RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 S100A9P06702 114 aaKnown RBP0.97□□□□□ -2.25
USP40-211ENST00000464956 MT1GP13640 62 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 RPS19P39019 145 aaKnown RBP0.97□□□□□ -2.25
USP40-211ENST00000464956 IFI27P40305 119 aaPredicted RBP0.97□□□□□ -2.25
USP40-211ENST00000464956 RPL39P62891 51 aaKnown RBP0.97□□□□□ -2.25
USP40-211ENST00000464956 SEC11AP67812 179 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 NHLH2Q02577 135 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 ZC2HC1BQ5TFG8 222 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 MZT2AQ6P582 158 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 LCA10Q71F78 164 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 FA2HQ7L5A8 372 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 BAGE2Q86Y30 109 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 C9orf62Q8N4C0 152 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 COX7B2Q8TF08 81 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 SMIM4Q8WVI0 70 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 PLAC4Q8WY50 150 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 FAM104AQ969W3 186 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 TMEM141Q96I45 108 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 TCEAL7Q9BRU2 100 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 BLOC1S6Q9UL45 172 aa0.97□□□□□ -2.25
USP40-211ENST00000464956 NCR3O14931 201 aa0.96□□□□□ -2.26
USP40-211ENST00000464956 ZNF73O43830 326 aaPredicted RBP0.96□□□□□ -2.26
USP40-211ENST00000464956 PPP1R17O96001 155 aa0.96□□□□□ -2.26
USP40-211ENST00000464956 VBP1P61758 197 aa0.96□□□□□ -2.26
USP40-211ENST00000464956 HERVK_113P63121 156 aa0.96□□□□□ -2.26
USP40-211ENST00000464956 COX17Q14061 63 aa0.96□□□□□ -2.26
USP40-211ENST00000464956 AMELXQ99217 191 aa0.96□□□□□ -2.26
USP40-211ENST00000464956 VCXQ9H320 206 aa0.96□□□□□ -2.26
USP40-211ENST00000464956 CRIPTQ9P021 101 aa0.96□□□□□ -2.26
USP40-211ENST00000464956 CDKN2A-AS1Q9UH64 79 aa0.96□□□□□ -2.26
USP40-211ENST00000464956 TNFSF18Q9UNG2 199 aa0.96□□□□□ -2.26
USP40-211ENST00000464956 IGLV4-3A0A075B6K6 122 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 TRBV10-3A0A0K0K1G6 114 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 A0A1B0GWB2 263 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 FAM74A7A6NL05 159 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 D6R8Y8 96 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 LST1O00453 97 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 SIX6O95475 246 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 MT1EP04732 61 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 PDE6GP18545 87 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 RPL35P42766 123 aaKnown RBP0.95□□□□□ -2.26
USP40-211ENST00000464956 TAL2Q16559 108 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 C5orf47Q569G3 176 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 PDZD11Q5EBL8 140 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 LINC00299Q6ZSB3 139 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 LITAFQ99732 161 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 CNFNQ9BYD5 112 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 S100A14Q9HCY8 104 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 ERG28Q9UKR5 140 aa0.95□□□□□ -2.26
USP40-211ENST00000464956 TRBV20OR9-2A0A075B6H5 130 aa0.94□□□□□ -2.26
USP40-211ENST00000464956 A0A087WSZ3 146 aa0.94□□□□□ -2.26
USP40-211ENST00000464956 SMIM1B2RUZ4 78 aa0.94□□□□□ -2.26
USP40-211ENST00000464956 HINT1P49773 126 aaPredicted RBP0.94□□□□□ -2.26
USP40-211ENST00000464956 DSCR10P59022 87 aa0.94□□□□□ -2.26
USP40-211ENST00000464956 GNGT1P63211 74 aa0.94□□□□□ -2.26
USP40-211ENST00000464956 CST9LP1Q5W188 147 aa0.94□□□□□ -2.26
USP40-211ENST00000464956 BOD1L2Q8IYS8 172 aa0.94□□□□□ -2.26
USP40-211ENST00000464956 ACTR3CQ9C0K3 210 aaPredicted RBP0.94□□□□□ -2.26
USP40-211ENST00000464956 VCX2Q9H322 139 aa0.94□□□□□ -2.26
USP40-211ENST00000464956 A0A087WXM4 84 aa0.93□□□□□ -2.26
USP40-211ENST00000464956 TEX49A0A1B0GTD5 131 aa0.93□□□□□ -2.26
USP40-211ENST00000464956 NDUFB6O95139 128 aa0.93□□□□□ -2.26
USP40-211ENST00000464956 MBP02144 154 aa0.93□□□□□ -2.26
USP40-211ENST00000464956 H2AFB2P0C5Z0 115 aa0.93□□□□□ -2.26
USP40-211ENST00000464956 DDTP30046 118 aa0.93□□□□□ -2.26
USP40-211ENST00000464956 LSM3P62310 102 aaKnown RBP0.93□□□□□ -2.26
USP40-211ENST00000464956 ADAMTSL4-AS1Q5T5F5 129 aa0.93□□□□□ -2.26
USP40-211ENST00000464956 Q5W150 140 aa0.93□□□□□ -2.26
USP40-211ENST00000464956 MT1MQ8N339 61 aa0.93□□□□□ -2.26
USP40-211ENST00000464956 DEFB105AQ8NG35 78 aa0.93□□□□□ -2.26
USP40-211ENST00000464956 DHRS4-AS1Q9P1J3 65 aa0.93□□□□□ -2.26
USP40-211ENST00000464956 SYNE1Q8NF91 8797 aaKnown RBP0.93□□□□□ -2.26
USP40-211ENST00000464956 BORCS7-ASMTA0A0B4J1R7 106 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 TRBV7-7A0A0K0K1E9 115 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 RGS5O15539 181 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 ATP6V1G1O75348 118 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 ATP6V1G2O95670 118 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 GIPP09681 153 aaPredicted RBP0.92□□□□□ -2.26
USP40-211ENST00000464956 LINC00158P58513 81 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 LINC00313P59037 77 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 PMVKQ15126 192 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 KRTAP19-7Q3SYF9 63 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 CSAG1Q6PB30 78 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 AMN1Q8IY45 258 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 TOMM5Q8N4H5 51 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 BORCS7Q96B45 105 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 C20orf78Q9BR46 151 aa0.92□□□□□ -2.26
USP40-211ENST00000464956 TRAV23DV6A0A075B6W5 121 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 LOC389332A0A1B0GUA5 103 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 SCO2A0A1W2PP80 73 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 CCDC160A6NGH7 325 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 ZNF815PA8K554 130 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 COLCA2A8K830 154 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 SMKR1H3BMG3 65 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 SPINK8P0C7L1 97 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 RAB4AP20338 218 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 Q5BKY6 102 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 PAPPA-AS1Q5QFB9 102 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 S100A7L2Q5SY68 101 aa0.91□□□□□ -2.26
USP40-211ENST00000464956 SFTA2Q6UW10 78 aa0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms