RNA–Protein interactions for RNA: ENST00000488058.1

RNF38-208, Transcript of ring finger protein 38, human

TSL 3

Gene RNF38, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF38-208	ENST00000488058	HSPB8	Q9UJY1	196 aa		14.24	□□□□□ -0.13
RNF38-208	ENST00000488058	MEIG1	Q5JSS6	88 aa		14.23	□□□□□ -0.13
RNF38-208	ENST00000488058	ATP6V1G1	O75348	118 aa		14.22	□□□□□ -0.13
RNF38-208	ENST00000488058	UBE2A	P49459	152 aa		14.22	□□□□□ -0.13
RNF38-208	ENST00000488058	SMIM13	P0DJ93	91 aa		14.2	□□□□□ -0.14
RNF38-208	ENST00000488058		Q8NDZ9	215 aa		14.2	□□□□□ -0.14
RNF38-208	ENST00000488058	PMCHL2	Q9BQD1	86 aa		14.19	□□□□□ -0.14
RNF38-208	ENST00000488058	NDUFA12	Q9UI09	145 aa		14.19	□□□□□ -0.14
RNF38-208	ENST00000488058	PLN	P26678	52 aa		14.18	□□□□□ -0.14
RNF38-208	ENST00000488058	HERV-K104	P63124	156 aa		14.18	□□□□□ -0.14
RNF38-208	ENST00000488058	RPL13A	P40429	203 aa	Known RBP	14.17	□□□□□ -0.14
RNF38-208	ENST00000488058	MYMX	A0A1B0GTQ4	84 aa		14.16	□□□□□ -0.14
RNF38-208	ENST00000488058	TMEM238	C9JI98	176 aa		14.16	□□□□□ -0.14
RNF38-208	ENST00000488058	DPM2	O94777	84 aa		14.16	□□□□□ -0.14
RNF38-208	ENST00000488058	FAM19A1	Q7Z5A9	133 aa		14.15	□□□□□ -0.14
RNF38-208	ENST00000488058	MIR7-3HG	Q8N6C7	128 aa		14.15	□□□□□ -0.14
RNF38-208	ENST00000488058	TMEM126A	Q9H061	195 aa		14.15	□□□□□ -0.14
RNF38-208	ENST00000488058	LEPROT	O15243	131 aa		14.14	□□□□□ -0.15
RNF38-208	ENST00000488058	TSPEAR-AS2	P59090	65 aa		14.14	□□□□□ -0.15
RNF38-208	ENST00000488058	HERVK_113	P61574	105 aa		14.14	□□□□□ -0.15
RNF38-208	ENST00000488058	MAP1LC3C	Q9BXW4	147 aa		14.14	□□□□□ -0.15
RNF38-208	ENST00000488058	IGKC	P01834	107 aa		14.13	□□□□□ -0.15
RNF38-208	ENST00000488058	PRLH	P81277	87 aa		14.13	□□□□□ -0.15
RNF38-208	ENST00000488058	PLEKHB2	Q96CS7	222 aa		14.13	□□□□□ -0.15
RNF38-208	ENST00000488058	LINC00587	B1AMM8	73 aa		14.12	□□□□□ -0.15
RNF38-208	ENST00000488058	KRTAP13-1	Q8IUC0	172 aa		14.12	□□□□□ -0.15
RNF38-208	ENST00000488058	BOD1L2	Q8IYS8	172 aa		14.12	□□□□□ -0.15
RNF38-208	ENST00000488058	HIST1H2BK	O60814	126 aa		14.11	□□□□□ -0.15
RNF38-208	ENST00000488058	HIST1H2BJ	P06899	126 aa		14.11	□□□□□ -0.15
RNF38-208	ENST00000488058	HIST1H2BO	P23527	126 aa		14.11	□□□□□ -0.15
RNF38-208	ENST00000488058	HIST1H2BB	P33778	126 aa		14.11	□□□□□ -0.15
RNF38-208	ENST00000488058	HIST1H2BD	P58876	126 aa		14.11	□□□□□ -0.15
RNF38-208	ENST00000488058	HIST1H2BC	P62807	126 aa		14.11	□□□□□ -0.15
RNF38-208	ENST00000488058	HIST2H2BE	Q16778	126 aa		14.11	□□□□□ -0.15
RNF38-208	ENST00000488058	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	14.11	□□□□□ -0.15
RNF38-208	ENST00000488058	HIST1H2BH	Q93079	126 aa		14.11	□□□□□ -0.15
RNF38-208	ENST00000488058	HIST1H2BN	Q99877	126 aa		14.11	□□□□□ -0.15
RNF38-208	ENST00000488058	HIST1H2BM	Q99879	126 aa		14.11	□□□□□ -0.15
RNF38-208	ENST00000488058		M0R378	163 aa		14.1	□□□□□ -0.15
RNF38-208	ENST00000488058		J3QQQ9	107 aa		14.09	□□□□□ -0.15
RNF38-208	ENST00000488058	NCR3	O14931	201 aa		14.09	□□□□□ -0.15
RNF38-208	ENST00000488058	LGALS3	P17931	250 aa	Known RBP	14.08	□□□□□ -0.16
RNF38-208	ENST00000488058	ANAPC11	Q9NYG5	84 aa		14.08	□□□□□ -0.16
RNF38-208	ENST00000488058		A0A087X002	238 aa		14.07	□□□□□ -0.16
RNF38-208	ENST00000488058	CRYGA	P11844	174 aa		14.07	□□□□□ -0.16
RNF38-208	ENST00000488058	UBR4	Q5T4S7	5183 aa		14.07	□□□□□ -0.16
RNF38-208	ENST00000488058	DAND5	Q8N907	189 aa		14.06	□□□□□ -0.16
RNF38-208	ENST00000488058	TYMSOS	Q8TAI1	123 aa		14.04	□□□□□ -0.16
RNF38-208	ENST00000488058	SYS1-DBNDD2	H3BUS1	97 aa		14.03	□□□□□ -0.16
RNF38-208	ENST00000488058	NMU	P48645	174 aa		14.03	□□□□□ -0.16
RNF38-208	ENST00000488058	HIGD2A	Q9BW72	106 aa		14.02	□□□□□ -0.17
RNF38-208	ENST00000488058	IGKV2D-26	A0A0A0MRZ7	120 aa		13.99	□□□□□ -0.17
RNF38-208	ENST00000488058	PRY	O14603	147 aa		13.99	□□□□□ -0.17
RNF38-208	ENST00000488058	TSPAN13	O95857	204 aa		13.99	□□□□□ -0.17
RNF38-208	ENST00000488058	MIEN1	Q9BRT3	115 aa		13.98	□□□□□ -0.17
RNF38-208	ENST00000488058	TRBV10-3	A0A0K0K1G6	114 aa		13.97	□□□□□ -0.17
RNF38-208	ENST00000488058		E9PLD3	99 aa		13.97	□□□□□ -0.17
RNF38-208	ENST00000488058	FAM229B	Q4G0N7	80 aa		13.97	□□□□□ -0.17
RNF38-208	ENST00000488058	KRTAP13-2	Q52LG2	175 aa		13.96	□□□□□ -0.17
RNF38-208	ENST00000488058	LRP2	P98164	4655 aa		13.96	□□□□□ -0.18
RNF38-208	ENST00000488058	PET117	Q6UWS5	81 aa		13.95	□□□□□ -0.18
RNF38-208	ENST00000488058	NPC2	P61916	151 aa		13.94	□□□□□ -0.18
RNF38-208	ENST00000488058	S100A12	P80511	92 aa		13.94	□□□□□ -0.18
RNF38-208	ENST00000488058	LINC01545	Q5VT33	79 aa		13.94	□□□□□ -0.18
RNF38-208	ENST00000488058	KCNQ1DN	Q9H478	68 aa		13.94	□□□□□ -0.18
RNF38-208	ENST00000488058	LOC107984156	A0A0G2JMH3	177 aa		13.93	□□□□□ -0.18
RNF38-208	ENST00000488058		A0A0J9YXY3	114 aa		13.93	□□□□□ -0.18
RNF38-208	ENST00000488058	ETDC	A0A1B0GVM5	59 aa		13.93	□□□□□ -0.18
RNF38-208	ENST00000488058	PRR4	Q16378	134 aa		13.93	□□□□□ -0.18
RNF38-208	ENST00000488058	ARL17A	Q8IVW1	177 aa		13.93	□□□□□ -0.18
RNF38-208	ENST00000488058	C3orf79	P0CE67	100 aa		13.91	□□□□□ -0.18
RNF38-208	ENST00000488058	DDT	P30046	118 aa		13.91	□□□□□ -0.18
RNF38-208	ENST00000488058	LINC00337	Q8N6G1	96 aa		13.91	□□□□□ -0.18
RNF38-208	ENST00000488058	SPRR1A	P35321	89 aa		13.9	□□□□□ -0.18
RNF38-208	ENST00000488058	KRTDAP	P60985	99 aa		13.9	□□□□□ -0.18
RNF38-208	ENST00000488058	SPANXB1	Q9NS25	103 aa	Predicted RBP	13.9	□□□□□ -0.18
RNF38-208	ENST00000488058	TRBV10-2	A0A0K0K1G8	114 aa		13.89	□□□□□ -0.19
RNF38-208	ENST00000488058	COA6	Q5JTJ3	125 aa	Known RBP	13.89	□□□□□ -0.19
RNF38-208	ENST00000488058	ADAMTSL4-AS1	Q5T5F5	129 aa		13.89	□□□□□ -0.19
RNF38-208	ENST00000488058	S100A7L2	Q5SY68	101 aa		13.87	□□□□□ -0.19
RNF38-208	ENST00000488058	SOSTDC1	Q6X4U4	206 aa		13.87	□□□□□ -0.19
RNF38-208	ENST00000488058	SPRR4	Q96PI1	79 aa		13.87	□□□□□ -0.19
RNF38-208	ENST00000488058	ZNF706	Q9Y5V0	76 aa	Predicted RBP	13.87	□□□□□ -0.19
RNF38-208	ENST00000488058	NDUFC2	O95298	119 aa		13.86	□□□□□ -0.19
RNF38-208	ENST00000488058	LINC00304	Q8N9R0	145 aa		13.86	□□□□□ -0.19
RNF38-208	ENST00000488058	SMCR5	Q8TEV8	140 aa		13.86	□□□□□ -0.19
RNF38-208	ENST00000488058	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	13.85	□□□□□ -0.19
RNF38-208	ENST00000488058	C3orf22	Q8N5N4	141 aa		13.85	□□□□□ -0.19
RNF38-208	ENST00000488058	ZNF815P	A8K554	130 aa		13.84	□□□□□ -0.19
RNF38-208	ENST00000488058	EIF4EBP3	O60516	100 aa	Predicted RBP	13.84	□□□□□ -0.19
RNF38-208	ENST00000488058	TTTY13	Q9BZ97	58 aa		13.83	□□□□□ -0.2
RNF38-208	ENST00000488058	C20orf202	A1L168	122 aa		13.82	□□□□□ -0.2
RNF38-208	ENST00000488058		B5MCH6	92 aa		13.81	□□□□□ -0.2
RNF38-208	ENST00000488058	PPDPF	Q9H3Y8	114 aa		13.81	□□□□□ -0.2
RNF38-208	ENST00000488058	LITAF	Q99732	161 aa		13.8	□□□□□ -0.2
RNF38-208	ENST00000488058	LPA	P08519	4548 aa		13.8	□□□□□ -0.2
RNF38-208	ENST00000488058	TRAV23DV6	A0A075B6W5	121 aa		13.79	□□□□□ -0.2
RNF38-208	ENST00000488058	IGLV6-57	P01721	117 aa		13.79	□□□□□ -0.2
RNF38-208	ENST00000488058	LINC00308	Q8TCZ7	52 aa		13.79	□□□□□ -0.2
RNF38-208	ENST00000488058	TIMM17B	O60830	172 aa		13.78	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms