RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 RYR3Q15413 4870 aa3.13□□□□□ -1.91
SF3B1-208ENST00000470268 IGHV3OR16-9A0A0B4J2B5 98 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 TMEM223A0PJW6 202 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 ZNF815PA8K554 130 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 E9PLD3 99 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 CRPP02741 224 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 SPINK8P0C7L1 97 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 SMIM13P0DJ93 91 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 XCL1P47992 114 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 WFDC2Q14508 124 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 MIAQ16674 131 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 FAM19A3Q7Z5A8 133 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 CDKN2A-AS1Q9UH64 79 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 IGKV2D-24A0A075B6R9 120 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 MYMXA0A1B0GTQ4 84 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 TTC32Q5I0X7 151 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 KRTAP5-11Q6L8G4 156 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 NFE4Q86UQ8 179 aa3.12□□□□□ -1.91
SF3B1-208ENST00000470268 DNAH6Q9C0G6 4158 aa3.11□□□□□ -1.91
SF3B1-208ENST00000470268 IGLV5-45A0A087WSX0 123 aa3.11□□□□□ -1.91
SF3B1-208ENST00000470268 TRAV8-4A0A0B4J246 113 aa3.11□□□□□ -1.91
SF3B1-208ENST00000470268 TINCRA0A1B0GVN0 87 aa3.11□□□□□ -1.91
SF3B1-208ENST00000470268 F8W1H4 67 aa3.11□□□□□ -1.91
SF3B1-208ENST00000470268 KRTAP10-6P60371 365 aaPredicted RBP3.11□□□□□ -1.91
SF3B1-208ENST00000470268 SS18Q15532 418 aa3.11□□□□□ -1.91
SF3B1-208ENST00000470268 CD164L2Q6UWJ8 174 aa3.11□□□□□ -1.91
SF3B1-208ENST00000470268 C5orf38Q86SI9 138 aa3.11□□□□□ -1.91
SF3B1-208ENST00000470268 PPDPFQ9H3Y8 114 aa3.11□□□□□ -1.91
SF3B1-208ENST00000470268 J3QQQ9 107 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 RTL8CO15255 209 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 C6orf223Q8N319 242 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 NHP2Q9NX24 153 aaKnown RBP3.1□□□□□ -1.91
SF3B1-208ENST00000470268 ERG28Q9UKR5 140 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 DNAH17Q9UFH2 4485 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 FAT2Q9NYQ8 4349 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 A0A087WZ39 114 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 LRCOL1A6NCL2 159 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 LECT2O14960 151 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 NPC2P61916 151 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 HERVK_113P63121 156 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 ETDBQ3ZM63 59 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 C1orf134Q5TEV5 83 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 SCGB1D4Q6XE38 83 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 LINC00336Q6ZUF6 198 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 CEND1Q8N111 149 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 DAND5Q8N907 189 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 C15orf56Q8N910 161 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 HIST1H4GQ99525 98 aa3.1□□□□□ -1.91
SF3B1-208ENST00000470268 FRAS1Q86XX4 4008 aa3.09□□□□□ -1.91
SF3B1-208ENST00000470268 SMIM1B2RUZ4 78 aa3.09□□□□□ -1.91
SF3B1-208ENST00000470268 LEPROTO15243 131 aa3.09□□□□□ -1.91
SF3B1-208ENST00000470268 ADAMTSL4-AS1Q5T5F5 129 aa3.09□□□□□ -1.91
SF3B1-208ENST00000470268 SFTA2Q6UW10 78 aa3.09□□□□□ -1.91
SF3B1-208ENST00000470268 LINC00526Q96FQ7 95 aa3.09□□□□□ -1.91
SF3B1-208ENST00000470268 ZNF625Q96I27 306 aaPredicted RBP3.09□□□□□ -1.91
SF3B1-208ENST00000470268 HIGD1BQ9P298 99 aa3.09□□□□□ -1.91
SF3B1-208ENST00000470268 IGKV2D-30A0A075B6S6 120 aa3.09□□□□□ -1.92
SF3B1-208ENST00000470268 COX7A2LO14548 114 aa3.09□□□□□ -1.92
SF3B1-208ENST00000470268 MT-ATP8P03928 68 aa3.09□□□□□ -1.92
SF3B1-208ENST00000470268 LGALS3P17931 250 aaKnown RBP3.09□□□□□ -1.92
SF3B1-208ENST00000470268 HERVK_113P61574 105 aa3.09□□□□□ -1.92
SF3B1-208ENST00000470268 KIAA0087Q14695 138 aa3.09□□□□□ -1.92
SF3B1-208ENST00000470268 PRO0461Q9UI25 63 aa3.09□□□□□ -1.92
SF3B1-208ENST00000470268 IGHV1-58A0A0C4DH39 117 aa3.08□□□□□ -1.92
SF3B1-208ENST00000470268 A0A0J9YXY3 114 aa3.08□□□□□ -1.92
SF3B1-208ENST00000470268 A0A1B0GWB2 263 aa3.08□□□□□ -1.92
SF3B1-208ENST00000470268 H3BMG7 143 aa3.08□□□□□ -1.92
SF3B1-208ENST00000470268 PSCAO43653 123 aa3.08□□□□□ -1.92
SF3B1-208ENST00000470268 HIGD2BQ4VC39 106 aa3.08□□□□□ -1.92
SF3B1-208ENST00000470268 RMI2Q96E14 147 aa3.08□□□□□ -1.92
SF3B1-208ENST00000470268 LITAFQ99732 161 aa3.08□□□□□ -1.92
SF3B1-208ENST00000470268 ANAPC13Q9BS18 74 aa3.08□□□□□ -1.92
SF3B1-208ENST00000470268 DNAH11Q96DT5 4516 aa3.07□□□□□ -1.92
SF3B1-208ENST00000470268 A0A087WTM6 91 aa3.07□□□□□ -1.92
SF3B1-208ENST00000470268 APOMO95445 188 aa3.07□□□□□ -1.92
SF3B1-208ENST00000470268 FUSP35637 526 aaKnown RBP eCLIP3.07□□□□□ -1.92
SF3B1-208ENST00000470268 SRSF9Q13242 221 aaKnown RBP eCLIP3.07□□□□□ -1.92
SF3B1-208ENST00000470268 TAL2Q16559 108 aa3.07□□□□□ -1.92
SF3B1-208ENST00000470268 OR13C6PQ8NH95 151 aa3.07□□□□□ -1.92
SF3B1-208ENST00000470268 NDUFA12Q9UI09 145 aa3.07□□□□□ -1.92
SF3B1-208ENST00000470268 GVQW2A0A096LPI5 108 aaPredicted RBP3.07□□□□□ -1.92
SF3B1-208ENST00000470268 XGP55808 180 aa3.07□□□□□ -1.92
SF3B1-208ENST00000470268 C2orf82Q6UX34 121 aa3.07□□□□□ -1.92
SF3B1-208ENST00000470268 MUSTN1Q8IVN3 82 aa3.07□□□□□ -1.92
SF3B1-208ENST00000470268 LINC01561Q8N1V8 128 aa3.07□□□□□ -1.92
SF3B1-208ENST00000470268 TOMM7Q9P0U1 55 aa3.07□□□□□ -1.92
SF3B1-208ENST00000470268 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.06□□□□□ -1.92
SF3B1-208ENST00000470268 CFC1BP0CG36 223 aa3.06□□□□□ -1.92
SF3B1-208ENST00000470268 CFC1P0CG37 223 aa3.06□□□□□ -1.92
SF3B1-208ENST00000470268 SPAG11BQ08648 103 aa3.06□□□□□ -1.92
SF3B1-208ENST00000470268 Q8IZM0 81 aa3.06□□□□□ -1.92
SF3B1-208ENST00000470268 Q8N814 137 aa3.06□□□□□ -1.92
SF3B1-208ENST00000470268 PRO0628Q9UI54 55 aa3.06□□□□□ -1.92
SF3B1-208ENST00000470268 PKD1P98161 4303 aa3.06□□□□□ -1.92
SF3B1-208ENST00000470268 H7C2G1 150 aa3.05□□□□□ -1.92
SF3B1-208ENST00000470268 UNQ6190/PRO20217Q6UXQ8 127 aa3.05□□□□□ -1.92
SF3B1-208ENST00000470268 COX7B2Q8TF08 81 aa3.05□□□□□ -1.92
SF3B1-208ENST00000470268 C9orf116Q5BN46 136 aaPredicted RBP3.05□□□□□ -1.92
SF3B1-208ENST00000470268 SOSTDC1Q6X4U4 206 aa3.05□□□□□ -1.92
SF3B1-208ENST00000470268 Q6ZRU5 148 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms