TCZ7 52 aa5.25□□□□□ -1.57
PDGFC-205ENST00000506880 KCNQ1DNQ9H478 68 aa5.25□□□□□ -1.57
PDGFC-205ENST00000506880 BCE1O60756 84 aa5.24□□□□□ -1.57
PDGFC-205ENST00000506880 OXTP01178 125 aa5.24□□□□□ -1.57
PDGFC-205ENST00000506880 SMR3BP02814 79 aaPredicted RBP5.24□□□□□ -1.57
PDGFC-205ENST00000506880 RPL28P46779 137 aaKnown RBP5.24□□□□□ -1.57
PDGFC-205ENST00000506880 TAL2Q16559 108 aa5.24□□□□□ -1.57
PDGFC-205ENST00000506880 ATOH7Q8N100 152 aa5.24□□□□□ -1.57
PDGFC-205ENST00000506880 LINC00337Q8N6G1 96 aa5.24□□□□□ -1.57
PDGFC-205ENST00000506880 DIRC1Q969H9 104 aa5.24□□□□□ -1.57
PDGFC-205ENST00000506880 LINC00167Q96N53 147 aa5.24□□□□□ -1.57
PDGFC-205ENST00000506880 TMEM126AQ9H061 195 aa5.24□□□□□ -1.57
PDGFC-205ENST00000506880 PSORS1C2Q9UIG4 136 aa5.24□□□□□ -1.57
PDGFC-205ENST00000506880 FAM168BA1KXE4 195 aa5.23□□□□□ -1.57
PDGFC-205ENST00000506880 IGLV7-43P04211 117 aa5.23□□□□□ -1.57
PDGFC-205ENST00000506880 SMIM6P0DI80 62 aa5.23□□□□□ -1.57
PDGFC-205ENST00000506880 SRSF9Q13242 221 aaKnown RBP eCLIP5.23□□□□□ -1.57
PDGFC-205ENST00000506880 SLC25A34Q6PIV7 304 aa5.23□□□□□ -1.57
PDGFC-205ENST00000506880 REG3GQ6UW15 175 aa5.23□□□□□ -1.57
PDGFC-205ENST00000506880 PHF5AQ7RTV0 110 aaKnown RBP5.23□□□□□ -1.57
PDGFC-205ENST00000506880 TRAV13-2A0A0B4J235 113 aa5.22□□□□□ -1.57
PDGFC-205ENST00000506880 TRBV7-6A0A0J9YX20 115 aa5.22□□□□□ -1.57
PDGFC-205ENST00000506880 ZNF861PO60384 105 aa5.22□□□□□ -1.57
PDGFC-205ENST00000506880 IGLV6-57P01721 117 aa5.22□□□□□ -1.57
PDGFC-205ENST00000506880 INAFM2P0DMQ5 153 aa5.22□□□□□ -1.57
PDGFC-205ENST00000506880 SPRR1AP35321 89 aa5.22□□□□□ -1.57
PDGFC-205ENST00000506880 HNRNPA3P51991 378 aaKnown RBP5.22□□□□□ -1.57
PDGFC-205ENST00000506880 SPATA45Q537H7 98 aa5.22□□□□□ -1.57
PDGFC-205ENST00000506880 PYY3Q5JQD4 70 aa5.22□□□□□ -1.57
PDGFC-205ENST00000506880 ADAMTSL4-AS1Q5T5F5 129 aa5.22□□□□□ -1.57
PDGFC-205ENST00000506880 PCP2Q8IVA1 136 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms