RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 FAM19A1Q7Z5A9 133 aa11.25□□□□□ -0.61
CCDC88B-210ENST00000494566 UNQ6190/PRO20217Q6UXQ8 127 aa11.24□□□□□ -0.61
CCDC88B-210ENST00000494566 Q8IZM0 81 aa11.24□□□□□ -0.61
CCDC88B-210ENST00000494566 LINC01561Q8N1V8 128 aa11.24□□□□□ -0.61
CCDC88B-210ENST00000494566 IMUPQ9GZP8 106 aa11.24□□□□□ -0.61
CCDC88B-210ENST00000494566 UQCRQO14949 82 aa11.23□□□□□ -0.61
CCDC88B-210ENST00000494566 KIAA0087Q14695 138 aa11.23□□□□□ -0.61
CCDC88B-210ENST00000494566 S100A7L2Q5SY68 101 aa11.23□□□□□ -0.61
CCDC88B-210ENST00000494566 XAGE1AQ9HD64 81 aa11.23□□□□□ -0.61
CCDC88B-210ENST00000494566 M0R2N4 97 aa11.23□□□□□ -0.61
CCDC88B-210ENST00000494566 SPART-AS1P0CW21 52 aa11.23□□□□□ -0.61
CCDC88B-210ENST00000494566 CD164L2Q6UWJ8 174 aa11.23□□□□□ -0.61
CCDC88B-210ENST00000494566 KLK12Q9UKR0 248 aa11.23□□□□□ -0.61
CCDC88B-210ENST00000494566 CMYA5Q8N3K9 4069 aa11.23□□□□□ -0.61
CCDC88B-210ENST00000494566 MIFP14174 115 aa11.22□□□□□ -0.61
CCDC88B-210ENST00000494566 RPL18AQ02543 176 aaKnown RBP11.22□□□□□ -0.61
CCDC88B-210ENST00000494566 ENHOQ6UWT2 76 aa11.22□□□□□ -0.61
CCDC88B-210ENST00000494566 COX7CP15954 63 aa11.22□□□□□ -0.61
CCDC88B-210ENST00000494566 C2orf48Q96LS8 159 aa11.21□□□□□ -0.62
CCDC88B-210ENST00000494566 Q8N814 137 aa11.2□□□□□ -0.62
CCDC88B-210ENST00000494566 USP17L23D6RBM5 183 aa11.19□□□□□ -0.62
CCDC88B-210ENST00000494566 BAHCC1Q9P281 2608 aa11.19□□□□□ -0.62
CCDC88B-210ENST00000494566 LAMTOR3Q9UHA4 124 aa11.19□□□□□ -0.62
CCDC88B-210ENST00000494566 KRTAP10-11P60412 298 aa11.18□□□□□ -0.62
CCDC88B-210ENST00000494566 DSCR8Q96T75 97 aa11.18□□□□□ -0.62
CCDC88B-210ENST00000494566 TMEM126AQ9H061 195 aa11.18□□□□□ -0.62
CCDC88B-210ENST00000494566 SCXQ7RTU7 201 aa11.18□□□□□ -0.62
CCDC88B-210ENST00000494566 ATOX1O00244 68 aa11.15□□□□□ -0.62
CCDC88B-210ENST00000494566 LELP1Q5T871 98 aa11.15□□□□□ -0.62
CCDC88B-210ENST00000494566 CCKP06307 115 aa11.15□□□□□ -0.63
CCDC88B-210ENST00000494566 HAMPP81172 84 aa11.15□□□□□ -0.63
CCDC88B-210ENST00000494566 SPAG11BQ08648 103 aa11.15□□□□□ -0.63
CCDC88B-210ENST00000494566 HIGD2BQ4VC39 106 aa11.15□□□□□ -0.63
CCDC88B-210ENST00000494566 COL6A5A8TX70 2615 aa11.14□□□□□ -0.63
CCDC88B-210ENST00000494566 LYPD5Q6UWN5 251 aa11.13□□□□□ -0.63
CCDC88B-210ENST00000494566 WFDC10BQ8IUB3 73 aa11.13□□□□□ -0.63
CCDC88B-210ENST00000494566 CYSRT1A8MQ03 144 aa11.13□□□□□ -0.63
CCDC88B-210ENST00000494566 Q6JHZ5 121 aa11.13□□□□□ -0.63
CCDC88B-210ENST00000494566 Q6ZTC4 211 aa11.13□□□□□ -0.63
CCDC88B-210ENST00000494566 GHRHP01286 108 aa11.12□□□□□ -0.63
CCDC88B-210ENST00000494566 NBEAL1Q6ZS30 2694 aa11.12□□□□□ -0.63
CCDC88B-210ENST00000494566 OBSCN-AS1Q96MR7 158 aa11.12□□□□□ -0.63
CCDC88B-210ENST00000494566 Q6ZQY7 126 aa11.12□□□□□ -0.63
CCDC88B-210ENST00000494566 KPRPQ5T749 579 aaPredicted RBP11.1□□□□□ -0.63
CCDC88B-210ENST00000494566 KRTAP24-1Q3LI83 254 aa11.09□□□□□ -0.63
CCDC88B-210ENST00000494566 TMEM256-PLSCR3K7ERE1 68 aa11.09□□□□□ -0.63
CCDC88B-210ENST00000494566 FAM19A5Q7Z5A7 132 aaPredicted RBP11.08□□□□□ -0.63
CCDC88B-210ENST00000494566 C20orf197Q8N268 126 aa11.08□□□□□ -0.63
CCDC88B-210ENST00000494566 SERP2Q8N6R1 65 aa11.08□□□□□ -0.64
CCDC88B-210ENST00000494566 UPK3BQ9BT76 320 aa11.08□□□□□ -0.64
CCDC88B-210ENST00000494566 PRR34Q9NV39 138 aa11.08□□□□□ -0.64
CCDC88B-210ENST00000494566 TRBV10-3A0A0K0K1G6 114 aa11.07□□□□□ -0.64
CCDC88B-210ENST00000494566 WIPF1O43516 503 aa11.07□□□□□ -0.64
CCDC88B-210ENST00000494566 PRB2P02812 416 aaPredicted RBP11.06□□□□□ -0.64
CCDC88B-210ENST00000494566 COX17Q14061 63 aa11.06□□□□□ -0.64
CCDC88B-210ENST00000494566 RBM3P98179 157 aaKnown RBP11.06□□□□□ -0.64
CCDC88B-210ENST00000494566 LINC00575Q6W349 94 aa11.05□□□□□ -0.64
CCDC88B-210ENST00000494566 UBL5Q9BZL1 73 aa11.05□□□□□ -0.64
CCDC88B-210ENST00000494566 CRYGAP11844 174 aa11.05□□□□□ -0.64
CCDC88B-210ENST00000494566 A0A0J9YWU9 116 aa11.05□□□□□ -0.64
CCDC88B-210ENST00000494566 JMJD7-PLA2G4BH0Y9G9 81 aa11.04□□□□□ -0.64
CCDC88B-210ENST00000494566 OXTP01178 125 aa11.04□□□□□ -0.64
CCDC88B-210ENST00000494566 C6orf48Q9UBA6 75 aa11.04□□□□□ -0.64
CCDC88B-210ENST00000494566 CSMD3Q7Z407 3707 aa11.04□□□□□ -0.64
CCDC88B-210ENST00000494566 SNURFQ9Y675 71 aa11.03□□□□□ -0.64
CCDC88B-210ENST00000494566 NDUFC2O95298 119 aa11.03□□□□□ -0.64
CCDC88B-210ENST00000494566 ESRGQ1W209 222 aa11.02□□□□□ -0.65
CCDC88B-210ENST00000494566 Q8N9L7 120 aa11.02□□□□□ -0.65
CCDC88B-210ENST00000494566 J3KT08 172 aa11.02□□□□□ -0.65
CCDC88B-210ENST00000494566 TRAV10A0A0B4J240 114 aa11.01□□□□□ -0.65
CCDC88B-210ENST00000494566 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.01□□□□□ -0.65
CCDC88B-210ENST00000494566 DNAH3Q8TD57 4116 aa11□□□□□ -0.65
CCDC88B-210ENST00000494566 Q6ZQT0 140 aa10.99□□□□□ -0.65
CCDC88B-210ENST00000494566 DEFB105AQ8NG35 78 aa10.99□□□□□ -0.65
CCDC88B-210ENST00000494566 DPH3Q96FX2 82 aa10.98□□□□□ -0.65
CCDC88B-210ENST00000494566 LINC00167Q96N53 147 aa10.98□□□□□ -0.65
CCDC88B-210ENST00000494566 ZNF561-AS1K7EIQ3 104 aa10.97□□□□□ -0.65
CCDC88B-210ENST00000494566 Q6ZVQ6 151 aa10.97□□□□□ -0.65
CCDC88B-210ENST00000494566 CAMK2N2Q96S95 79 aa10.97□□□□□ -0.65
CCDC88B-210ENST00000494566 LYSTQ99698 3801 aa10.97□□□□□ -0.65
CCDC88B-210ENST00000494566 MGAM2Q2M2H8 2515 aa10.96□□□□□ -0.65
CCDC88B-210ENST00000494566 DEFB131BA0A096LNP1 70 aa10.96□□□□□ -0.65
CCDC88B-210ENST00000494566 LINC01547P58512 204 aaPredicted RBP10.96□□□□□ -0.65
CCDC88B-210ENST00000494566 C4orf26Q17RF5 130 aa10.96□□□□□ -0.66
CCDC88B-210ENST00000494566 Q6ZRU5 148 aa10.95□□□□□ -0.66
CCDC88B-210ENST00000494566 KRTAP26-1Q6PEX3 210 aa10.95□□□□□ -0.66
CCDC88B-210ENST00000494566 IGKV2D-24A0A075B6R9 120 aa10.95□□□□□ -0.66
CCDC88B-210ENST00000494566 C15orf56Q8N910 161 aa10.94□□□□□ -0.66
CCDC88B-210ENST00000494566 C11orf45Q8TAV5 145 aa10.94□□□□□ -0.66
CCDC88B-210ENST00000494566 EGFEM1PQ0D2K5 195 aa10.94□□□□□ -0.66
CCDC88B-210ENST00000494566 MRAPQ8TCY5 172 aa10.94□□□□□ -0.66
CCDC88B-210ENST00000494566 DIRC1Q969H9 104 aa10.94□□□□□ -0.66
CCDC88B-210ENST00000494566 RMI2Q96E14 147 aa10.93□□□□□ -0.66
CCDC88B-210ENST00000494566 ZNF73O43830 326 aaPredicted RBP10.92□□□□□ -0.66
CCDC88B-210ENST00000494566 IGLV6-57P01721 117 aa10.92□□□□□ -0.66
CCDC88B-210ENST00000494566 HUWE1Q7Z6Z7 4374 aaKnown RBP10.92□□□□□ -0.66
CCDC88B-210ENST00000494566 C3orf84H3BNL1 204 aa10.91□□□□□ -0.66
CCDC88B-210ENST00000494566 HRCT1Q6UXD1 115 aa10.91□□□□□ -0.66
CCDC88B-210ENST00000494566 MUC7Q8TAX7 377 aa10.91□□□□□ -0.66
CCDC88B-210ENST00000494566 C1orf43Q9BWL3 253 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms