RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SMIM29Q86T20 159 aa11.34□□□□□ -0.59
COL7A1-210ENST00000487017 C1orf64Q8NEQ6 169 aa11.33□□□□□ -0.6
COL7A1-210ENST00000487017 ELOF1P60002 83 aaKnown RBP11.31□□□□□ -0.6
COL7A1-210ENST00000487017 LITAFQ99732 161 aa11.31□□□□□ -0.6
COL7A1-210ENST00000487017 Q6ZQT0 140 aa11.3□□□□□ -0.6
COL7A1-210ENST00000487017 MUC4Q99102 2169 aa11.3□□□□□ -0.6
COL7A1-210ENST00000487017 C7orf65Q6ZTY9 151 aa11.29□□□□□ -0.6
COL7A1-210ENST00000487017 LINC00167Q96N53 147 aa11.29□□□□□ -0.6
COL7A1-210ENST00000487017 LOC110117498A0A087WWA1 95 aa11.29□□□□□ -0.6
COL7A1-210ENST00000487017 LIMD2Q9BT23 127 aa11.29□□□□□ -0.6
COL7A1-210ENST00000487017 A0A1B0GW54 56 aa11.27□□□□□ -0.61
COL7A1-210ENST00000487017 SPACA4Q8TDM5 124 aa11.27□□□□□ -0.61
COL7A1-210ENST00000487017 USP9XQ93008 2570 aaPredicted RBP11.27□□□□□ -0.61
COL7A1-210ENST00000487017 RPS28P62857 69 aaKnown RBP11.27□□□□□ -0.61
COL7A1-210ENST00000487017 ABCA12Q86UK0 2595 aa11.26□□□□□ -0.61
COL7A1-210ENST00000487017 PCSK5Q92824 1860 aa11.26□□□□□ -0.61
COL7A1-210ENST00000487017 H3BNG1 76 aa11.26□□□□□ -0.61
COL7A1-210ENST00000487017 CENPFP49454 3210 aa11.24□□□□□ -0.61
COL7A1-210ENST00000487017 MOBPQ13875 183 aa11.23□□□□□ -0.61
COL7A1-210ENST00000487017 TLN2Q9Y4G6 2542 aa11.22□□□□□ -0.61
COL7A1-210ENST00000487017 A0A1B0GU69 56 aa11.21□□□□□ -0.62
COL7A1-210ENST00000487017 FN1P02751 2386 aaKnown RBP11.2□□□□□ -0.62
COL7A1-210ENST00000487017 Q6ZRX8 168 aa11.2□□□□□ -0.62
COL7A1-210ENST00000487017 MDFIQ99750 246 aa11.2□□□□□ -0.62
COL7A1-210ENST00000487017 JMJD1CQ15652 2540 aa11.2□□□□□ -0.62
COL7A1-210ENST00000487017 Q8NBF4 154 aa11.19□□□□□ -0.62
COL7A1-210ENST00000487017 SERTAD4-AS1Q5TG53 156 aa11.19□□□□□ -0.62
COL7A1-210ENST00000487017 TP53AIP1Q9HCN2 124 aa11.19□□□□□ -0.62
COL7A1-210ENST00000487017 ANKRD11Q6UB99 2663 aaPredicted RBP11.18□□□□□ -0.62
COL7A1-210ENST00000487017 CEP295Q9C0D2 2601 aa11.18□□□□□ -0.62
COL7A1-210ENST00000487017 LINC00476Q8WZB0 136 aa11.16□□□□□ -0.62
COL7A1-210ENST00000487017 GVQW2A0A096LPI5 108 aaPredicted RBP11.16□□□□□ -0.62
COL7A1-210ENST00000487017 PLA2G1BP04054 148 aaKnown RBP11.15□□□□□ -0.62
COL7A1-210ENST00000487017 SPAG11AQ6PDA7 123 aa11.15□□□□□ -0.62
COL7A1-210ENST00000487017 Q8NAQ8 132 aa11.15□□□□□ -0.62
COL7A1-210ENST00000487017 TM2D3Q9BRN9 247 aa11.15□□□□□ -0.62
COL7A1-210ENST00000487017 NHLRC4P0CG21 123 aaPredicted RBP11.14□□□□□ -0.63
COL7A1-210ENST00000487017 USP9YO00507 2555 aaPredicted RBP11.14□□□□□ -0.63
COL7A1-210ENST00000487017 LRRK2Q5S007 2527 aa11.14□□□□□ -0.63
COL7A1-210ENST00000487017 IGLV6-57P01721 117 aa11.13□□□□□ -0.63
COL7A1-210ENST00000487017 IGLV8-61A0A075B6I0 122 aa11.12□□□□□ -0.63
COL7A1-210ENST00000487017 H3BPC8 53 aa11.12□□□□□ -0.63
COL7A1-210ENST00000487017 PHF5AQ7RTV0 110 aaKnown RBP11.12□□□□□ -0.63
COL7A1-210ENST00000487017 ST20-AS1Q8NBB2 130 aa11.12□□□□□ -0.63
COL7A1-210ENST00000487017 ACYP2P14621 99 aa11.11□□□□□ -0.63
COL7A1-210ENST00000487017 SETD2Q9BYW2 2564 aaPredicted RBP11.11□□□□□ -0.63
COL7A1-210ENST00000487017 CHTF8P0CG12 524 aa11.11□□□□□ -0.63
COL7A1-210ENST00000487017 VPREB1P12018 145 aa11.09□□□□□ -0.63
COL7A1-210ENST00000487017 Q6ZRP5 223 aa11.08□□□□□ -0.64
COL7A1-210ENST00000487017 ZFYVE26Q68DK2 2539 aa11.08□□□□□ -0.64
COL7A1-210ENST00000487017 C16orf90A8MZG2 172 aa11.07□□□□□ -0.64
COL7A1-210ENST00000487017 EPM2AB3EWF7 344 aa11.07□□□□□ -0.64
COL7A1-210ENST00000487017 EIF4EBP3O60516 100 aaPredicted RBP11.07□□□□□ -0.64
COL7A1-210ENST00000487017 RPL37AP61513 92 aaKnown RBP11.07□□□□□ -0.64
COL7A1-210ENST00000487017 LINC00588Q9Y4M8 146 aa11.05□□□□□ -0.64
COL7A1-210ENST00000487017 TRAV22A0A0B4J277 110 aa11.05□□□□□ -0.64
COL7A1-210ENST00000487017 CSNK1G2-AS1Q8NCQ2 148 aa11.05□□□□□ -0.64
COL7A1-210ENST00000487017 TRBV7-4A0A0J9YYF1 115 aa11.04□□□□□ -0.64
COL7A1-210ENST00000487017 ATP11AUNQ6ZP68 121 aa11.03□□□□□ -0.64
COL7A1-210ENST00000487017 PKD1L2Q7Z442 2459 aa11.03□□□□□ -0.64
COL7A1-210ENST00000487017 LINC00313P59037 77 aa11.03□□□□□ -0.64
COL7A1-210ENST00000487017 RTL8CO15255 209 aa11.01□□□□□ -0.65
COL7A1-210ENST00000487017 ERC2-IT1O76042 136 aa11.01□□□□□ -0.65
COL7A1-210ENST00000487017 TYMSOSQ8TAI1 123 aa11□□□□□ -0.65
COL7A1-210ENST00000487017 GOLGB1Q14789 3259 aaKnown RBP11□□□□□ -0.65
COL7A1-210ENST00000487017 DNAH10OSP0CZ25 163 aa11□□□□□ -0.65
COL7A1-210ENST00000487017 FAM168BA1KXE4 195 aa10.98□□□□□ -0.65
COL7A1-210ENST00000487017 KRTAP24-1Q3LI83 254 aa10.98□□□□□ -0.65
COL7A1-210ENST00000487017 Q96NJ1 140 aa10.98□□□□□ -0.65
COL7A1-210ENST00000487017 KCNQ1DNQ9H478 68 aa10.97□□□□□ -0.65
COL7A1-210ENST00000487017 NBDYA0A0U1RRE5 68 aa10.97□□□□□ -0.65
COL7A1-210ENST00000487017 LINC00528Q8N1L1 170 aa10.97□□□□□ -0.65
COL7A1-210ENST00000487017 K7EQZ3 153 aa10.97□□□□□ -0.65
COL7A1-210ENST00000487017 FAM229AH3BQW9 127 aa10.96□□□□□ -0.65
COL7A1-210ENST00000487017 IGLV1-50A0A075B6I6 118 aa10.96□□□□□ -0.65
COL7A1-210ENST00000487017 SPINT4Q6UDR6 99 aa10.95□□□□□ -0.66
COL7A1-210ENST00000487017 A8MWP4 228 aa10.95□□□□□ -0.66
COL7A1-210ENST00000487017 ZNF462Q96JM2 2506 aa10.95□□□□□ -0.66
COL7A1-210ENST00000487017 C8orf87E5RJ46 101 aa10.93□□□□□ -0.66
COL7A1-210ENST00000487017 PRR34Q9NV39 138 aa10.93□□□□□ -0.66
COL7A1-210ENST00000487017 ANKRD17O75179 2603 aaKnown RBP10.92□□□□□ -0.66
COL7A1-210ENST00000487017 CHD8Q9HCK8 2581 aa10.91□□□□□ -0.66
COL7A1-210ENST00000487017 GIG44P09565 113 aaPredicted RBP10.91□□□□□ -0.66
COL7A1-210ENST00000487017 MTORP42345 2549 aa10.9□□□□□ -0.66
COL7A1-210ENST00000487017 A8MUN3 132 aa10.89□□□□□ -0.67
COL7A1-210ENST00000487017 SPTBN4Q9H254 2564 aa10.89□□□□□ -0.67
COL7A1-210ENST00000487017 LOC101927531A0A1B0GV80 90 aa10.89□□□□□ -0.67
COL7A1-210ENST00000487017 KLKP1Q107X0 134 aa10.89□□□□□ -0.67
COL7A1-210ENST00000487017 A0A096LNT2 108 aa10.88□□□□□ -0.67
COL7A1-210ENST00000487017 C15orf56Q8N910 161 aa10.88□□□□□ -0.67
COL7A1-210ENST00000487017 LINC00336Q6ZUF6 198 aa10.88□□□□□ -0.67
COL7A1-210ENST00000487017 C19orf73Q9NVV2 129 aa10.88□□□□□ -0.67
COL7A1-210ENST00000487017 LINC00612Q8N6U2 182 aa10.87□□□□□ -0.67
COL7A1-210ENST00000487017 SSBP3-AS1Q7Z2R9 100 aa10.87□□□□□ -0.67
COL7A1-210ENST00000487017 IGFL1Q6UW32 110 aa10.86□□□□□ -0.67
COL7A1-210ENST00000487017 POLQO75417 2590 aa10.86□□□□□ -0.67
COL7A1-210ENST00000487017 MRPL34Q9BQ48 92 aaKnown RBP10.85□□□□□ -0.67
COL7A1-210ENST00000487017 Q8N377 158 aa10.84□□□□□ -0.67
COL7A1-210ENST00000487017 C9orf129Q5T035 196 aaKnown RBP10.84□□□□□ -0.67
COL7A1-210ENST00000487017 COA5Q86WW8 74 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 192.2 ms