RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 LEPROTL1O95214 131 aa7.13□□□□□ -1.27
SYNE1-221ENST00000472563 IGKV2D-28P01615 120 aa7.13□□□□□ -1.27
SYNE1-221ENST00000472563 LCE2DQ5TA82 110 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-221ENST00000472563 UBE2AP49459 152 aa7.12□□□□□ -1.27
SYNE1-221ENST00000472563 Q8NDZ9 215 aa7.12□□□□□ -1.27
SYNE1-221ENST00000472563 HERV-K104P63124 156 aa7.11□□□□□ -1.27
SYNE1-221ENST00000472563 TMEM126AQ9H061 195 aa7.11□□□□□ -1.27
SYNE1-221ENST00000472563 HSPB8Q9UJY1 196 aa7.11□□□□□ -1.27
SYNE1-221ENST00000472563 LINC00587B1AMM8 73 aa7.1□□□□□ -1.27
SYNE1-221ENST00000472563 H0Y8G0 127 aa7.1□□□□□ -1.27
SYNE1-221ENST00000472563 ATP6V1G1O75348 118 aa7.1□□□□□ -1.27
SYNE1-221ENST00000472563 SMIM13P0DJ93 91 aa7.1□□□□□ -1.27
SYNE1-221ENST00000472563 PLNP26678 52 aa7.1□□□□□ -1.27
SYNE1-221ENST00000472563 NDUFA12Q9UI09 145 aa7.1□□□□□ -1.27
SYNE1-221ENST00000472563 A0A0U1RRA0 63 aa7.09□□□□□ -1.27
SYNE1-221ENST00000472563 MYMXA0A1B0GTQ4 84 aa7.09□□□□□ -1.27
SYNE1-221ENST00000472563 TMEM238C9JI98 176 aa7.09□□□□□ -1.27
SYNE1-221ENST00000472563 M0R378 163 aa7.09□□□□□ -1.27
SYNE1-221ENST00000472563 CRYGAP11844 174 aa7.09□□□□□ -1.27
SYNE1-221ENST00000472563 FABP4P15090 132 aa7.09□□□□□ -1.27
SYNE1-221ENST00000472563 MEIG1Q5JSS6 88 aa7.08□□□□□ -1.28
SYNE1-221ENST00000472563 FAM19A1Q7Z5A9 133 aa7.08□□□□□ -1.28
SYNE1-221ENST00000472563 MIR7-3HGQ8N6C7 128 aa7.08□□□□□ -1.28
SYNE1-221ENST00000472563 PLEKHB2Q96CS7 222 aa7.08□□□□□ -1.28
SYNE1-221ENST00000472563 A0A087X002 238 aa7.07□□□□□ -1.28
SYNE1-221ENST00000472563 LEPROTO15243 131 aa7.07□□□□□ -1.28
SYNE1-221ENST00000472563 DPM2O94777 84 aa7.07□□□□□ -1.28
SYNE1-221ENST00000472563 BOD1L2Q8IYS8 172 aa7.07□□□□□ -1.28
SYNE1-221ENST00000472563 MAP1LC3CQ9BXW4 147 aa7.07□□□□□ -1.28
SYNE1-221ENST00000472563 TSPEAR-AS2P59090 65 aa7.06□□□□□ -1.28
SYNE1-221ENST00000472563 PRLHP81277 87 aa7.06□□□□□ -1.28
SYNE1-221ENST00000472563 FAM229BQ4G0N7 80 aa7.06□□□□□ -1.28
SYNE1-221ENST00000472563 ANAPC11Q9NYG5 84 aa7.06□□□□□ -1.28
SYNE1-221ENST00000472563 J3QQQ9 107 aa7.05□□□□□ -1.28
SYNE1-221ENST00000472563 IGKCP01834 107 aa7.05□□□□□ -1.28
SYNE1-221ENST00000472563 HERVK_113P61574 105 aa7.05□□□□□ -1.28
SYNE1-221ENST00000472563 TYMSOSQ8TAI1 123 aa7.05□□□□□ -1.28
SYNE1-221ENST00000472563 PMCHL2Q9BQD1 86 aa7.05□□□□□ -1.28
SYNE1-221ENST00000472563 IGKV2D-26A0A0A0MRZ7 120 aa7.04□□□□□ -1.28
SYNE1-221ENST00000472563 NMUP48645 174 aa7.04□□□□□ -1.28
SYNE1-221ENST00000472563 LOC107984156A0A0G2JMH3 177 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 HIST1H2BKO60814 126 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 HIST1H2BJP06899 126 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 HIST1H2BOP23527 126 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 HIST1H2BBP33778 126 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 HIST1H2BDP58876 126 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 HIST1H2BCP62807 126 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 HIST2H2BEQ16778 126 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 KRTAP13-2Q52LG2 175 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-221ENST00000472563 ARL17AQ8IVW1 177 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 HIST1H2BHQ93079 126 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 HIST1H2BNQ99877 126 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 HIST1H2BMQ99879 126 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 KCNQ1DNQ9H478 68 aa7.03□□□□□ -1.28
SYNE1-221ENST00000472563 PRYO14603 147 aa7.02□□□□□ -1.29
SYNE1-221ENST00000472563 NCR3O14931 201 aa7.02□□□□□ -1.29
SYNE1-221ENST00000472563 LGALS3P17931 250 aaKnown RBP7.02□□□□□ -1.29
SYNE1-221ENST00000472563 SPRR1AP35321 89 aa7.01□□□□□ -1.29
SYNE1-221ENST00000472563 LINC00337Q8N6G1 96 aa7.01□□□□□ -1.29
SYNE1-221ENST00000472563 HIGD2AQ9BW72 106 aa7.01□□□□□ -1.29
SYNE1-221ENST00000472563 SYS1-DBNDD2H3BUS1 97 aa7□□□□□ -1.29
SYNE1-221ENST00000472563 TSPAN13O95857 204 aa7□□□□□ -1.29
SYNE1-221ENST00000472563 PRR4Q16378 134 aa7□□□□□ -1.29
SYNE1-221ENST00000472563 DAND5Q8N907 189 aa7□□□□□ -1.29
SYNE1-221ENST00000472563 LPAP08519 4548 aa6.99□□□□□ -1.29
SYNE1-221ENST00000472563 TRBV10-3A0A0K0K1G6 114 aa6.99□□□□□ -1.29
SYNE1-221ENST00000472563 TRBV10-2A0A0K0K1G8 114 aa6.99□□□□□ -1.29
SYNE1-221ENST00000472563 E9PLD3 99 aa6.99□□□□□ -1.29
SYNE1-221ENST00000472563 KRTAP4-16G5E9R7 235 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-221ENST00000472563 S100A12P80511 92 aa6.98□□□□□ -1.29
SYNE1-221ENST00000472563 SPRR4Q96PI1 79 aa6.98□□□□□ -1.29
SYNE1-221ENST00000472563 MIEN1Q9BRT3 115 aa6.98□□□□□ -1.29
SYNE1-221ENST00000472563 A0A0J9YXY3 114 aa6.97□□□□□ -1.29
SYNE1-221ENST00000472563 ETDCA0A1B0GVM5 59 aa6.97□□□□□ -1.29
SYNE1-221ENST00000472563 NDUFC2O95298 119 aa6.97□□□□□ -1.29
SYNE1-221ENST00000472563 COA6Q5JTJ3 125 aaKnown RBP6.97□□□□□ -1.29
SYNE1-221ENST00000472563 LINC01545Q5VT33 79 aa6.97□□□□□ -1.29
SYNE1-221ENST00000472563 PET117Q6UWS5 81 aa6.97□□□□□ -1.29
SYNE1-221ENST00000472563 LINC00304Q8N9R0 145 aa6.97□□□□□ -1.29
SYNE1-221ENST00000472563 SPANXB1Q9NS25 103 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-221ENST00000472563 ZNF706Q9Y5V0 76 aaPredicted RBP6.97□□□□□ -1.29
SYNE1-221ENST00000472563 DDTP30046 118 aa6.96□□□□□ -1.3
SYNE1-221ENST00000472563 CTAG1AP78358 180 aa6.96□□□□□ -1.3
SYNE1-221ENST00000472563 ADAMTSL4-AS1Q5T5F5 129 aa6.95□□□□□ -1.3
SYNE1-221ENST00000472563 SMCR5Q8TEV8 140 aa6.95□□□□□ -1.3
SYNE1-221ENST00000472563 B5MCH6 92 aa6.94□□□□□ -1.3
SYNE1-221ENST00000472563 IGLV6-57P01721 117 aa6.94□□□□□ -1.3
SYNE1-221ENST00000472563 SOSTDC1Q6X4U4 206 aa6.94□□□□□ -1.3
SYNE1-221ENST00000472563 EIF4EBP3O60516 100 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-221ENST00000472563 C3orf79P0CE67 100 aa6.93□□□□□ -1.3
SYNE1-221ENST00000472563 S100A7L2Q5SY68 101 aa6.93□□□□□ -1.3
SYNE1-221ENST00000472563 C3orf22Q8N5N4 141 aa6.93□□□□□ -1.3
SYNE1-221ENST00000472563 TIMM17BO60830 172 aa6.92□□□□□ -1.3
SYNE1-221ENST00000472563 LITAFQ99732 161 aa6.92□□□□□ -1.3
SYNE1-221ENST00000472563 LINC00483Q53H64 154 aa6.91□□□□□ -1.3
SYNE1-221ENST00000472563 SPAG11AQ6PDA7 123 aa6.91□□□□□ -1.3
SYNE1-221ENST00000472563 TRAV23DV6A0A075B6W5 121 aa6.9□□□□□ -1.3
SYNE1-221ENST00000472563 ZNF815PA8K554 130 aa6.9□□□□□ -1.3
SYNE1-221ENST00000472563 ERC2-IT1O76042 136 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms