RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.53□□□□□ -1.84
VPS41-209ENST00000457055 IGKV3D-7A0A0C4DH55 119 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 TRBV7-4A0A0J9YYF1 115 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 CXorf51AA0A1B0GTR3 108 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 C11orf86A6NJI1 115 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 PMS2P5A8MQ11 134 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 C17orf98A8MV24 154 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 IGHV3-33P01772 117 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 FXYD6P3P58550 94 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 LYZP61626 148 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 KRTAP5-4Q6L8H1 288 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 C15orf56Q8N910 161 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 UBALD1Q8TB05 177 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 KRTAP4-4Q9BYR3 166 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 FAM215AQ9Y5M1 114 aa3.53□□□□□ -1.84
VPS41-209ENST00000457055 IGLV10-54A0A075B6I4 117 aa3.52□□□□□ -1.85
VPS41-209ENST00000457055 A0A087WVE0 104 aa3.52□□□□□ -1.85
VPS41-209ENST00000457055 TRAV10A0A0B4J240 114 aa3.52□□□□□ -1.85
VPS41-209ENST00000457055 HMGN4O00479 90 aa3.52□□□□□ -1.85
VPS41-209ENST00000457055 WISP3O95389 354 aaPredicted RBP3.52□□□□□ -1.85
VPS41-209ENST00000457055 IGKV3-11P04433 115 aa3.52□□□□□ -1.85
VPS41-209ENST00000457055 BAALC-AS2P0C853 105 aa3.52□□□□□ -1.85
VPS41-209ENST00000457055 PLNP26678 52 aa3.52□□□□□ -1.85
VPS41-209ENST00000457055 LINC01547P58512 204 aaPredicted RBP3.52□□□□□ -1.85
VPS41-209ENST00000457055 Q1RN00 199 aa3.52□□□□□ -1.85
VPS41-209ENST00000457055 LINC01560Q8TB33 94 aa3.52□□□□□ -1.85
VPS41-209ENST00000457055 WFDC6Q9BQY6 131 aa3.52□□□□□ -1.85
VPS41-209ENST00000457055 NDUFA4L2Q9NRX3 87 aa3.52□□□□□ -1.85
VPS41-209ENST00000457055 ZNRD1Q9P1U0 126 aa3.52□□□□□ -1.85
VPS41-209ENST00000457055 SONP18583 2426 aaKnown RBP3.52□□□□□ -1.85
VPS41-209ENST00000457055 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.52□□□□□ -1.85
VPS41-209ENST00000457055 IGKV1D-37A0A075B6S9 117 aa3.51□□□□□ -1.85
VPS41-209ENST00000457055 A8MU10 97 aa3.51□□□□□ -1.85
VPS41-209ENST00000457055 ELOF1P60002 83 aaKnown RBP3.51□□□□□ -1.85
VPS41-209ENST00000457055 PRR15LQ9BU68 103 aa3.51□□□□□ -1.85
VPS41-209ENST00000457055 ZANQ9Y493 2812 aa3.51□□□□□ -1.85
VPS41-209ENST00000457055 IGLV7-46A0A075B6I9 117 aa3.5□□□□□ -1.85
VPS41-209ENST00000457055 IGKV1OR2-108A0A075B7D4 117 aa3.5□□□□□ -1.85
VPS41-209ENST00000457055 IGHV1-18A0A0C4DH31 117 aa3.5□□□□□ -1.85
VPS41-209ENST00000457055 FAM74A4Q5TZK3 123 aa3.5□□□□□ -1.85
VPS41-209ENST00000457055 C20orf166-AS1Q96NR2 134 aa3.5□□□□□ -1.85
VPS41-209ENST00000457055 TMEM14AQ9Y6G1 99 aa3.5□□□□□ -1.85
VPS41-209ENST00000457055 KIF25-AS1Q9Y6Z4 181 aa3.5□□□□□ -1.85
VPS41-209ENST00000457055 IGHV3OR16-8A0A075B7F1 116 aa3.49□□□□□ -1.85
VPS41-209ENST00000457055 SPTY2D1-AS1A0A0U1RR47 76 aa3.49□□□□□ -1.85
VPS41-209ENST00000457055 A8MUU9 505 aa3.49□□□□□ -1.85
VPS41-209ENST00000457055 HIGD1CA8MV81 97 aa3.49□□□□□ -1.85
VPS41-209ENST00000457055 K7EMI3 77 aa3.49□□□□□ -1.85
VPS41-209ENST00000457055 C14orf178Q8N769 122 aaPredicted RBP3.49□□□□□ -1.85
VPS41-209ENST00000457055 TMEM263Q8WUH6 116 aaKnown RBP3.49□□□□□ -1.85
VPS41-209ENST00000457055 ORMDL1Q9P0S3 153 aa3.49□□□□□ -1.85
VPS41-209ENST00000457055 LENEPQ9Y5L5 61 aa3.49□□□□□ -1.85
VPS41-209ENST00000457055 RYR3Q15413 4870 aa3.49□□□□□ -1.85
VPS41-209ENST00000457055 HRNRQ86YZ3 2850 aaPredicted RBP3.48□□□□□ -1.85
VPS41-209ENST00000457055 TRBV10-1A0A0K0K1A3 114 aa3.48□□□□□ -1.85
VPS41-209ENST00000457055 PATE4P0C8F1 98 aa3.48□□□□□ -1.85
VPS41-209ENST00000457055 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.48□□□□□ -1.85
VPS41-209ENST00000457055 FDCSPQ8NFU4 85 aa3.48□□□□□ -1.85
VPS41-209ENST00000457055 Q8TAT8 98 aa3.48□□□□□ -1.85
VPS41-209ENST00000457055 MEGF8Q7Z7M0 2845 aa3.48□□□□□ -1.85
VPS41-209ENST00000457055 HEATR5BQ9P2D3 2071 aa3.48□□□□□ -1.85
VPS41-209ENST00000457055 HIVEP2P31629 2446 aa3.48□□□□□ -1.85
VPS41-209ENST00000457055 MGAM2Q2M2H8 2515 aa3.47□□□□□ -1.85
VPS41-209ENST00000457055 J3QRE1 110 aa3.47□□□□□ -1.85
VPS41-209ENST00000457055 RTL8CO15255 209 aa3.47□□□□□ -1.85
VPS41-209ENST00000457055 SPINK4O60575 86 aa3.47□□□□□ -1.85
VPS41-209ENST00000457055 KRTAP5-9P26371 169 aa3.47□□□□□ -1.85
VPS41-209ENST00000457055 C16orf74Q96GX8 76 aa3.47□□□□□ -1.85
VPS41-209ENST00000457055 SVEP1Q4LDE5 3571 aa3.47□□□□□ -1.85
VPS41-209ENST00000457055 A0A0J9YY99 117 aa3.46□□□□□ -1.86
VPS41-209ENST00000457055 TRBV6-5A0A0K0K1A5 114 aa3.46□□□□□ -1.86
VPS41-209ENST00000457055 A0A1B0GUT8 65 aa3.46□□□□□ -1.86
VPS41-209ENST00000457055 PPP1R17O96001 155 aa3.46□□□□□ -1.86
VPS41-209ENST00000457055 IGHV3-30P01768 117 aa3.46□□□□□ -1.86
VPS41-209ENST00000457055 IGHV3-30-5P0DP03 117 aa3.46□□□□□ -1.86
VPS41-209ENST00000457055 DEFB113Q30KQ7 82 aa3.46□□□□□ -1.86
VPS41-209ENST00000457055 CSAG1Q6PB30 78 aa3.46□□□□□ -1.86
VPS41-209ENST00000457055 GFRA4Q9GZZ7 299 aa3.46□□□□□ -1.86
VPS41-209ENST00000457055 IGKV3D-11A0A0A0MRZ8 115 aa3.45□□□□□ -1.86
VPS41-209ENST00000457055 H3BQ85 93 aa3.45□□□□□ -1.86
VPS41-209ENST00000457055 NDUFB1O75438 58 aa3.45□□□□□ -1.86
VPS41-209ENST00000457055 SPAG11BQ08648 103 aa3.45□□□□□ -1.86
VPS41-209ENST00000457055 NREPQ16612 68 aa3.45□□□□□ -1.86
VPS41-209ENST00000457055 SPAG11AQ6PDA7 123 aa3.45□□□□□ -1.86
VPS41-209ENST00000457055 KLHL30-AS1Q8NEE0 82 aa3.45□□□□□ -1.86
VPS41-209ENST00000457055 Q9BRP9 147 aa3.45□□□□□ -1.86
VPS41-209ENST00000457055 DEFB126Q9BYW3 111 aa3.45□□□□□ -1.86
VPS41-209ENST00000457055 UBL5Q9BZL1 73 aa3.45□□□□□ -1.86
VPS41-209ENST00000457055 TIMM8BQ9Y5J9 83 aaPredicted RBP3.45□□□□□ -1.86
VPS41-209ENST00000457055 KMT2CQ8NEZ4 4911 aaKnown RBP3.45□□□□□ -1.86
VPS41-209ENST00000457055 ANK2Q01484 3957 aa3.44□□□□□ -1.86
VPS41-209ENST00000457055 USF3Q68DE3 2245 aa3.44□□□□□ -1.86
VPS41-209ENST00000457055 IGHV3-64DA0A0J9YX35 117 aa3.44□□□□□ -1.86
VPS41-209ENST00000457055 ODF3BA8MYP8 253 aa3.44□□□□□ -1.86
VPS41-209ENST00000457055 IGHV3-53P01767 116 aa3.44□□□□□ -1.86
VPS41-209ENST00000457055 LINC00483Q53H64 154 aa3.44□□□□□ -1.86
VPS41-209ENST00000457055 Q86TA4 180 aa3.44□□□□□ -1.86
VPS41-209ENST00000457055 PATE1Q8WXA2 126 aa3.44□□□□□ -1.86
VPS41-209ENST00000457055 CR1P17927 2039 aa3.43□□□□□ -1.86
VPS41-209ENST00000457055 IGHV3-64A0A075B6Q5 118 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms