RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 SCGB3A1Q96QR1 104 aa2.91□□□□□ -1.94
CCDC39-202ENST00000471307 HIST1H2BLQ99880 126 aa2.91□□□□□ -1.94
CCDC39-202ENST00000471307 SPANXA1Q9NS26 97 aa2.91□□□□□ -1.94
CCDC39-202ENST00000471307 APLNQ9ULZ1 77 aa2.91□□□□□ -1.94
CCDC39-202ENST00000471307 DNAH7Q8WXX0 4024 aa2.9□□□□□ -1.94
CCDC39-202ENST00000471307 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.9□□□□□ -1.95
CCDC39-202ENST00000471307 IGKV2-29A2NJV5 120 aaPredicted RBP2.9□□□□□ -1.95
CCDC39-202ENST00000471307 TMEM262E9PQX1 116 aa2.9□□□□□ -1.95
CCDC39-202ENST00000471307 FGF6P10767 208 aa2.9□□□□□ -1.95
CCDC39-202ENST00000471307 DDTP30046 118 aa2.9□□□□□ -1.95
CCDC39-202ENST00000471307 AKR1D1P51857 326 aa2.9□□□□□ -1.95
CCDC39-202ENST00000471307 RPL39P62891 51 aaKnown RBP2.9□□□□□ -1.95
CCDC39-202ENST00000471307 MRPS36P82909 103 aaKnown RBP2.9□□□□□ -1.95
CCDC39-202ENST00000471307 AMMECR1LQ6DCA0 310 aa2.9□□□□□ -1.95
CCDC39-202ENST00000471307 SPATA12Q7Z6I5 190 aa2.9□□□□□ -1.95
CCDC39-202ENST00000471307 IFI27L1Q96BM0 104 aa2.9□□□□□ -1.95
CCDC39-202ENST00000471307 C8orf17Q9NRJ1 99 aa2.9□□□□□ -1.95
CCDC39-202ENST00000471307 UBE2D4Q9Y2X8 147 aa2.9□□□□□ -1.95
CCDC39-202ENST00000471307 DYNC2H1Q8NCM8 4307 aaKnown RBP2.89□□□□□ -1.95
CCDC39-202ENST00000471307 A0A087WX48 190 aa2.89□□□□□ -1.95
CCDC39-202ENST00000471307 TRAV12-1A0A0B4J245 112 aa2.89□□□□□ -1.95
CCDC39-202ENST00000471307 C3orf84H3BNL1 204 aa2.89□□□□□ -1.95
CCDC39-202ENST00000471307 SYS1-DBNDD2H3BUS1 97 aa2.89□□□□□ -1.95
CCDC39-202ENST00000471307 K7EP13 123 aa2.89□□□□□ -1.95
CCDC39-202ENST00000471307 CCL25O15444 150 aa2.89□□□□□ -1.95
CCDC39-202ENST00000471307 ZNF664Q8N3J9 261 aa2.89□□□□□ -1.95
CCDC39-202ENST00000471307 OR5A1Q8NGJ0 315 aa2.89□□□□□ -1.95
CCDC39-202ENST00000471307 OR10D4PQ8NGN7 298 aa2.89□□□□□ -1.95
CCDC39-202ENST00000471307 UPK3BQ9BT76 320 aa2.89□□□□□ -1.95
CCDC39-202ENST00000471307 CDC42SE2Q9NRR3 84 aa2.89□□□□□ -1.95
CCDC39-202ENST00000471307 MRPS16Q9Y3D3 137 aaKnown RBP2.89□□□□□ -1.95
CCDC39-202ENST00000471307 LOC105371267A0A1B0GV96 52 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 C20orf202A1L168 122 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 TLX1NBP0CAT3 122 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 C3orf79P0CE67 100 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 MP68P56378 58 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 KRTDAPP60985 99 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 RBX1P62877 108 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 SEC11AP67812 179 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 LINC00483Q53H64 154 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 RNASE13Q5GAN3 156 aaKnown RBP2.88□□□□□ -1.95
CCDC39-202ENST00000471307 LINC01556Q5JQF7 62 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 C1orf195Q5TG92 126 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 LGALS9CQ6DKI2 356 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 LINC00337Q8N6G1 96 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 AMELXQ99217 191 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 C2orf88Q9BSF0 95 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 CST9LQ9H4G1 147 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 LINC00588Q9Y4M8 146 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 CSMD3Q7Z407 3707 aa2.88□□□□□ -1.95
CCDC39-202ENST00000471307 ANGP03950 147 aaKnown RBP2.87□□□□□ -1.95
CCDC39-202ENST00000471307 PLNP26678 52 aa2.87□□□□□ -1.95
CCDC39-202ENST00000471307 SYCNQ0VAF6 134 aa2.87□□□□□ -1.95
CCDC39-202ENST00000471307 JOSD1Q15040 202 aaPredicted RBP2.87□□□□□ -1.95
CCDC39-202ENST00000471307 DEFB116Q30KQ4 102 aa2.87□□□□□ -1.95
CCDC39-202ENST00000471307 LINC01545Q5VT33 79 aa2.87□□□□□ -1.95
CCDC39-202ENST00000471307 ZFAND6Q6FIF0 208 aa2.87□□□□□ -1.95
CCDC39-202ENST00000471307 Q6ZUT4 128 aa2.87□□□□□ -1.95
CCDC39-202ENST00000471307 FAM19A3Q7Z5A8 133 aa2.87□□□□□ -1.95
CCDC39-202ENST00000471307 WFDC10BQ8IUB3 73 aa2.87□□□□□ -1.95
CCDC39-202ENST00000471307 UBE2DNLQ8IWF7 75 aa2.87□□□□□ -1.95
CCDC39-202ENST00000471307 C10orf126Q8N4M7 172 aa2.87□□□□□ -1.95
CCDC39-202ENST00000471307 C15orf56Q8N910 161 aa2.87□□□□□ -1.95
CCDC39-202ENST00000471307 RBM12B-AS1Q9P1G2 102 aa2.87□□□□□ -1.95
CCDC39-202ENST00000471307 LINC00959A0A1B0GUT2 108 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 IBA57-AS1B1ANH7 110 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 C8orf87E5RJ46 101 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 F8VRH5 84 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 DPM2O94777 84 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 IGHV3-30P01768 117 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 IGHV3-33P01772 117 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 IGKCP01834 107 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 IGLC3P0DOY3 106 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 IGHV3-30-3P0DP02 117 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 IGHV3-30-5P0DP03 117 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 UBE2D1P51668 147 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 HERVK_113P63121 156 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 SS18Q15532 418 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 MIAQ16674 131 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 LINC00269Q8N2A0 174 aa2.86□□□□□ -1.95
CCDC39-202ENST00000471307 MRPL35Q9NZE8 188 aaKnown RBP2.86□□□□□ -1.95
CCDC39-202ENST00000471307 ZNF706Q9Y5V0 76 aaPredicted RBP2.86□□□□□ -1.95
CCDC39-202ENST00000471307 TRAV13-1A0A0B4J241 112 aa2.85□□□□□ -1.95
CCDC39-202ENST00000471307 H3BRM9 83 aa2.85□□□□□ -1.95
CCDC39-202ENST00000471307 CRPP02741 224 aa2.85□□□□□ -1.95
CCDC39-202ENST00000471307 PYY3Q5JQD4 70 aa2.85□□□□□ -1.95
CCDC39-202ENST00000471307 ENHOQ6UWT2 76 aa2.85□□□□□ -1.95
CCDC39-202ENST00000471307 IGKV3OR2-268A0A0C4DH90 116 aa2.84□□□□□ -1.95
CCDC39-202ENST00000471307 C11orf86A6NJI1 115 aa2.84□□□□□ -1.95
CCDC39-202ENST00000471307 K7ERS5 55 aa2.84□□□□□ -1.95
CCDC39-202ENST00000471307 SMIM6P0DI80 62 aa2.84□□□□□ -1.95
CCDC39-202ENST00000471307 ZNF22P17026 224 aaPredicted RBP2.84□□□□□ -1.95
CCDC39-202ENST00000471307 S100A12P80511 92 aa2.84□□□□□ -1.95
CCDC39-202ENST00000471307 LUZP6Q538Z0 58 aa2.84□□□□□ -1.95
CCDC39-202ENST00000471307 TMEM170BQ5T4T1 132 aa2.84□□□□□ -1.95
CCDC39-202ENST00000471307 UBE2WQ96B02 151 aa2.84□□□□□ -1.95
CCDC39-202ENST00000471307 RMI2Q96E14 147 aa2.84□□□□□ -1.95
CCDC39-202ENST00000471307 PMCHL2Q9BQD1 86 aa2.84□□□□□ -1.95
CCDC39-202ENST00000471307 PLECQ15149 4684 aaKnown RBP2.83□□□□□ -1.96
CCDC39-202ENST00000471307 VPS13DQ5THJ4 4388 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms