RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 IGKV2-28A0A075B6P5 120 aa9.38□□□□□ -0.91
COL7A1-204ENST00000462475 LINC01546A6NGU7 62 aa9.38□□□□□ -0.91
COL7A1-204ENST00000462475 SERF1AO75920 110 aa9.38□□□□□ -0.91
COL7A1-204ENST00000462475 IGKV2D-28P01615 120 aa9.38□□□□□ -0.91
COL7A1-204ENST00000462475 PMVKQ15126 192 aa9.38□□□□□ -0.91
COL7A1-204ENST00000462475 ATP5LO75964 103 aa9.37□□□□□ -0.91
COL7A1-204ENST00000462475 AKR1D1P51857 326 aa9.37□□□□□ -0.91
COL7A1-204ENST00000462475 LINC01549A6NIU2 74 aa9.36□□□□□ -0.91
COL7A1-204ENST00000462475 LINC00310P59036 64 aa9.36□□□□□ -0.91
COL7A1-204ENST00000462475 PRLHP81277 87 aa9.36□□□□□ -0.91
COL7A1-204ENST00000462475 FAM229BQ4G0N7 80 aa9.36□□□□□ -0.91
COL7A1-204ENST00000462475 LINC00304Q8N9R0 145 aa9.36□□□□□ -0.91
COL7A1-204ENST00000462475 HIST1H2BLQ99880 126 aa9.36□□□□□ -0.91
COL7A1-204ENST00000462475 FABP4P15090 132 aa9.35□□□□□ -0.91
COL7A1-204ENST00000462475 PFN2P35080 140 aa9.35□□□□□ -0.91
COL7A1-204ENST00000462475 CHCHD1Q96BP2 118 aaKnown RBP9.35□□□□□ -0.91
COL7A1-204ENST00000462475 IGLV5-39A0A0G2JS06 123 aa9.34□□□□□ -0.91
COL7A1-204ENST00000462475 H3BRM9 83 aa9.34□□□□□ -0.91
COL7A1-204ENST00000462475 TMEM238C9JI98 176 aa9.33□□□□□ -0.92
COL7A1-204ENST00000462475 HSBP1O75506 76 aa9.33□□□□□ -0.92
COL7A1-204ENST00000462475 LINC00614P0C842 121 aa9.33□□□□□ -0.92
COL7A1-204ENST00000462475 VPREB1P12018 145 aa9.33□□□□□ -0.92
COL7A1-204ENST00000462475 FA2HQ7L5A8 372 aa9.33□□□□□ -0.92
COL7A1-204ENST00000462475 KRTAP9-2Q9BYQ4 174 aa9.33□□□□□ -0.92
COL7A1-204ENST00000462475 IGLC3P0DOY3 106 aa9.32□□□□□ -0.92
COL7A1-204ENST00000462475 LCE2AQ5TA79 106 aaPredicted RBP9.32□□□□□ -0.92
COL7A1-204ENST00000462475 FAM19A1Q7Z5A9 133 aa9.32□□□□□ -0.92
COL7A1-204ENST00000462475 URB1-AS1Q96HZ7 61 aa9.32□□□□□ -0.92
COL7A1-204ENST00000462475 TMEM126AQ9H061 195 aa9.32□□□□□ -0.92
COL7A1-204ENST00000462475 SND1-IT1Q9HBX3 110 aa9.32□□□□□ -0.92
COL7A1-204ENST00000462475 IGKV2D-26A0A0A0MRZ7 120 aa9.31□□□□□ -0.92
COL7A1-204ENST00000462475 ZNF22P17026 224 aaPredicted RBP9.31□□□□□ -0.92
COL7A1-204ENST00000462475 Q8NDZ9 215 aa9.31□□□□□ -0.92
COL7A1-204ENST00000462475 ERG28Q9UKR5 140 aa9.31□□□□□ -0.92
COL7A1-204ENST00000462475 A0A096LNJ9 63 aa9.3□□□□□ -0.92
COL7A1-204ENST00000462475 M0R378 163 aa9.3□□□□□ -0.92
COL7A1-204ENST00000462475 TPRXLQ17RH7 258 aa9.29□□□□□ -0.92
COL7A1-204ENST00000462475 SMIM6P0DI80 62 aa9.28□□□□□ -0.92
COL7A1-204ENST00000462475 FAM19A2Q8N3H0 131 aa9.28□□□□□ -0.92
COL7A1-204ENST00000462475 ZNF625Q96I27 306 aaPredicted RBP9.28□□□□□ -0.92
COL7A1-204ENST00000462475 IGLV7-46A0A075B6I9 117 aa9.27□□□□□ -0.93
COL7A1-204ENST00000462475 RPL24P83731 157 aaKnown RBP9.27□□□□□ -0.93
COL7A1-204ENST00000462475 LINC00518Q8N0U6 118 aa9.27□□□□□ -0.93
COL7A1-204ENST00000462475 C3orf22Q8N5N4 141 aa9.27□□□□□ -0.93
COL7A1-204ENST00000462475 PLEKHB2Q96CS7 222 aa9.27□□□□□ -0.93
COL7A1-204ENST00000462475 CDIP1Q9H305 208 aa9.27□□□□□ -0.93
COL7A1-204ENST00000462475 COX17Q14061 63 aa9.25□□□□□ -0.93
COL7A1-204ENST00000462475 JOSD1Q15040 202 aaPredicted RBP9.25□□□□□ -0.93
COL7A1-204ENST00000462475 C11orf86A6NJI1 115 aa9.24□□□□□ -0.93
COL7A1-204ENST00000462475 PMCHL1Q16048 86 aa9.24□□□□□ -0.93
COL7A1-204ENST00000462475 PYY3Q5JQD4 70 aa9.24□□□□□ -0.93
COL7A1-204ENST00000462475 HIGD2AQ9BW72 106 aa9.24□□□□□ -0.93
COL7A1-204ENST00000462475 LEPROTL1O95214 131 aa9.23□□□□□ -0.93
COL7A1-204ENST00000462475 HBDP02042 147 aa9.23□□□□□ -0.93
COL7A1-204ENST00000462475 C12orf57Q99622 126 aa9.23□□□□□ -0.93
COL7A1-204ENST00000462475 HSPB8Q9UJY1 196 aa9.23□□□□□ -0.93
COL7A1-204ENST00000462475 CTAG1AP78358 180 aa9.22□□□□□ -0.93
COL7A1-204ENST00000462475 TMEM170BQ5T4T1 132 aa9.22□□□□□ -0.93
COL7A1-204ENST00000462475 KRTDAPP60985 99 aa9.21□□□□□ -0.94
COL7A1-204ENST00000462475 SPRR4Q96PI1 79 aa9.21□□□□□ -0.94
COL7A1-204ENST00000462475 PPDPFQ9H3Y8 114 aa9.21□□□□□ -0.94
COL7A1-204ENST00000462475 SCGB1D1O95968 90 aa9.2□□□□□ -0.94
COL7A1-204ENST00000462475 C3orf79P0CE67 100 aa9.2□□□□□ -0.94
COL7A1-204ENST00000462475 SFTA2Q6UW10 78 aa9.2□□□□□ -0.94
COL7A1-204ENST00000462475 LINC00158P58513 81 aa9.19□□□□□ -0.94
COL7A1-204ENST00000462475 MAP1LC3CQ9BXW4 147 aa9.19□□□□□ -0.94
COL7A1-204ENST00000462475 A0A0U1RRA0 63 aa9.18□□□□□ -0.94
COL7A1-204ENST00000462475 SYS1-DBNDD2H3BUS1 97 aa9.16□□□□□ -0.94
COL7A1-204ENST00000462475 SPAG11AQ6PDA7 123 aa9.16□□□□□ -0.94
COL7A1-204ENST00000462475 PET117Q6UWS5 81 aa9.16□□□□□ -0.94
COL7A1-204ENST00000462475 CHTOPQ9Y3Y2 248 aaKnown RBP9.16□□□□□ -0.94
COL7A1-204ENST00000462475 S100A12P80511 92 aa9.15□□□□□ -0.94
COL7A1-204ENST00000462475 TMEM223A0PJW6 202 aa9.14□□□□□ -0.95
COL7A1-204ENST00000462475 C20orf202A1L168 122 aa9.14□□□□□ -0.95
COL7A1-204ENST00000462475 SMIM13P0DJ93 91 aa9.14□□□□□ -0.95
COL7A1-204ENST00000462475 DAND5Q8N907 189 aa9.14□□□□□ -0.95
COL7A1-204ENST00000462475 Q8NBF4 154 aa9.14□□□□□ -0.95
COL7A1-204ENST00000462475 IFI27L1Q96BM0 104 aa9.14□□□□□ -0.95
COL7A1-204ENST00000462475 ZNF706Q9Y5V0 76 aaPredicted RBP9.14□□□□□ -0.95
COL7A1-204ENST00000462475 PRYO14603 147 aa9.13□□□□□ -0.95
COL7A1-204ENST00000462475 NCR3O14931 201 aa9.13□□□□□ -0.95
COL7A1-204ENST00000462475 FP248Q71RG6 208 aaPredicted RBP9.13□□□□□ -0.95
COL7A1-204ENST00000462475 SPRR1AP35321 89 aa9.12□□□□□ -0.95
COL7A1-204ENST00000462475 BOD1L2Q8IYS8 172 aa9.12□□□□□ -0.95
COL7A1-204ENST00000462475 KRTAP13-3Q3SY46 172 aa9.11□□□□□ -0.95
COL7A1-204ENST00000462475 C4orf48Q5BLP8 95 aa9.11□□□□□ -0.95
COL7A1-204ENST00000462475 LINC01545Q5VT33 79 aa9.11□□□□□ -0.95
COL7A1-204ENST00000462475 LINC00337Q8N6G1 96 aa9.11□□□□□ -0.95
COL7A1-204ENST00000462475 KRTAP4-16G5E9R7 235 aaPredicted RBP9.1□□□□□ -0.95
COL7A1-204ENST00000462475 MEIG1Q5JSS6 88 aa9.1□□□□□ -0.95
COL7A1-204ENST00000462475 MIR7-3HGQ8N6C7 128 aa9.1□□□□□ -0.95
COL7A1-204ENST00000462475 SMCR5Q8TEV8 140 aa9.1□□□□□ -0.95
COL7A1-204ENST00000462475 KCNQ1DNQ9H478 68 aa9.1□□□□□ -0.95
COL7A1-204ENST00000462475 TRAV12-1A0A0B4J245 112 aa9.09□□□□□ -0.95
COL7A1-204ENST00000462475 H0Y8G0 127 aa9.09□□□□□ -0.95
COL7A1-204ENST00000462475 TRBV10-3A0A0K0K1G6 114 aa9.08□□□□□ -0.96
COL7A1-204ENST00000462475 KRTAP9-6A0A140TA67 174 aa9.08□□□□□ -0.96
COL7A1-204ENST00000462475 ETDCA0A1B0GVM5 59 aa9.08□□□□□ -0.96
COL7A1-204ENST00000462475 VAMP8Q9BV40 100 aa9.08□□□□□ -0.96
COL7A1-204ENST00000462475 LINC00483Q53H64 154 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms