RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PLEKHB2Q96CS7 222 aa5.09□□□□□ -1.59
USP40-216ENST00000485943 XAGE1AQ9HD64 81 aa5.09□□□□□ -1.59
USP40-216ENST00000485943 RYR1P21817 5038 aa5.09□□□□□ -1.6
USP40-216ENST00000485943 A0A0U1RRA0 63 aa5.08□□□□□ -1.6
USP40-216ENST00000485943 AKR1D1P51857 326 aa5.08□□□□□ -1.6
USP40-216ENST00000485943 HERV-K104P63124 156 aa5.08□□□□□ -1.6
USP40-216ENST00000485943 RPL24P83731 157 aaKnown RBP5.08□□□□□ -1.6
USP40-216ENST00000485943 C1orf137Q5JT78 98 aa5.08□□□□□ -1.6
USP40-216ENST00000485943 LCE1DQ5T752 114 aa5.08□□□□□ -1.6
USP40-216ENST00000485943 ERG28Q9UKR5 140 aa5.08□□□□□ -1.6
USP40-216ENST00000485943 DNAH5Q8TE73 4624 aa5.08□□□□□ -1.6
USP40-216ENST00000485943 LRP1BQ9NZR2 4599 aa5.08□□□□□ -1.6
USP40-216ENST00000485943 TMEM223A0PJW6 202 aa5.07□□□□□ -1.6
USP40-216ENST00000485943 COX17Q14061 63 aa5.07□□□□□ -1.6
USP40-216ENST00000485943 REG3GQ6UW15 175 aa5.07□□□□□ -1.6
USP40-216ENST00000485943 PHF5AQ7RTV0 110 aaKnown RBP5.07□□□□□ -1.6
USP40-216ENST00000485943 PMCHL2Q9BQD1 86 aa5.07□□□□□ -1.6
USP40-216ENST00000485943 NDUFA12Q9UI09 145 aa5.07□□□□□ -1.6
USP40-216ENST00000485943 HSBP1L1C9JCN9 74 aa5.06□□□□□ -1.6
USP40-216ENST00000485943 LEPROTO15243 131 aa5.06□□□□□ -1.6
USP40-216ENST00000485943 PET117Q6UWS5 81 aa5.06□□□□□ -1.6
USP40-216ENST00000485943 IGLV5-39A0A0G2JS06 123 aa5.05□□□□□ -1.6
USP40-216ENST00000485943 A0A1W2PNN7 141 aa5.05□□□□□ -1.6
USP40-216ENST00000485943 FAM168BA1KXE4 195 aa5.05□□□□□ -1.6
USP40-216ENST00000485943 GAGE10A6NGK3 116 aa5.05□□□□□ -1.6
USP40-216ENST00000485943 SYS1-DBNDD2H3BUS1 97 aa5.05□□□□□ -1.6
USP40-216ENST00000485943 J3QQQ9 107 aa5.05□□□□□ -1.6
USP40-216ENST00000485943 PRR3P79522 188 aaKnown RBP5.05□□□□□ -1.6
USP40-216ENST00000485943 MRPL55Q7Z7F7 128 aaKnown RBP5.05□□□□□ -1.6
USP40-216ENST00000485943 KRTAP4-5Q9BYR2 181 aa5.05□□□□□ -1.6
USP40-216ENST00000485943 HERC2O95714 4834 aa5.04□□□□□ -1.6
USP40-216ENST00000485943 NUPR1O60356 82 aa5.04□□□□□ -1.6
USP40-216ENST00000485943 NMUP48645 174 aa5.04□□□□□ -1.6
USP40-216ENST00000485943 C22orf24Q9Y442 160 aa5.04□□□□□ -1.6
USP40-216ENST00000485943 SMIM13P0DJ93 91 aa5.03□□□□□ -1.6
USP40-216ENST00000485943 UBE2AP49459 152 aa5.03□□□□□ -1.6
USP40-216ENST00000485943 C9orf129Q5T035 196 aaKnown RBP5.03□□□□□ -1.6
USP40-216ENST00000485943 SCGB1D4Q6XE38 83 aa5.03□□□□□ -1.6
USP40-216ENST00000485943 DIRC1Q969H9 104 aa5.03□□□□□ -1.6
USP40-216ENST00000485943 PSORS1C2Q9UIG4 136 aa5.03□□□□□ -1.6
USP40-216ENST00000485943 RPL37AP8A6NKH3 93 aa5.02□□□□□ -1.61
USP40-216ENST00000485943 HNRNPA3P51991 378 aaKnown RBP5.02□□□□□ -1.61
USP40-216ENST00000485943 SPINK6Q6UWN8 80 aa5.02□□□□□ -1.61
USP40-216ENST00000485943 BOD1L2Q8IYS8 172 aa5.02□□□□□ -1.61
USP40-216ENST00000485943 SND1-IT1Q9HBX3 110 aa5.02□□□□□ -1.61
USP40-216ENST00000485943 APOBP04114 4563 aaKnown RBP5.01□□□□□ -1.61
USP40-216ENST00000485943 IGKV2-28A0A075B6P5 120 aa5.01□□□□□ -1.61
USP40-216ENST00000485943 ZNF815PA8K554 130 aa5.01□□□□□ -1.61
USP40-216ENST00000485943 IGKV2D-28P01615 120 aa5.01□□□□□ -1.61
USP40-216ENST00000485943 C3orf79P0CE67 100 aa5.01□□□□□ -1.61
USP40-216ENST00000485943 RPL28P46779 137 aaKnown RBP5.01□□□□□ -1.61
USP40-216ENST00000485943 S100A7L2Q5SY68 101 aa5.01□□□□□ -1.61
USP40-216ENST00000485943 SERTAD4-AS1Q5TG53 156 aa5.01□□□□□ -1.61
USP40-216ENST00000485943 MIR7-3HGQ8N6C7 128 aa5.01□□□□□ -1.61
USP40-216ENST00000485943 COPS9Q8WXC6 57 aa5.01□□□□□ -1.61
USP40-216ENST00000485943 TP73-AS1Q9UF72 201 aa5.01□□□□□ -1.61
USP40-216ENST00000485943 A0A0A0MQY5 61 aa5□□□□□ -1.61
USP40-216ENST00000485943 NCR3O14931 201 aa5□□□□□ -1.61
USP40-216ENST00000485943 OXTP01178 125 aa5□□□□□ -1.61
USP40-216ENST00000485943 CBY1Q9Y3M2 126 aa5□□□□□ -1.61
USP40-216ENST00000485943 HSPG2P98160 4391 aa5□□□□□ -1.61
USP40-216ENST00000485943 E9PLD3 99 aa4.99□□□□□ -1.61
USP40-216ENST00000485943 SCGB1D1O95968 90 aa4.99□□□□□ -1.61
USP40-216ENST00000485943 IGLV7-43P04211 117 aa4.99□□□□□ -1.61
USP40-216ENST00000485943 HINT1P49773 126 aaPredicted RBP4.99□□□□□ -1.61
USP40-216ENST00000485943 NPC2P61916 151 aa4.99□□□□□ -1.61
USP40-216ENST00000485943 COA6Q5JTJ3 125 aaKnown RBP4.99□□□□□ -1.61
USP40-216ENST00000485943 LINC01545Q5VT33 79 aa4.99□□□□□ -1.61
USP40-216ENST00000485943 LINC00167Q96N53 147 aa4.99□□□□□ -1.61
USP40-216ENST00000485943 TMEM238C9JI98 176 aa4.98□□□□□ -1.61
USP40-216ENST00000485943 M0R378 163 aa4.98□□□□□ -1.61
USP40-216ENST00000485943 SNRPEP62304 92 aaKnown RBP4.98□□□□□ -1.61
USP40-216ENST00000485943 FAM19A1Q7Z5A9 133 aa4.98□□□□□ -1.61
USP40-216ENST00000485943 ATOH7Q8N100 152 aa4.98□□□□□ -1.61
USP40-216ENST00000485943 ETDCA0A1B0GVM5 59 aa4.97□□□□□ -1.61
USP40-216ENST00000485943 DAND5Q8N907 189 aa4.97□□□□□ -1.61
USP40-216ENST00000485943 OR13C6PQ8NH95 151 aa4.97□□□□□ -1.61
USP40-216ENST00000485943 KRTAP9-3Q9BYQ3 159 aa4.97□□□□□ -1.61
USP40-216ENST00000485943 FLG2Q5D862 2391 aaPredicted RBP4.97□□□□□ -1.61
USP40-216ENST00000485943 IGKV2D-26A0A0A0MRZ7 120 aa4.96□□□□□ -1.62
USP40-216ENST00000485943 KRTAP29-1A8MX34 341 aaPredicted RBP4.96□□□□□ -1.62
USP40-216ENST00000485943 BCE1O60756 84 aa4.96□□□□□ -1.62
USP40-216ENST00000485943 HIST3H2BBQ8N257 126 aa4.96□□□□□ -1.62
USP40-216ENST00000485943 KRTAP4-7Q9BYR0 210 aa4.96□□□□□ -1.62
USP40-216ENST00000485943 IGLV5-37A0A075B6J1 123 aa4.95□□□□□ -1.62
USP40-216ENST00000485943 A0A0J9YXY3 114 aa4.95□□□□□ -1.62
USP40-216ENST00000485943 H0Y9J4 135 aa4.95□□□□□ -1.62
USP40-216ENST00000485943 ZNF861PO60384 105 aa4.95□□□□□ -1.62
USP40-216ENST00000485943 VPREB1P12018 145 aa4.95□□□□□ -1.62
USP40-216ENST00000485943 TSPEAR-AS2P59090 65 aa4.95□□□□□ -1.62
USP40-216ENST00000485943 SRSF9Q13242 221 aaKnown RBP eCLIP4.95□□□□□ -1.62
USP40-216ENST00000485943 SPANXB1Q9NS25 103 aaPredicted RBP4.95□□□□□ -1.62
USP40-216ENST00000485943 SRRM2Q9UQ35 2752 aaKnown RBP4.95□□□□□ -1.62
USP40-216ENST00000485943 PCLOQ9Y6V0 5065 aa4.94□□□□□ -1.62
USP40-216ENST00000485943 DDTP30046 118 aa4.94□□□□□ -1.62
USP40-216ENST00000485943 HIST1H2BLQ99880 126 aa4.94□□□□□ -1.62
USP40-216ENST00000485943 HIGD2AQ9BW72 106 aa4.94□□□□□ -1.62
USP40-216ENST00000485943 ABCA13Q86UQ4 5058 aa4.93□□□□□ -1.62
USP40-216ENST00000485943 IGLV1-50A0A075B6I6 118 aa4.93□□□□□ -1.62
USP40-216ENST00000485943 RPL13AP40429 203 aaKnown RBP4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms