RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 C9orf129Q5T035 196 aaKnown RBP5.21□□□□□ -1.58
LIMCH1-206ENST00000505705 MIR7-3HGQ8N6C7 128 aa5.21□□□□□ -1.58
LIMCH1-206ENST00000505705 PKHD1P08F94 4074 aa5.21□□□□□ -1.58
LIMCH1-206ENST00000505705 A0A1W2PNN7 141 aa5.2□□□□□ -1.58
LIMCH1-206ENST00000505705 FAM168BA1KXE4 195 aa5.2□□□□□ -1.58
LIMCH1-206ENST00000505705 LCE3BQ5TA77 95 aa5.2□□□□□ -1.58
LIMCH1-206ENST00000505705 C7orf33Q8WU49 177 aa5.2□□□□□ -1.58
LIMCH1-206ENST00000505705 MIEN1Q9BRT3 115 aa5.2□□□□□ -1.58
LIMCH1-206ENST00000505705 VAMP8Q9BV40 100 aa5.2□□□□□ -1.58
LIMCH1-206ENST00000505705 SND1-IT1Q9HBX3 110 aa5.2□□□□□ -1.58
LIMCH1-206ENST00000505705 PLAC8Q9NZF1 115 aa5.2□□□□□ -1.58
LIMCH1-206ENST00000505705 PAM16Q9Y3D7 125 aa5.2□□□□□ -1.58
LIMCH1-206ENST00000505705 NPC2P61916 151 aa5.19□□□□□ -1.58
LIMCH1-206ENST00000505705 UBE2BP63146 152 aa5.19□□□□□ -1.58
LIMCH1-206ENST00000505705 RPL24P83731 157 aaKnown RBP5.19□□□□□ -1.58
LIMCH1-206ENST00000505705 SPATA45Q537H7 98 aa5.19□□□□□ -1.58
LIMCH1-206ENST00000505705 PCP2Q8IVA1 136 aa5.19□□□□□ -1.58
LIMCH1-206ENST00000505705 DAND5Q8N907 189 aa5.19□□□□□ -1.58
LIMCH1-206ENST00000505705 NKAPP1Q8N9T2 125 aa5.19□□□□□ -1.58
LIMCH1-206ENST00000505705 TMEM238C9JI98 176 aa5.18□□□□□ -1.58
LIMCH1-206ENST00000505705 M0QXV9 152 aa5.18□□□□□ -1.58
LIMCH1-206ENST00000505705 S100A12P80511 92 aa5.18□□□□□ -1.58
LIMCH1-206ENST00000505705 PYY3Q5JQD4 70 aa5.18□□□□□ -1.58
LIMCH1-206ENST00000505705 PHF5AQ7RTV0 110 aaKnown RBP5.18□□□□□ -1.58
LIMCH1-206ENST00000505705 C22orf24Q9Y442 160 aa5.18□□□□□ -1.58
LIMCH1-206ENST00000505705 DNAH8Q96JB1 4490 aa5.18□□□□□ -1.58
LIMCH1-206ENST00000505705 TIMM17BO60830 172 aa5.17□□□□□ -1.58
LIMCH1-206ENST00000505705 LBHQ53QV2 105 aaPredicted RBP5.17□□□□□ -1.58
LIMCH1-206ENST00000505705 SERTAD4-AS1Q5TG53 156 aa5.17□□□□□ -1.58
LIMCH1-206ENST00000505705 BOD1L2Q8IYS8 172 aa5.17□□□□□ -1.58
LIMCH1-206ENST00000505705 C14orf144Q96I85 54 aa5.17□□□□□ -1.58
LIMCH1-206ENST00000505705 RYR1P21817 5038 aa5.16□□□□□ -1.58
LIMCH1-206ENST00000505705 EPM2AB3EWF7 344 aa5.16□□□□□ -1.58
LIMCH1-206ENST00000505705 COX8AP10176 69 aa5.16□□□□□ -1.58
LIMCH1-206ENST00000505705 SRSF9Q13242 221 aaKnown RBP eCLIP5.16□□□□□ -1.58
LIMCH1-206ENST00000505705 ADAMTSL4-AS1Q5T5F5 129 aa5.16□□□□□ -1.58
LIMCH1-206ENST00000505705 MRPL55Q7Z7F7 128 aaKnown RBP5.16□□□□□ -1.58
LIMCH1-206ENST00000505705 COPS9Q8WXC6 57 aa5.16□□□□□ -1.58
LIMCH1-206ENST00000505705 PLA2G2DQ9UNK4 145 aa5.16□□□□□ -1.58
LIMCH1-206ENST00000505705 GAGE10A6NGK3 116 aa5.15□□□□□ -1.59
LIMCH1-206ENST00000505705 PLA2G1BP04054 148 aaKnown RBP5.15□□□□□ -1.59
LIMCH1-206ENST00000505705 RPL37AP61513 92 aaKnown RBP5.15□□□□□ -1.59
LIMCH1-206ENST00000505705 Q5VSD8 79 aa5.15□□□□□ -1.59
LIMCH1-206ENST00000505705 Q8N1X5 172 aa5.15□□□□□ -1.59
LIMCH1-206ENST00000505705 KIAA1109Q2LD37 5005 aa5.15□□□□□ -1.59
LIMCH1-206ENST00000505705 RPL37AP8A6NKH3 93 aa5.14□□□□□ -1.59
LIMCH1-206ENST00000505705 NCR3O14931 201 aa5.14□□□□□ -1.59
LIMCH1-206ENST00000505705 VPREB1P12018 145 aa5.14□□□□□ -1.59
LIMCH1-206ENST00000505705 SLC25A34Q6PIV7 304 aa5.14□□□□□ -1.59
LIMCH1-206ENST00000505705 LINC00308Q8TCZ7 52 aa5.14□□□□□ -1.59
LIMCH1-206ENST00000505705 LINC00167Q96N53 147 aa5.14□□□□□ -1.59
LIMCH1-206ENST00000505705 SPANXDQ9BXN6 97 aa5.14□□□□□ -1.59
LIMCH1-206ENST00000505705 SPANXCQ9NY87 97 aa5.14□□□□□ -1.59
LIMCH1-206ENST00000505705 TP73-AS1Q9UF72 201 aa5.14□□□□□ -1.59
LIMCH1-206ENST00000505705 APOBP04114 4563 aaKnown RBP5.14□□□□□ -1.59
LIMCH1-206ENST00000505705 IGLV5-37A0A075B6J1 123 aa5.13□□□□□ -1.59
LIMCH1-206ENST00000505705 M0R378 163 aa5.13□□□□□ -1.59
LIMCH1-206ENST00000505705 IFITM1P13164 125 aa5.13□□□□□ -1.59
LIMCH1-206ENST00000505705 PRR3P79522 188 aaKnown RBP5.13□□□□□ -1.59
LIMCH1-206ENST00000505705 Q6ZVH6 145 aa5.13□□□□□ -1.59
LIMCH1-206ENST00000505705 KRTAP7-1Q8IUC3 87 aa5.13□□□□□ -1.59
LIMCH1-206ENST00000505705 HIST1H4GQ99525 98 aa5.13□□□□□ -1.59
LIMCH1-206ENST00000505705 LITAFQ99732 161 aa5.13□□□□□ -1.59
LIMCH1-206ENST00000505705 IGKV2-28A0A075B6P5 120 aa5.12□□□□□ -1.59
LIMCH1-206ENST00000505705 LOC107984156A0A0G2JMH3 177 aa5.12□□□□□ -1.59
LIMCH1-206ENST00000505705 LOC105371267A0A1B0GV96 52 aa5.12□□□□□ -1.59
LIMCH1-206ENST00000505705 DLEU1O43261 78 aa5.12□□□□□ -1.59
LIMCH1-206ENST00000505705 EIF4EBP3O60516 100 aaPredicted RBP5.12□□□□□ -1.59
LIMCH1-206ENST00000505705 IGKV2D-28P01615 120 aa5.12□□□□□ -1.59
LIMCH1-206ENST00000505705 C1orf137Q5JT78 98 aa5.12□□□□□ -1.59
LIMCH1-206ENST00000505705 S100A7L2Q5SY68 101 aa5.12□□□□□ -1.59
LIMCH1-206ENST00000505705 KRTAP19-1Q8IUB9 90 aa5.12□□□□□ -1.59
LIMCH1-206ENST00000505705 MUSTN1Q8IVN3 82 aa5.12□□□□□ -1.59
LIMCH1-206ENST00000505705 ARL17AQ8IVW1 177 aa5.12□□□□□ -1.59
LIMCH1-206ENST00000505705 NDUFC2O95298 119 aa5.11□□□□□ -1.59
LIMCH1-206ENST00000505705 SMIM6P0DI80 62 aa5.11□□□□□ -1.59
LIMCH1-206ENST00000505705 SOSTDC1Q6X4U4 206 aa5.11□□□□□ -1.59
LIMCH1-206ENST00000505705 Q8NDZ9 215 aa5.11□□□□□ -1.59
LIMCH1-206ENST00000505705 OR13C6PQ8NH95 151 aa5.11□□□□□ -1.59
LIMCH1-206ENST00000505705 SPANXB1Q9NS25 103 aaPredicted RBP5.11□□□□□ -1.59
LIMCH1-206ENST00000505705 PSORS1C2Q9UIG4 136 aa5.11□□□□□ -1.59
LIMCH1-206ENST00000505705 IGLV1-50A0A075B6I6 118 aa5.1□□□□□ -1.59
LIMCH1-206ENST00000505705 LINC00518Q8N0U6 118 aa5.1□□□□□ -1.59
LIMCH1-206ENST00000505705 TRBV10-2A0A0K0K1G8 114 aa5.09□□□□□ -1.59
LIMCH1-206ENST00000505705 DDTP30046 118 aa5.09□□□□□ -1.59
LIMCH1-206ENST00000505705 UQCR10Q9UDW1 63 aa5.09□□□□□ -1.59
LIMCH1-206ENST00000505705 TRBV10-3A0A0K0K1G6 114 aa5.08□□□□□ -1.6
LIMCH1-206ENST00000505705 A6NDN8 102 aa5.08□□□□□ -1.6
LIMCH1-206ENST00000505705 UBE2AP49459 152 aa5.08□□□□□ -1.6
LIMCH1-206ENST00000505705 REG3GQ6UW15 175 aa5.08□□□□□ -1.6
LIMCH1-206ENST00000505705 KRTAP11-1Q8IUC1 163 aa5.08□□□□□ -1.6
LIMCH1-206ENST00000505705 PRO1933Q9H354 126 aa5.08□□□□□ -1.6
LIMCH1-206ENST00000505705 HIGD1BQ9P298 99 aa5.08□□□□□ -1.6
LIMCH1-206ENST00000505705 HSPG2P98160 4391 aa5.08□□□□□ -1.6
LIMCH1-206ENST00000505705 HNRNPA3P51991 378 aaKnown RBP5.07□□□□□ -1.6
LIMCH1-206ENST00000505705 FAM19A1Q7Z5A9 133 aa5.07□□□□□ -1.6
LIMCH1-206ENST00000505705 C12orf57Q99622 126 aa5.07□□□□□ -1.6
LIMCH1-206ENST00000505705 TMEM126AQ9H061 195 aa5.07□□□□□ -1.6
LIMCH1-206ENST00000505705 CBY1Q9Y3M2 126 aa5.07□□□□□ -1.6
LIMCH1-206ENST00000505705 TRAV13-2A0A0B4J235 113 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms