RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 PSORS1C2Q9UIG4 136 aa3.49□□□□□ -1.85
CUX1-208ENST00000485792 TMEM223A0PJW6 202 aa3.48□□□□□ -1.85
CUX1-208ENST00000485792 H3BRM9 83 aa3.48□□□□□ -1.85
CUX1-208ENST00000485792 SERF1AO75920 110 aa3.48□□□□□ -1.85
CUX1-208ENST00000485792 SPINK8P0C7L1 97 aa3.48□□□□□ -1.85
CUX1-208ENST00000485792 CKS1BP61024 79 aa3.48□□□□□ -1.85
CUX1-208ENST00000485792 RPL18AQ02543 176 aaKnown RBP3.48□□□□□ -1.85
CUX1-208ENST00000485792 COA6Q5JTJ3 125 aaKnown RBP3.48□□□□□ -1.85
CUX1-208ENST00000485792 PHF5AQ7RTV0 110 aaKnown RBP3.48□□□□□ -1.85
CUX1-208ENST00000485792 BAGE3Q86Y29 109 aa3.48□□□□□ -1.85
CUX1-208ENST00000485792 PACRGQ96M98 296 aaPredicted RBP3.48□□□□□ -1.85
CUX1-208ENST00000485792 LOC107984156A0A0G2JMH3 177 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 HIST1H2BKO60814 126 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 HIST1H2BJP06899 126 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 PRSS2P07478 247 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 HIST1H2BOP23527 126 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 HIST1H2BBP33778 126 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 HIST1H2BDP58876 126 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 TSPEAR-AS2P59090 65 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 HIST1H2BCP62807 126 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 COX17Q14061 63 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 HIST2H2BEQ16778 126 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.47□□□□□ -1.85
CUX1-208ENST00000485792 ARL17AQ8IVW1 177 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 FAM19A2Q8N3H0 131 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 HIST1H2BHQ93079 126 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 HIST1H2BNQ99877 126 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 HIST1H2BMQ99879 126 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 TOMM7Q9P0U1 55 aa3.47□□□□□ -1.85
CUX1-208ENST00000485792 HSBP1O75506 76 aa3.46□□□□□ -1.86
CUX1-208ENST00000485792 LEPROTL1O95214 131 aa3.46□□□□□ -1.86
CUX1-208ENST00000485792 IGLV7-43P04211 117 aa3.46□□□□□ -1.86
CUX1-208ENST00000485792 KRTAP1-4P0C5Y4 121 aa3.46□□□□□ -1.86
CUX1-208ENST00000485792 GAGE2EQ4V326 116 aa3.46□□□□□ -1.86
CUX1-208ENST00000485792 KRTAP5-3Q6L8H2 238 aa3.46□□□□□ -1.86
CUX1-208ENST00000485792 SFTA2Q6UW10 78 aa3.46□□□□□ -1.86
CUX1-208ENST00000485792 KRTAP13-1Q8IUC0 172 aa3.46□□□□□ -1.86
CUX1-208ENST00000485792 GAGE2DQ9UEU5 116 aa3.46□□□□□ -1.86
CUX1-208ENST00000485792 CHTOPQ9Y3Y2 248 aaKnown RBP3.46□□□□□ -1.86
CUX1-208ENST00000485792 C22orf24Q9Y442 160 aa3.46□□□□□ -1.86
CUX1-208ENST00000485792 A4D1N5 150 aa3.45□□□□□ -1.86
CUX1-208ENST00000485792 M0QXV9 152 aa3.45□□□□□ -1.86
CUX1-208ENST00000485792 PCP4P48539 62 aa3.45□□□□□ -1.86
CUX1-208ENST00000485792 XAGE1AQ9HD64 81 aa3.45□□□□□ -1.86
CUX1-208ENST00000485792 VPREB1P12018 145 aa3.44□□□□□ -1.86
CUX1-208ENST00000485792 FAM19A5Q7Z5A7 132 aaPredicted RBP3.44□□□□□ -1.86
CUX1-208ENST00000485792 LINC00167Q96N53 147 aa3.44□□□□□ -1.86
CUX1-208ENST00000485792 SND1-IT1Q9HBX3 110 aa3.44□□□□□ -1.86
CUX1-208ENST00000485792 ERG28Q9UKR5 140 aa3.44□□□□□ -1.86
CUX1-208ENST00000485792 H0Y9J4 135 aa3.43□□□□□ -1.86
CUX1-208ENST00000485792 NDUFA6P56556 154 aa3.43□□□□□ -1.86
CUX1-208ENST00000485792 LBHQ53QV2 105 aaPredicted RBP3.43□□□□□ -1.86
CUX1-208ENST00000485792 C1orf137Q5JT78 98 aa3.43□□□□□ -1.86
CUX1-208ENST00000485792 TMEM170BQ5T4T1 132 aa3.43□□□□□ -1.86
CUX1-208ENST00000485792 LINC01545Q5VT33 79 aa3.43□□□□□ -1.86
CUX1-208ENST00000485792 MRPL55Q7Z7F7 128 aaKnown RBP3.43□□□□□ -1.86
CUX1-208ENST00000485792 HSPB8Q9UJY1 196 aa3.43□□□□□ -1.86
CUX1-208ENST00000485792 IGLV1-50A0A075B6I6 118 aa3.42□□□□□ -1.86
CUX1-208ENST00000485792 ZNF861PO60384 105 aa3.42□□□□□ -1.86
CUX1-208ENST00000485792 PLNP26678 52 aa3.42□□□□□ -1.86
CUX1-208ENST00000485792 HERV-K104P63124 156 aa3.42□□□□□ -1.86
CUX1-208ENST00000485792 REG3GQ6UW15 175 aa3.42□□□□□ -1.86
CUX1-208ENST00000485792 DIRC1Q969H9 104 aa3.42□□□□□ -1.86
CUX1-208ENST00000485792 PMCHL2Q9BQD1 86 aa3.42□□□□□ -1.86
CUX1-208ENST00000485792 KRTAP4-16G5E9R7 235 aaPredicted RBP3.41□□□□□ -1.86
CUX1-208ENST00000485792 SYS1-DBNDD2H3BUS1 97 aa3.41□□□□□ -1.86
CUX1-208ENST00000485792 LEPROTO15243 131 aa3.41□□□□□ -1.86
CUX1-208ENST00000485792 BCE1O60756 84 aa3.41□□□□□ -1.86
CUX1-208ENST00000485792 DPM2O94777 84 aa3.41□□□□□ -1.86
CUX1-208ENST00000485792 S100A1P23297 94 aa3.41□□□□□ -1.86
CUX1-208ENST00000485792 PFN2P35080 140 aa3.41□□□□□ -1.86
CUX1-208ENST00000485792 SPRR1AP35321 89 aa3.41□□□□□ -1.86
CUX1-208ENST00000485792 NDUFA12Q9UI09 145 aa3.41□□□□□ -1.86
CUX1-208ENST00000485792 E9PLD3 99 aa3.4□□□□□ -1.87
CUX1-208ENST00000485792 J3QQQ9 107 aa3.4□□□□□ -1.87
CUX1-208ENST00000485792 IGKCP01834 107 aa3.4□□□□□ -1.87
CUX1-208ENST00000485792 FABP4P15090 132 aa3.4□□□□□ -1.87
CUX1-208ENST00000485792 NMUP48645 174 aa3.4□□□□□ -1.87
CUX1-208ENST00000485792 PET117Q6UWS5 81 aa3.4□□□□□ -1.87
CUX1-208ENST00000485792 PLEKHB2Q96CS7 222 aa3.4□□□□□ -1.87
CUX1-208ENST00000485792 LITAFQ99732 161 aa3.4□□□□□ -1.87
CUX1-208ENST00000485792 MAP1LC3CQ9BXW4 147 aa3.4□□□□□ -1.87
CUX1-208ENST00000485792 MUC17Q685J3 4493 aa3.39□□□□□ -1.87
CUX1-208ENST00000485792 IGKV2D-26A0A0A0MRZ7 120 aa3.39□□□□□ -1.87
CUX1-208ENST00000485792 MYMXA0A1B0GTQ4 84 aa3.39□□□□□ -1.87
CUX1-208ENST00000485792 LINC00587B1AMM8 73 aa3.39□□□□□ -1.87
CUX1-208ENST00000485792 M0R378 163 aa3.39□□□□□ -1.87
CUX1-208ENST00000485792 C3orf79P0CE67 100 aa3.39□□□□□ -1.87
CUX1-208ENST00000485792 SMIM13P0DJ93 91 aa3.39□□□□□ -1.87
CUX1-208ENST00000485792 UBE2BP63146 152 aa3.39□□□□□ -1.87
CUX1-208ENST00000485792 RPL24P83731 157 aaKnown RBP3.39□□□□□ -1.87
CUX1-208ENST00000485792 SOSTDC1Q6X4U4 206 aa3.39□□□□□ -1.87
CUX1-208ENST00000485792 MPLKIPQ8TAP9 179 aa3.39□□□□□ -1.87
CUX1-208ENST00000485792 TTTY13Q9BZ97 58 aa3.39□□□□□ -1.87
CUX1-208ENST00000485792 KCNQ1DNQ9H478 68 aa3.39□□□□□ -1.87
CUX1-208ENST00000485792 A0A087X002 238 aa3.38□□□□□ -1.87
CUX1-208ENST00000485792 A0A0J9YXY3 114 aa3.38□□□□□ -1.87
CUX1-208ENST00000485792 TRBV10-2A0A0K0K1G8 114 aa3.38□□□□□ -1.87
CUX1-208ENST00000485792 RPL37AP8A6NKH3 93 aa3.38□□□□□ -1.87
CUX1-208ENST00000485792 ATP6V1G1O75348 118 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms