RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 UNQ6190/PRO20217Q6UXQ8 127 aa12.24□□□□□ -0.45
COL9A3-205ENST00000466192 LINC00588Q9Y4M8 146 aa12.23□□□□□ -0.45
COL9A3-205ENST00000466192 TEX49A0A1B0GTD5 131 aa12.23□□□□□ -0.45
COL9A3-205ENST00000466192 H3BT86 120 aa12.22□□□□□ -0.45
COL9A3-205ENST00000466192 DNAH10OSP0CZ25 163 aa12.22□□□□□ -0.45
COL9A3-205ENST00000466192 RPL28P46779 137 aaKnown RBP12.22□□□□□ -0.45
COL9A3-205ENST00000466192 OR13C6PQ8NH95 151 aa12.22□□□□□ -0.45
COL9A3-205ENST00000466192 B9D2Q9BPU9 175 aa12.22□□□□□ -0.45
COL9A3-205ENST00000466192 SMIM11BQ8TCY0 68 aa12.21□□□□□ -0.45
COL9A3-205ENST00000466192 PRR3P79522 188 aaKnown RBP12.19□□□□□ -0.46
COL9A3-205ENST00000466192 FAM240AA0A1B0GVK7 77 aa12.19□□□□□ -0.46
COL9A3-205ENST00000466192 FAM218AQ96MZ4 157 aa12.19□□□□□ -0.46
COL9A3-205ENST00000466192 DNHD1Q96M86 4753 aa12.18□□□□□ -0.46
COL9A3-205ENST00000466192 DNAH1Q9P2D7 4330 aa12.17□□□□□ -0.46
COL9A3-205ENST00000466192 C1orf43Q9BWL3 253 aa12.17□□□□□ -0.46
COL9A3-205ENST00000466192 LYSTQ99698 3801 aa12.17□□□□□ -0.46
COL9A3-205ENST00000466192 HIGD2BQ4VC39 106 aa12.16□□□□□ -0.46
COL9A3-205ENST00000466192 IGKV2D-24A0A075B6R9 120 aa12.15□□□□□ -0.46
COL9A3-205ENST00000466192 DYNC2H1Q8NCM8 4307 aaKnown RBP12.15□□□□□ -0.46
COL9A3-205ENST00000466192 C15orf56Q8N910 161 aa12.15□□□□□ -0.47
COL9A3-205ENST00000466192 PRKDCP78527 4128 aaKnown RBP12.14□□□□□ -0.47
COL9A3-205ENST00000466192 ZNF561-AS1K7EIQ3 104 aa12.14□□□□□ -0.47
COL9A3-205ENST00000466192 NDUFC2O95298 119 aa12.14□□□□□ -0.47
COL9A3-205ENST00000466192 Q8NDZ9 215 aa12.14□□□□□ -0.47
COL9A3-205ENST00000466192 Q9HAA7 133 aa12.14□□□□□ -0.47
COL9A3-205ENST00000466192 TRACP01848 142 aa12.13□□□□□ -0.47
COL9A3-205ENST00000466192 SMIM20Q8N5G0 67 aa12.13□□□□□ -0.47
COL9A3-205ENST00000466192 C6orf48Q9UBA6 75 aa12.13□□□□□ -0.47
COL9A3-205ENST00000466192 CSMD3Q7Z407 3707 aa12.13□□□□□ -0.47
COL9A3-205ENST00000466192 GVQW2A0A096LPI5 108 aaPredicted RBP12.12□□□□□ -0.47
COL9A3-205ENST00000466192 NCR3O14931 201 aa12.11□□□□□ -0.47
COL9A3-205ENST00000466192 UPK3BQ9BT76 320 aa12.11□□□□□ -0.47
COL9A3-205ENST00000466192 A0A087WYN8 130 aa12.11□□□□□ -0.47
COL9A3-205ENST00000466192 TRBV7-7A0A0K0K1E9 115 aa12.11□□□□□ -0.47
COL9A3-205ENST00000466192 CAMK2N2Q96S95 79 aa12.11□□□□□ -0.47
COL9A3-205ENST00000466192 H0YGX0 51 aa12.09□□□□□ -0.47
COL9A3-205ENST00000466192 MUC7Q8TAX7 377 aa12.09□□□□□ -0.47
COL9A3-205ENST00000466192 TMEM126AQ9H061 195 aa12.09□□□□□ -0.47
COL9A3-205ENST00000466192 BAALC-AS2P0C853 105 aa12.08□□□□□ -0.48
COL9A3-205ENST00000466192 XAGE1AQ9HD64 81 aa12.07□□□□□ -0.48
COL9A3-205ENST00000466192 Q6ZRU5 148 aa12.06□□□□□ -0.48
COL9A3-205ENST00000466192 MEGF8Q7Z7M0 2845 aa12.06□□□□□ -0.48
COL9A3-205ENST00000466192 DNAL4O96015 105 aa12.06□□□□□ -0.48
COL9A3-205ENST00000466192 C2orf48Q96LS8 159 aa12.06□□□□□ -0.48
COL9A3-205ENST00000466192 APLNQ9ULZ1 77 aa12.06□□□□□ -0.48
COL9A3-205ENST00000466192 S100A7L2Q5SY68 101 aa12.05□□□□□ -0.48
COL9A3-205ENST00000466192 PLECQ15149 4684 aaKnown RBP12.05□□□□□ -0.48
COL9A3-205ENST00000466192 LECT2O14960 151 aa12.05□□□□□ -0.48
COL9A3-205ENST00000466192 ACYP1P07311 99 aa12.05□□□□□ -0.48
COL9A3-205ENST00000466192 IMUPQ9GZP8 106 aa12.05□□□□□ -0.48
COL9A3-205ENST00000466192 TENM2Q9NT68 2774 aa12.04□□□□□ -0.48
COL9A3-205ENST00000466192 DNAH7Q8WXX0 4024 aa12.04□□□□□ -0.48
COL9A3-205ENST00000466192 CASC10Q5T4H9 136 aa12.03□□□□□ -0.48
COL9A3-205ENST00000466192 RPL18AQ02543 176 aaKnown RBP12.03□□□□□ -0.48
COL9A3-205ENST00000466192 C22orf24Q9Y442 160 aa12.02□□□□□ -0.48
COL9A3-205ENST00000466192 C6orf99Q4VX62 202 aa12.01□□□□□ -0.49
COL9A3-205ENST00000466192 DNAH10Q8IVF4 4471 aa12□□□□□ -0.49
COL9A3-205ENST00000466192 SLPIP03973 132 aa11.99□□□□□ -0.49
COL9A3-205ENST00000466192 KRTAP1-5Q9BYS1 174 aa11.99□□□□□ -0.49
COL9A3-205ENST00000466192 F8WDY8 70 aa11.99□□□□□ -0.49
COL9A3-205ENST00000466192 RMI2Q96E14 147 aa11.99□□□□□ -0.49
COL9A3-205ENST00000466192 USP17L23D6RBM5 183 aa11.98□□□□□ -0.49
COL9A3-205ENST00000466192 NDUFC2-KCTD14E9PQ53 114 aa11.98□□□□□ -0.49
COL9A3-205ENST00000466192 SYCNQ0VAF6 134 aa11.98□□□□□ -0.49
COL9A3-205ENST00000466192 IGLV6-57P01721 117 aa11.98□□□□□ -0.49
COL9A3-205ENST00000466192 UBE2DNLQ8IWF7 75 aa11.98□□□□□ -0.49
COL9A3-205ENST00000466192 STARD9Q9P2P6 4700 aa11.97□□□□□ -0.49
COL9A3-205ENST00000466192 FAM236AA0A1B0GUQ0 79 aa11.97□□□□□ -0.49
COL9A3-205ENST00000466192 FAM236BA0A1B0GV22 79 aa11.97□□□□□ -0.49
COL9A3-205ENST00000466192 Q6ZRP5 223 aa11.96□□□□□ -0.5
COL9A3-205ENST00000466192 SDIM1Q6ZPB5 146 aa11.95□□□□□ -0.5
COL9A3-205ENST00000466192 TRBV10-3A0A0K0K1G6 114 aa11.95□□□□□ -0.5
COL9A3-205ENST00000466192 NUPR2A6NF83 97 aa11.95□□□□□ -0.5
COL9A3-205ENST00000466192 LINC00643Q86TS7 51 aa11.95□□□□□ -0.5
COL9A3-205ENST00000466192 Q8N814 137 aa11.95□□□□□ -0.5
COL9A3-205ENST00000466192 VPREB1P12018 145 aa11.93□□□□□ -0.5
COL9A3-205ENST00000466192 C9orf129Q5T035 196 aaKnown RBP11.93□□□□□ -0.5
COL9A3-205ENST00000466192 ORMDL1Q9P0S3 153 aa11.93□□□□□ -0.5
COL9A3-205ENST00000466192 C3orf22Q8N5N4 141 aa11.92□□□□□ -0.5
COL9A3-205ENST00000466192 SMCR5Q8TEV8 140 aa11.92□□□□□ -0.5
COL9A3-205ENST00000466192 A0A1B0GX51 115 aa11.92□□□□□ -0.5
COL9A3-205ENST00000466192 UQCRQO14949 82 aa11.91□□□□□ -0.5
COL9A3-205ENST00000466192 TRAV23DV6A0A075B6W5 121 aa11.9□□□□□ -0.5
COL9A3-205ENST00000466192 LINC00167Q96N53 147 aa11.9□□□□□ -0.5
COL9A3-205ENST00000466192 C9orf153Q5TBE3 101 aa11.89□□□□□ -0.51
COL9A3-205ENST00000466192 LINC00575Q6W349 94 aa11.89□□□□□ -0.51
COL9A3-205ENST00000466192 INAFM2P0DMQ5 153 aa11.89□□□□□ -0.51
COL9A3-205ENST00000466192 M0R378 163 aa11.87□□□□□ -0.51
COL9A3-205ENST00000466192 TLX1NBP0CAT3 122 aa11.87□□□□□ -0.51
COL9A3-205ENST00000466192 VPS13DQ5THJ4 4388 aa11.87□□□□□ -0.51
COL9A3-205ENST00000466192 DIRC1Q969H9 104 aa11.86□□□□□ -0.51
COL9A3-205ENST00000466192 ZNF73O43830 326 aaPredicted RBP11.86□□□□□ -0.51
COL9A3-205ENST00000466192 C14orf132Q9NPU4 83 aa11.86□□□□□ -0.51
COL9A3-205ENST00000466192 hADV29S1A0JD25 119 aa11.85□□□□□ -0.51
COL9A3-205ENST00000466192 KRTAP21-3Q3LHN1 58 aa11.85□□□□□ -0.51
COL9A3-205ENST00000466192 OBSCN-AS1Q96MR7 158 aa11.85□□□□□ -0.51
COL9A3-205ENST00000466192 GAGE2AQ6NT46 116 aa11.84□□□□□ -0.51
COL9A3-205ENST00000466192 TMEM256-PLSCR3K7ERE1 68 aa11.84□□□□□ -0.51
COL9A3-205ENST00000466192 PSCAO43653 123 aa11.82□□□□□ -0.52
COL9A3-205ENST00000466192 COX7CP15954 63 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms