RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 J3QQQ9 107 aa9.43□□□□□ -0.9
SDC3-203ENST00000471567 LINC00158P58513 81 aa9.43□□□□□ -0.9
SDC3-203ENST00000471567 OXTP01178 125 aa9.42□□□□□ -0.9
SDC3-203ENST00000471567 NMUP48645 174 aa9.42□□□□□ -0.9
SDC3-203ENST00000471567 TSPEAR-AS2P59090 65 aa9.42□□□□□ -0.9
SDC3-203ENST00000471567 KRTDAPP60985 99 aa9.42□□□□□ -0.9
SDC3-203ENST00000471567 SRSF9Q13242 221 aaKnown RBP eCLIP9.42□□□□□ -0.9
SDC3-203ENST00000471567 C1orf137Q5JT78 98 aa9.42□□□□□ -0.9
SDC3-203ENST00000471567 SPINK6Q6UWN8 80 aa9.42□□□□□ -0.9
SDC3-203ENST00000471567 MRPL55Q7Z7F7 128 aaKnown RBP9.42□□□□□ -0.9
SDC3-203ENST00000471567 KRTAP11-1Q8IUC1 163 aa9.42□□□□□ -0.9
SDC3-203ENST00000471567 E9PLD3 99 aa9.41□□□□□ -0.9
SDC3-203ENST00000471567 LGALS3P17931 250 aaKnown RBP9.41□□□□□ -0.9
SDC3-203ENST00000471567 MEIG1Q5JSS6 88 aa9.41□□□□□ -0.9
SDC3-203ENST00000471567 MYCBP2O75592 4640 aa9.4□□□□□ -0.9
SDC3-203ENST00000471567 SMIM13P0DJ93 91 aa9.4□□□□□ -0.9
SDC3-203ENST00000471567 RPL24P83731 157 aaKnown RBP9.4□□□□□ -0.9
SDC3-203ENST00000471567 NKAPP1Q8N9T2 125 aa9.4□□□□□ -0.9
SDC3-203ENST00000471567 PKHD1L1Q86WI1 4243 aa9.39□□□□□ -0.91
SDC3-203ENST00000471567 C20orf202A1L168 122 aa9.39□□□□□ -0.91
SDC3-203ENST00000471567 AKR1D1P51857 326 aa9.39□□□□□ -0.91
SDC3-203ENST00000471567 A0A0U1RRA0 63 aa9.38□□□□□ -0.91
SDC3-203ENST00000471567 LOC105371267A0A1B0GV96 52 aa9.38□□□□□ -0.91
SDC3-203ENST00000471567 IGLV7-43P04211 117 aa9.38□□□□□ -0.91
SDC3-203ENST00000471567 VPREB1P12018 145 aa9.38□□□□□ -0.91
SDC3-203ENST00000471567 LINC00167Q96N53 147 aa9.38□□□□□ -0.91
SDC3-203ENST00000471567 J3QL48 77 aa9.37□□□□□ -0.91
SDC3-203ENST00000471567 MIR7-3HGQ8N6C7 128 aa9.37□□□□□ -0.91
SDC3-203ENST00000471567 DMBT1Q9UGM3 2413 aaPredicted RBP9.36□□□□□ -0.91
SDC3-203ENST00000471567 GAGE10A6NGK3 116 aa9.34□□□□□ -0.91
SDC3-203ENST00000471567 RPL37AP8A6NKH3 93 aa9.34□□□□□ -0.91
SDC3-203ENST00000471567 REG3GQ6UW15 175 aa9.34□□□□□ -0.91
SDC3-203ENST00000471567 LOC107984156A0A0G2JMH3 177 aa9.33□□□□□ -0.92
SDC3-203ENST00000471567 ARL17AQ8IVW1 177 aa9.33□□□□□ -0.92
SDC3-203ENST00000471567 Q8NDZ9 215 aa9.33□□□□□ -0.92
SDC3-203ENST00000471567 DIRC1Q969H9 104 aa9.33□□□□□ -0.92
SDC3-203ENST00000471567 A0A0J9YXY3 114 aa9.32□□□□□ -0.92
SDC3-203ENST00000471567 BOD1L2Q8IYS8 172 aa9.32□□□□□ -0.92
SDC3-203ENST00000471567 IGLV1-50A0A075B6I6 118 aa9.31□□□□□ -0.92
SDC3-203ENST00000471567 BCE1O60756 84 aa9.31□□□□□ -0.92
SDC3-203ENST00000471567 SCGB1D1O95968 90 aa9.31□□□□□ -0.92
SDC3-203ENST00000471567 JOSD1Q15040 202 aaPredicted RBP9.31□□□□□ -0.92
SDC3-203ENST00000471567 LRP1Q07954 4544 aaKnown RBP9.31□□□□□ -0.92
SDC3-203ENST00000471567 IGKV2D-26A0A0A0MRZ7 120 aa9.3□□□□□ -0.92
SDC3-203ENST00000471567 M0R378 163 aa9.3□□□□□ -0.92
SDC3-203ENST00000471567 ZNF861PO60384 105 aa9.3□□□□□ -0.92
SDC3-203ENST00000471567 LINC01600Q96MT4 127 aa9.3□□□□□ -0.92
SDC3-203ENST00000471567 FAT3Q8TDW7 4589 aa9.3□□□□□ -0.92
SDC3-203ENST00000471567 H0Y9J4 135 aa9.29□□□□□ -0.92
SDC3-203ENST00000471567 SMIM6P0DI80 62 aa9.29□□□□□ -0.92
SDC3-203ENST00000471567 DAND5Q8N907 189 aa9.29□□□□□ -0.92
SDC3-203ENST00000471567 IGKV2-28A0A075B6P5 120 aa9.28□□□□□ -0.92
SDC3-203ENST00000471567 ZNF815PA8K554 130 aa9.28□□□□□ -0.92
SDC3-203ENST00000471567 TIMM17BO60830 172 aa9.28□□□□□ -0.92
SDC3-203ENST00000471567 IGKV2D-28P01615 120 aa9.28□□□□□ -0.92
SDC3-203ENST00000471567 ATOH7Q8N100 152 aa9.28□□□□□ -0.92
SDC3-203ENST00000471567 MIEN1Q9BRT3 115 aa9.28□□□□□ -0.92
SDC3-203ENST00000471567 RPL28P46779 137 aaKnown RBP9.27□□□□□ -0.93
SDC3-203ENST00000471567 ANKRD39Q53RE8 183 aa9.27□□□□□ -0.93
SDC3-203ENST00000471567 MT1HL1P0DM35 61 aa9.26□□□□□ -0.93
SDC3-203ENST00000471567 ADAMTSL4-AS1Q5T5F5 129 aa9.26□□□□□ -0.93
SDC3-203ENST00000471567 NDUFC2O95298 119 aa9.25□□□□□ -0.93
SDC3-203ENST00000471567 PYY3Q5JQD4 70 aa9.25□□□□□ -0.93
SDC3-203ENST00000471567 LITAFQ99732 161 aa9.25□□□□□ -0.93
SDC3-203ENST00000471567 TTTY13Q9BZ97 58 aa9.25□□□□□ -0.93
SDC3-203ENST00000471567 TMEM126AQ9H061 195 aa9.25□□□□□ -0.93
SDC3-203ENST00000471567 TRBV10-2A0A0K0K1G8 114 aa9.24□□□□□ -0.93
SDC3-203ENST00000471567 NCR3O14931 201 aa9.24□□□□□ -0.93
SDC3-203ENST00000471567 S100A12P80511 92 aa9.24□□□□□ -0.93
SDC3-203ENST00000471567 HSBP1L1C9JCN9 74 aa9.23□□□□□ -0.93
SDC3-203ENST00000471567 TMEM238C9JI98 176 aa9.23□□□□□ -0.93
SDC3-203ENST00000471567 UBE2AP49459 152 aa9.23□□□□□ -0.93
SDC3-203ENST00000471567 SOSTDC1Q6X4U4 206 aa9.23□□□□□ -0.93
SDC3-203ENST00000471567 KRTAP13-1Q8IUC0 172 aa9.23□□□□□ -0.93
SDC3-203ENST00000471567 SPANXB1Q9NS25 103 aaPredicted RBP9.23□□□□□ -0.93
SDC3-203ENST00000471567 PRYO14603 147 aa9.22□□□□□ -0.93
SDC3-203ENST00000471567 KRTAP10-8P60410 259 aa9.22□□□□□ -0.93
SDC3-203ENST00000471567 KCNQ1DNQ9H478 68 aa9.22□□□□□ -0.93
SDC3-203ENST00000471567 SCGB1D4Q6XE38 83 aa9.21□□□□□ -0.94
SDC3-203ENST00000471567 LINC00308Q8TCZ7 52 aa9.21□□□□□ -0.94
SDC3-203ENST00000471567 TRBV10-3A0A0K0K1G6 114 aa9.2□□□□□ -0.94
SDC3-203ENST00000471567 EIF4EBP3O60516 100 aaPredicted RBP9.2□□□□□ -0.94
SDC3-203ENST00000471567 NPC2P61916 151 aa9.2□□□□□ -0.94
SDC3-203ENST00000471567 FAM19A1Q7Z5A9 133 aa9.2□□□□□ -0.94
SDC3-203ENST00000471567 PCP2Q8IVA1 136 aa9.2□□□□□ -0.94
SDC3-203ENST00000471567 VAMP8Q9BV40 100 aa9.2□□□□□ -0.94
SDC3-203ENST00000471567 HERC1Q15751 4861 aa9.19□□□□□ -0.94
SDC3-203ENST00000471567 KRTAP1-4P0C5Y4 121 aa9.19□□□□□ -0.94
SDC3-203ENST00000471567 SPANXDQ9BXN6 97 aa9.19□□□□□ -0.94
SDC3-203ENST00000471567 SPANXCQ9NY87 97 aa9.19□□□□□ -0.94
SDC3-203ENST00000471567 DDTP30046 118 aa9.18□□□□□ -0.94
SDC3-203ENST00000471567 SPRR1AP35321 89 aa9.18□□□□□ -0.94
SDC3-203ENST00000471567 Q6ZVH6 145 aa9.18□□□□□ -0.94
SDC3-203ENST00000471567 C12orf57Q99622 126 aa9.18□□□□□ -0.94
SDC3-203ENST00000471567 PRLHP81277 87 aa9.17□□□□□ -0.94
SDC3-203ENST00000471567 S100A7L2Q5SY68 101 aa9.17□□□□□ -0.94
SDC3-203ENST00000471567 LINC00518Q8N0U6 118 aa9.17□□□□□ -0.94
SDC3-203ENST00000471567 LINC00337Q8N6G1 96 aa9.17□□□□□ -0.94
SDC3-203ENST00000471567 COPS9Q8WXC6 57 aa9.17□□□□□ -0.94
SDC3-203ENST00000471567 PPDPFQ9H3Y8 114 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms