RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 TMEM126AQ9H061 195 aa11.15□□□□□ -0.62
VARS-220ENST00000461874 TMEM238C9JI98 176 aa11.14□□□□□ -0.63
VARS-220ENST00000461874 TSPAN13O95857 204 aa11.14□□□□□ -0.63
VARS-220ENST00000461874 LINC00158P58513 81 aa11.13□□□□□ -0.63
VARS-220ENST00000461874 PRLHP81277 87 aa11.13□□□□□ -0.63
VARS-220ENST00000461874 M0R378 163 aa11.12□□□□□ -0.63
VARS-220ENST00000461874 FAM229BQ4G0N7 80 aa11.12□□□□□ -0.63
VARS-220ENST00000461874 KRTAP13-2Q52LG2 175 aa11.12□□□□□ -0.63
VARS-220ENST00000461874 FAM19A1Q7Z5A9 133 aa11.12□□□□□ -0.63
VARS-220ENST00000461874 CBLN2Q8IUK8 224 aa11.12□□□□□ -0.63
VARS-220ENST00000461874 A0A0U1RRA0 63 aa11.1□□□□□ -0.63
VARS-220ENST00000461874 HSBP1O75506 76 aa11.1□□□□□ -0.63
VARS-220ENST00000461874 FAM19A2Q8N3H0 131 aa11.1□□□□□ -0.63
VARS-220ENST00000461874 SMIM13P0DJ93 91 aa11.08□□□□□ -0.64
VARS-220ENST00000461874 TRGC2P03986 189 aa11.07□□□□□ -0.64
VARS-220ENST00000461874 ATP6V1G1O75348 118 aa11.06□□□□□ -0.64
VARS-220ENST00000461874 PLEKHB2Q96CS7 222 aa11.06□□□□□ -0.64
VARS-220ENST00000461874 HERV-K104P63124 156 aa11.05□□□□□ -0.64
VARS-220ENST00000461874 MEIG1Q5JSS6 88 aa11.05□□□□□ -0.64
VARS-220ENST00000461874 IGKV2D-26A0A0A0MRZ7 120 aa11.04□□□□□ -0.64
VARS-220ENST00000461874 NDUFA12Q9UI09 145 aa11.04□□□□□ -0.64
VARS-220ENST00000461874 H0Y8G0 127 aa11.03□□□□□ -0.64
VARS-220ENST00000461874 LINC00310P59036 64 aa11.03□□□□□ -0.64
VARS-220ENST00000461874 BOD1L2Q8IYS8 172 aa11.03□□□□□ -0.64
VARS-220ENST00000461874 MIR7-3HGQ8N6C7 128 aa11.03□□□□□ -0.64
VARS-220ENST00000461874 LINC00304Q8N9R0 145 aa11.03□□□□□ -0.64
VARS-220ENST00000461874 LINC00587B1AMM8 73 aa11.02□□□□□ -0.65
VARS-220ENST00000461874 SERF1AO75920 110 aa11.02□□□□□ -0.65
VARS-220ENST00000461874 LEPROTL1O95214 131 aa11.02□□□□□ -0.65
VARS-220ENST00000461874 HIGD2AQ9BW72 106 aa11.02□□□□□ -0.65
VARS-220ENST00000461874 MYMXA0A1B0GTQ4 84 aa11.01□□□□□ -0.65
VARS-220ENST00000461874 PRYO14603 147 aa10.99□□□□□ -0.65
VARS-220ENST00000461874 NCR3O14931 201 aa10.99□□□□□ -0.65
VARS-220ENST00000461874 TSPEAR-AS2P59090 65 aa10.99□□□□□ -0.65
VARS-220ENST00000461874 MAP1LC3CQ9BXW4 147 aa10.99□□□□□ -0.65
VARS-220ENST00000461874 LEPROTO15243 131 aa10.98□□□□□ -0.65
VARS-220ENST00000461874 PLNP26678 52 aa10.98□□□□□ -0.65
VARS-220ENST00000461874 KCNQ1DNQ9H478 68 aa10.98□□□□□ -0.65
VARS-220ENST00000461874 SPRR1AP35321 89 aa10.97□□□□□ -0.65
VARS-220ENST00000461874 C3orf22Q8N5N4 141 aa10.97□□□□□ -0.65
VARS-220ENST00000461874 SPRR4Q96PI1 79 aa10.97□□□□□ -0.65
VARS-220ENST00000461874 HSPB8Q9UJY1 196 aa10.97□□□□□ -0.65
VARS-220ENST00000461874 CTAG1AP78358 180 aa10.96□□□□□ -0.65
VARS-220ENST00000461874 SLC7A5P1Q8MH63 180 aa10.96□□□□□ -0.65
VARS-220ENST00000461874 LINC00337Q8N6G1 96 aa10.96□□□□□ -0.65
VARS-220ENST00000461874 COLCA2A8K830 154 aa10.95□□□□□ -0.66
VARS-220ENST00000461874 FABP4P15090 132 aa10.95□□□□□ -0.66
VARS-220ENST00000461874 RETNLBQ9BQ08 111 aa10.95□□□□□ -0.66
VARS-220ENST00000461874 MUC2Q02817 5179 aa10.95□□□□□ -0.66
VARS-220ENST00000461874 LOC107984156A0A0G2JMH3 177 aa10.94□□□□□ -0.66
VARS-220ENST00000461874 TRBV10-3A0A0K0K1G6 114 aa10.94□□□□□ -0.66
VARS-220ENST00000461874 KRTAP4-16G5E9R7 235 aaPredicted RBP10.94□□□□□ -0.66
VARS-220ENST00000461874 DPM2O94777 84 aa10.94□□□□□ -0.66
VARS-220ENST00000461874 ARL17AQ8IVW1 177 aa10.94□□□□□ -0.66
VARS-220ENST00000461874 PMCHL2Q9BQD1 86 aa10.94□□□□□ -0.66
VARS-220ENST00000461874 ZNF706Q9Y5V0 76 aaPredicted RBP10.94□□□□□ -0.66
VARS-220ENST00000461874 J3QQQ9 107 aa10.93□□□□□ -0.66
VARS-220ENST00000461874 DAND5Q8N907 189 aa10.93□□□□□ -0.66
VARS-220ENST00000461874 ETDCA0A1B0GVM5 59 aa10.92□□□□□ -0.66
VARS-220ENST00000461874 HERVK_113P61574 105 aa10.92□□□□□ -0.66
VARS-220ENST00000461874 IGKCP01834 107 aa10.91□□□□□ -0.66
VARS-220ENST00000461874 NMUP48645 174 aa10.91□□□□□ -0.66
VARS-220ENST00000461874 SMCR5Q8TEV8 140 aa10.91□□□□□ -0.66
VARS-220ENST00000461874 TRBV10-2A0A0K0K1G8 114 aa10.89□□□□□ -0.67
VARS-220ENST00000461874 LGALS3P17931 250 aaKnown RBP10.89□□□□□ -0.67
VARS-220ENST00000461874 S100A12P80511 92 aa10.89□□□□□ -0.67
VARS-220ENST00000461874 SPAG11AQ6PDA7 123 aa10.89□□□□□ -0.67
VARS-220ENST00000461874 IGLV7-46A0A075B6I9 117 aa10.87□□□□□ -0.67
VARS-220ENST00000461874 DDTP30046 118 aa10.87□□□□□ -0.67
VARS-220ENST00000461874 B5MCH6 92 aa10.86□□□□□ -0.67
VARS-220ENST00000461874 PPDPFQ9H3Y8 114 aa10.86□□□□□ -0.67
VARS-220ENST00000461874 SPANXB1Q9NS25 103 aaPredicted RBP10.86□□□□□ -0.67
VARS-220ENST00000461874 TPRXLQ17RH7 258 aa10.85□□□□□ -0.67
VARS-220ENST00000461874 LINC00483Q53H64 154 aa10.85□□□□□ -0.67
VARS-220ENST00000461874 MIEN1Q9BRT3 115 aa10.85□□□□□ -0.67
VARS-220ENST00000461874 NDUFC2O95298 119 aa10.84□□□□□ -0.67
VARS-220ENST00000461874 E9PLD3 99 aa10.83□□□□□ -0.68
VARS-220ENST00000461874 C4orf48Q5BLP8 95 aa10.83□□□□□ -0.68
VARS-220ENST00000461874 Q8NBF4 154 aa10.83□□□□□ -0.68
VARS-220ENST00000461874 A0A0J9YXY3 114 aa10.82□□□□□ -0.68
VARS-220ENST00000461874 ERC2-IT1O76042 136 aa10.82□□□□□ -0.68
VARS-220ENST00000461874 IGLV6-57P01721 117 aa10.82□□□□□ -0.68
VARS-220ENST00000461874 GAGE2AQ6NT46 116 aa10.82□□□□□ -0.68
VARS-220ENST00000461874 CDIP1Q9H305 208 aa10.82□□□□□ -0.68
VARS-220ENST00000461874 ADAMTSL4-AS1Q5T5F5 129 aa10.81□□□□□ -0.68
VARS-220ENST00000461874 SOSTDC1Q6X4U4 206 aa10.81□□□□□ -0.68
VARS-220ENST00000461874 Q9BRP9 147 aa10.81□□□□□ -0.68
VARS-220ENST00000461874 SYS1-DBNDD2H3BUS1 97 aa10.8□□□□□ -0.68
VARS-220ENST00000461874 EIF4EBP3O60516 100 aaPredicted RBP10.8□□□□□ -0.68
VARS-220ENST00000461874 HIST1H2BKO60814 126 aa10.8□□□□□ -0.68
VARS-220ENST00000461874 HIST1H2BJP06899 126 aa10.8□□□□□ -0.68
VARS-220ENST00000461874 HIST1H2BOP23527 126 aa10.8□□□□□ -0.68
VARS-220ENST00000461874 HIST1H2BBP33778 126 aa10.8□□□□□ -0.68
VARS-220ENST00000461874 HIST1H2BDP58876 126 aa10.8□□□□□ -0.68
VARS-220ENST00000461874 HIST1H2BCP62807 126 aa10.8□□□□□ -0.68
VARS-220ENST00000461874 HIST2H2BEQ16778 126 aa10.8□□□□□ -0.68
VARS-220ENST00000461874 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.8□□□□□ -0.68
VARS-220ENST00000461874 S100A7L2Q5SY68 101 aa10.8□□□□□ -0.68
VARS-220ENST00000461874 Q6ZRX8 168 aa10.8□□□□□ -0.68
VARS-220ENST00000461874 HIST1H2BHQ93079 126 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms