RNA–Protein interactions for RNA: ENST00000451893.5

C9orf3-208, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 514 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-208ENST00000451893 Q6ZVH6 145 aa13.78□□□□□ -0.2
C9orf3-208ENST00000451893 SPACA4Q8TDM5 124 aa13.78□□□□□ -0.2
C9orf3-208ENST00000451893 GVQW2A0A096LPI5 108 aaPredicted RBP13.77□□□□□ -0.21
C9orf3-208ENST00000451893 ORAOV1Q8WV07 137 aa13.77□□□□□ -0.21
C9orf3-208ENST00000451893 TOMM7Q9P0U1 55 aa13.77□□□□□ -0.21
C9orf3-208ENST00000451893 ZNF561-AS1K7EIQ3 104 aa13.76□□□□□ -0.21
C9orf3-208ENST00000451893 SRSF9Q13242 221 aaKnown RBP eCLIP13.76□□□□□ -0.21
C9orf3-208ENST00000451893 HIST1H4GQ99525 98 aa13.76□□□□□ -0.21
C9orf3-208ENST00000451893 SERTAD4-AS1Q5TG53 156 aa13.75□□□□□ -0.21
C9orf3-208ENST00000451893 F8WDY8 70 aa13.74□□□□□ -0.21
C9orf3-208ENST00000451893 KIAA0087Q14695 138 aa13.74□□□□□ -0.21
C9orf3-208ENST00000451893 BVES-AS1Q5T3Y7 98 aa13.74□□□□□ -0.21
C9orf3-208ENST00000451893 SNHG12Q9BXW3 62 aa13.74□□□□□ -0.21
C9orf3-208ENST00000451893 HINT1P49773 126 aaPredicted RBP13.73□□□□□ -0.21
C9orf3-208ENST00000451893 CKS1BP61024 79 aa13.73□□□□□ -0.21
C9orf3-208ENST00000451893 CEND1Q8N111 149 aa13.73□□□□□ -0.21
C9orf3-208ENST00000451893 CARD19Q96LW7 228 aa13.73□□□□□ -0.21
C9orf3-208ENST00000451893 COPS9Q8WXC6 57 aa13.72□□□□□ -0.21
C9orf3-208ENST00000451893 SPANXDQ9BXN6 97 aa13.72□□□□□ -0.21
C9orf3-208ENST00000451893 SPANXCQ9NY87 97 aa13.72□□□□□ -0.21
C9orf3-208ENST00000451893 PLAC8Q9NZF1 115 aa13.71□□□□□ -0.21
C9orf3-208ENST00000451893 LINC00474Q9P2X8 69 aa13.71□□□□□ -0.21
C9orf3-208ENST00000451893 IFITM1P13164 125 aa13.7□□□□□ -0.22
C9orf3-208ENST00000451893 SPAG11BQ08648 103 aa13.7□□□□□ -0.22
C9orf3-208ENST00000451893 LINC00526Q96FQ7 95 aa13.7□□□□□ -0.22
C9orf3-208ENST00000451893 LITAFQ99732 161 aa13.69□□□□□ -0.22
C9orf3-208ENST00000451893 PPDPFQ9H3Y8 114 aa13.69□□□□□ -0.22
C9orf3-208ENST00000451893 TMEM238LA0A1B0GVL6 79 aa13.68□□□□□ -0.22
C9orf3-208ENST00000451893 A6NDN8 102 aa13.68□□□□□ -0.22
C9orf3-208ENST00000451893 A6NJY4 79 aa13.68□□□□□ -0.22
C9orf3-208ENST00000451893 PTTG1IPP53801 180 aa13.68□□□□□ -0.22
C9orf3-208ENST00000451893 SYCNQ0VAF6 134 aa13.68□□□□□ -0.22
C9orf3-208ENST00000451893 MEIG1Q5JSS6 88 aa13.68□□□□□ -0.22
C9orf3-208ENST00000451893 COL5A1-AS1Q5SY13 56 aa13.68□□□□□ -0.22
C9orf3-208ENST00000451893 Q6ZRU5 148 aa13.68□□□□□ -0.22
C9orf3-208ENST00000451893 C2orf48Q96LS8 159 aa13.68□□□□□ -0.22
C9orf3-208ENST00000451893 A0A096LNI7 61 aa13.67□□□□□ -0.22
C9orf3-208ENST00000451893 COX17Q14061 63 aa13.67□□□□□ -0.22
C9orf3-208ENST00000451893 BATFQ16520 125 aa13.67□□□□□ -0.22
C9orf3-208ENST00000451893 RPL24P83731 157 aaKnown RBP13.65□□□□□ -0.22
C9orf3-208ENST00000451893 CAMK2N2Q96S95 79 aa13.64□□□□□ -0.23
C9orf3-208ENST00000451893 ADAMTSL4-AS1Q5T5F5 129 aa13.63□□□□□ -0.23
C9orf3-208ENST00000451893 ERG28Q9UKR5 140 aa13.63□□□□□ -0.23
C9orf3-208ENST00000451893 PLA2G2DQ9UNK4 145 aa13.63□□□□□ -0.23
C9orf3-208ENST00000451893 SMIM13P0DJ93 91 aa13.62□□□□□ -0.23
C9orf3-208ENST00000451893 TRBV30A0A0K0K1B3 111 aa13.61□□□□□ -0.23
C9orf3-208ENST00000451893 LOC107984640A0A0U1RRK4 108 aa13.61□□□□□ -0.23
C9orf3-208ENST00000451893 FXYD2P54710 66 aa13.61□□□□□ -0.23
C9orf3-208ENST00000451893 LINC00158P58513 81 aa13.61□□□□□ -0.23
C9orf3-208ENST00000451893 GAGE2BQ13066 116 aa13.61□□□□□ -0.23
C9orf3-208ENST00000451893 C2orf82Q6UX34 121 aa13.61□□□□□ -0.23
C9orf3-208ENST00000451893 MUSTN1Q8IVN3 82 aa13.61□□□□□ -0.23
C9orf3-208ENST00000451893 LRP1Q07954 4544 aaKnown RBP13.59□□□□□ -0.23
C9orf3-208ENST00000451893 A0A1B0GWB2 263 aa13.58□□□□□ -0.24
C9orf3-208ENST00000451893 PRR3P79522 188 aaKnown RBP13.58□□□□□ -0.24
C9orf3-208ENST00000451893 UNQ6190/PRO20217Q6UXQ8 127 aa13.58□□□□□ -0.24
C9orf3-208ENST00000451893 LINC00308Q8TCZ7 52 aa13.58□□□□□ -0.24
C9orf3-208ENST00000451893 PKHD1L1Q86WI1 4243 aa13.57□□□□□ -0.24
C9orf3-208ENST00000451893 RPL18AQ02543 176 aaKnown RBP13.57□□□□□ -0.24
C9orf3-208ENST00000451893 RNF151Q2KHN1 245 aa13.56□□□□□ -0.24
C9orf3-208ENST00000451893 PFN2P35080 140 aa13.55□□□□□ -0.24
C9orf3-208ENST00000451893 MIR7-3HGQ8N6C7 128 aa13.55□□□□□ -0.24
C9orf3-208ENST00000451893 NHP2Q9NX24 153 aaKnown RBP13.55□□□□□ -0.24
C9orf3-208ENST00000451893 FAT3Q8TDW7 4589 aa13.55□□□□□ -0.24
C9orf3-208ENST00000451893 LOC107984156A0A0G2JMH3 177 aa13.54□□□□□ -0.24
C9orf3-208ENST00000451893 A0A0U1RRA0 63 aa13.54□□□□□ -0.24
C9orf3-208ENST00000451893 A4D1N5 150 aa13.54□□□□□ -0.24
C9orf3-208ENST00000451893 ARL17AQ8IVW1 177 aa13.54□□□□□ -0.24
C9orf3-208ENST00000451893 C10orf25Q5T742 122 aa13.53□□□□□ -0.24
C9orf3-208ENST00000451893 Q6ZRP5 223 aa13.52□□□□□ -0.25
C9orf3-208ENST00000451893 DAND5Q8N907 189 aa13.52□□□□□ -0.25
C9orf3-208ENST00000451893 C6orf48Q9UBA6 75 aa13.52□□□□□ -0.25
C9orf3-208ENST00000451893 A0A0B4J2C4 111 aa13.51□□□□□ -0.25
C9orf3-208ENST00000451893 CFC1BP0CG36 223 aa13.5□□□□□ -0.25
C9orf3-208ENST00000451893 CFC1P0CG37 223 aa13.5□□□□□ -0.25
C9orf3-208ENST00000451893 REG3GQ6UW15 175 aa13.5□□□□□ -0.25
C9orf3-208ENST00000451893 TAX1BP3O14907 124 aa13.49□□□□□ -0.25
C9orf3-208ENST00000451893 SPINK6Q6UWN8 80 aa13.48□□□□□ -0.25
C9orf3-208ENST00000451893 SOSTDC1Q6X4U4 206 aa13.48□□□□□ -0.25
C9orf3-208ENST00000451893 RAB37Q96AX2 223 aa13.48□□□□□ -0.25
C9orf3-208ENST00000451893 PRO1854Q9UHT4 67 aa13.48□□□□□ -0.25
C9orf3-208ENST00000451893 NPC2P61916 151 aa13.47□□□□□ -0.25
C9orf3-208ENST00000451893 C9orf116Q5BN46 136 aaPredicted RBP13.47□□□□□ -0.25
C9orf3-208ENST00000451893 TLX1NBP0CAT3 122 aa13.46□□□□□ -0.25
C9orf3-208ENST00000451893 MT1HL1P0DM35 61 aa13.46□□□□□ -0.25
C9orf3-208ENST00000451893 SND1-IT1Q9HBX3 110 aa13.46□□□□□ -0.25
C9orf3-208ENST00000451893 C9orf118A6NHY6 69 aa13.45□□□□□ -0.26
C9orf3-208ENST00000451893 NDUFC2-KCTD14E9PQ53 114 aa13.45□□□□□ -0.26
C9orf3-208ENST00000451893 NDUFC2O95298 119 aa13.45□□□□□ -0.26
C9orf3-208ENST00000451893 A0A1W2PNN7 141 aa13.43□□□□□ -0.26
C9orf3-208ENST00000451893 EIF4EBP3O60516 100 aaPredicted RBP13.43□□□□□ -0.26
C9orf3-208ENST00000451893 TRAV13-2A0A0B4J235 113 aa13.42□□□□□ -0.26
C9orf3-208ENST00000451893 K7ERJ3 54 aa13.42□□□□□ -0.26
C9orf3-208ENST00000451893 LINC01600Q96MT4 127 aa13.42□□□□□ -0.26
C9orf3-208ENST00000451893 GAGE2EQ4V326 116 aa13.39□□□□□ -0.27
C9orf3-208ENST00000451893 PHF5AQ7RTV0 110 aaKnown RBP13.39□□□□□ -0.27
C9orf3-208ENST00000451893 GAGE2DQ9UEU5 116 aa13.39□□□□□ -0.27
C9orf3-208ENST00000451893 C1orf137Q5JT78 98 aa13.38□□□□□ -0.27
C9orf3-208ENST00000451893 H3BUT2 72 aa13.36□□□□□ -0.27
C9orf3-208ENST00000451893 FAM19A5Q7Z5A7 132 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms