RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 IGHV3OR16-9A0A0B4J2B5 98 aa10.6□□□□□ -0.71
PTPRF-206ENST00000429895 IGLV5-39A0A0G2JS06 123 aa10.59□□□□□ -0.71
PTPRF-206ENST00000429895 ACYP2P14621 99 aa10.57□□□□□ -0.72
PTPRF-206ENST00000429895 EPM2AB3EWF7 344 aa10.57□□□□□ -0.72
PTPRF-206ENST00000429895 LINC00313P59037 77 aa10.57□□□□□ -0.72
PTPRF-206ENST00000429895 IGLV8-61A0A075B6I0 122 aa10.56□□□□□ -0.72
PTPRF-206ENST00000429895 NBDYA0A0U1RRE5 68 aa10.56□□□□□ -0.72
PTPRF-206ENST00000429895 RPL37AP61513 92 aaKnown RBP10.55□□□□□ -0.72
PTPRF-206ENST00000429895 ST20-AS1Q8NBB2 130 aa10.55□□□□□ -0.72
PTPRF-206ENST00000429895 LINC00476Q8WZB0 136 aa10.55□□□□□ -0.72
PTPRF-206ENST00000429895 SPAG11AQ6PDA7 123 aa10.55□□□□□ -0.72
PTPRF-206ENST00000429895 J3QL48 77 aa10.54□□□□□ -0.72
PTPRF-206ENST00000429895 Q6ZRP5 223 aa10.54□□□□□ -0.72
PTPRF-206ENST00000429895 Q96NJ1 140 aa10.54□□□□□ -0.72
PTPRF-206ENST00000429895 TP53AIP1Q9HCN2 124 aa10.54□□□□□ -0.72
PTPRF-206ENST00000429895 Q8NBF4 154 aa10.53□□□□□ -0.72
PTPRF-206ENST00000429895 ELOF1P60002 83 aaKnown RBP10.53□□□□□ -0.72
PTPRF-206ENST00000429895 LINC00588Q9Y4M8 146 aa10.53□□□□□ -0.72
PTPRF-206ENST00000429895 FAM218AQ96MZ4 157 aa10.52□□□□□ -0.72
PTPRF-206ENST00000429895 FAM19A4Q96LR4 140 aa10.51□□□□□ -0.73
PTPRF-206ENST00000429895 Q6ZRX8 168 aa10.5□□□□□ -0.73
PTPRF-206ENST00000429895 H3BNG1 76 aa10.48□□□□□ -0.73
PTPRF-206ENST00000429895 ATP11AUNQ6ZP68 121 aa10.48□□□□□ -0.73
PTPRF-206ENST00000429895 CDIP1Q9H305 208 aa10.47□□□□□ -0.73
PTPRF-206ENST00000429895 LINC01546A6NGU7 62 aa10.46□□□□□ -0.73
PTPRF-206ENST00000429895 JMJD1CQ15652 2540 aa10.46□□□□□ -0.73
PTPRF-206ENST00000429895 FAM168BA1KXE4 195 aa10.46□□□□□ -0.74
PTPRF-206ENST00000429895 Q8NAQ8 132 aa10.45□□□□□ -0.74
PTPRF-206ENST00000429895 WWC2-AS2Q96NR7 200 aa10.44□□□□□ -0.74
PTPRF-206ENST00000429895 Q6ZQT0 140 aa10.44□□□□□ -0.74
PTPRF-206ENST00000429895 BCE1O60756 84 aa10.43□□□□□ -0.74
PTPRF-206ENST00000429895 COX6B2Q6YFQ2 88 aa10.43□□□□□ -0.74
PTPRF-206ENST00000429895 LRRK2Q5S007 2527 aa10.42□□□□□ -0.74
PTPRF-206ENST00000429895 IGLV5-45A0A087WSX0 123 aa10.41□□□□□ -0.74
PTPRF-206ENST00000429895 TRAV22A0A0B4J277 110 aa10.4□□□□□ -0.74
PTPRF-206ENST00000429895 MYO9AB2RTY4 2548 aa10.39□□□□□ -0.75
PTPRF-206ENST00000429895 GVQW2A0A096LPI5 108 aaPredicted RBP10.39□□□□□ -0.75
PTPRF-206ENST00000429895 SMCPP49901 116 aaPredicted RBP10.39□□□□□ -0.75
PTPRF-206ENST00000429895 PIEZO1Q92508 2521 aa10.38□□□□□ -0.75
PTPRF-206ENST00000429895 PTPRBP23467 1997 aa10.38□□□□□ -0.75
PTPRF-206ENST00000429895 SPINT4Q6UDR6 99 aa10.37□□□□□ -0.75
PTPRF-206ENST00000429895 DNAH10OSP0CZ25 163 aa10.37□□□□□ -0.75
PTPRF-206ENST00000429895 TM2D3Q9BRN9 247 aa10.37□□□□□ -0.75
PTPRF-206ENST00000429895 COL27A1Q8IZC6 1860 aaPredicted RBP10.36□□□□□ -0.75
PTPRF-206ENST00000429895 LOC110117498A0A087WWA1 95 aa10.35□□□□□ -0.75
PTPRF-206ENST00000429895 COL4A2P08572 1712 aa10.34□□□□□ -0.75
PTPRF-206ENST00000429895 C9orf92A6NGG3 77 aa10.34□□□□□ -0.75
PTPRF-206ENST00000429895 C4orf26Q17RF5 130 aa10.34□□□□□ -0.75
PTPRF-206ENST00000429895 SERTAD4-AS1Q5TG53 156 aa10.34□□□□□ -0.75
PTPRF-206ENST00000429895 ABCA12Q86UK0 2595 aa10.34□□□□□ -0.75
PTPRF-206ENST00000429895 A0A1B0GW54 56 aa10.32□□□□□ -0.76
PTPRF-206ENST00000429895 FN1P02751 2386 aaKnown RBP10.32□□□□□ -0.76
PTPRF-206ENST00000429895 DSCR10P59022 87 aa10.32□□□□□ -0.76
PTPRF-206ENST00000429895 ZFYVE26Q68DK2 2539 aa10.32□□□□□ -0.76
PTPRF-206ENST00000429895 H3BPC8 53 aa10.31□□□□□ -0.76
PTPRF-206ENST00000429895 TRBV7-4A0A0J9YYF1 115 aa10.31□□□□□ -0.76
PTPRF-206ENST00000429895 SMR3BP02814 79 aaPredicted RBP10.3□□□□□ -0.76
PTPRF-206ENST00000429895 K7EQZ3 153 aa10.3□□□□□ -0.76
PTPRF-206ENST00000429895 VPREB1P12018 145 aa10.29□□□□□ -0.76
PTPRF-206ENST00000429895 APLNQ9ULZ1 77 aa10.29□□□□□ -0.76
PTPRF-206ENST00000429895 A8MWP4 228 aa10.29□□□□□ -0.76
PTPRF-206ENST00000429895 KRTAP10-11P60412 298 aa10.29□□□□□ -0.76
PTPRF-206ENST00000429895 SSBP3-AS1Q7Z2R9 100 aa10.29□□□□□ -0.76
PTPRF-206ENST00000429895 MRPL34Q9BQ48 92 aaKnown RBP10.29□□□□□ -0.76
PTPRF-206ENST00000429895 C8orf87E5RJ46 101 aa10.28□□□□□ -0.76
PTPRF-206ENST00000429895 PRO0628Q9UI54 55 aa10.27□□□□□ -0.76
PTPRF-206ENST00000429895 LOC101927531A0A1B0GV80 90 aa10.27□□□□□ -0.76
PTPRF-206ENST00000429895 TLN1Q9Y490 2541 aaKnown RBP10.27□□□□□ -0.77
PTPRF-206ENST00000429895 LINC01600Q96MT4 127 aa10.26□□□□□ -0.77
PTPRF-206ENST00000429895 IGLV1-50A0A075B6I6 118 aa10.26□□□□□ -0.77
PTPRF-206ENST00000429895 OBSCN-AS1Q96MR7 158 aa10.26□□□□□ -0.77
PTPRF-206ENST00000429895 K7EIL1 84 aa10.25□□□□□ -0.77
PTPRF-206ENST00000429895 LINC00304Q8N9R0 145 aa10.25□□□□□ -0.77
PTPRF-206ENST00000429895 IGLV6-57P01721 117 aa10.25□□□□□ -0.77
PTPRF-206ENST00000429895 PRO0461Q9UI25 63 aa10.25□□□□□ -0.77
PTPRF-206ENST00000429895 UTRNP46939 3433 aa10.22□□□□□ -0.77
PTPRF-206ENST00000429895 COA5Q86WW8 74 aa10.21□□□□□ -0.77
PTPRF-206ENST00000429895 A0A0G2JQZ4 141 aa10.21□□□□□ -0.77
PTPRF-206ENST00000429895 A0A1W2PNN7 141 aa10.21□□□□□ -0.77
PTPRF-206ENST00000429895 TLN2Q9Y4G6 2542 aa10.21□□□□□ -0.77
PTPRF-206ENST00000429895 ANAPC11Q9NYG5 84 aa10.21□□□□□ -0.78
PTPRF-206ENST00000429895 IGFL1Q6UW32 110 aa10.2□□□□□ -0.78
PTPRF-206ENST00000429895 LITAFQ99732 161 aa10.19□□□□□ -0.78
PTPRF-206ENST00000429895 WDR87Q6ZQQ6 2873 aa10.17□□□□□ -0.78
PTPRF-206ENST00000429895 CSNK1G2-AS1Q8NCQ2 148 aa10.17□□□□□ -0.78
PTPRF-206ENST00000429895 KCNQ1DNQ9H478 68 aa10.16□□□□□ -0.78
PTPRF-206ENST00000429895 C8orf17Q9NRJ1 99 aa10.16□□□□□ -0.78
PTPRF-206ENST00000429895 ZNF861PO60384 105 aa10.15□□□□□ -0.78
PTPRF-206ENST00000429895 C15orf56Q8N910 161 aa10.15□□□□□ -0.78
PTPRF-206ENST00000429895 USP9XQ93008 2570 aaPredicted RBP10.15□□□□□ -0.79
PTPRF-206ENST00000429895 A0A087WTM6 91 aa10.14□□□□□ -0.79
PTPRF-206ENST00000429895 A8MUN3 132 aa10.14□□□□□ -0.79
PTPRF-206ENST00000429895 IGLV5-37A0A075B6J1 123 aa10.14□□□□□ -0.79
PTPRF-206ENST00000429895 KRTAP10-3P60369 221 aa10.13□□□□□ -0.79
PTPRF-206ENST00000429895 DNAH12Q6ZR08 3092 aa10.13□□□□□ -0.79
PTPRF-206ENST00000429895 LINC01554Q52M75 96 aa10.13□□□□□ -0.79
PTPRF-206ENST00000429895 C9orf129Q5T035 196 aaKnown RBP10.13□□□□□ -0.79
PTPRF-206ENST00000429895 LINC00528Q8N1L1 170 aa10.11□□□□□ -0.79
PTPRF-206ENST00000429895 CRIPTQ9P021 101 aa10.11□□□□□ -0.79
PTPRF-206ENST00000429895 A0A1B0GVX0 72 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms