RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 GCN1Q92616 2671 aaKnown RBP2.38□□□□□ -2.03
SYNE1-212ENST00000423061 K7EQG2 157 aa2.38□□□□□ -2.03
SYNE1-212ENST00000423061 LINC00575Q6W349 94 aa2.38□□□□□ -2.03
SYNE1-212ENST00000423061 CHCHD10Q8WYQ3 142 aaPredicted RBP2.38□□□□□ -2.03
SYNE1-212ENST00000423061 GOLGB1Q14789 3259 aaKnown RBP2.38□□□□□ -2.03
SYNE1-212ENST00000423061 Q5VV11 94 aa2.38□□□□□ -2.03
SYNE1-212ENST00000423061 SMIM29Q86T20 159 aa2.37□□□□□ -2.03
SYNE1-212ENST00000423061 FASNP49327 2511 aaKnown RBP2.37□□□□□ -2.03
SYNE1-212ENST00000423061 PCOTHQ58A44 107 aa2.37□□□□□ -2.03
SYNE1-212ENST00000423061 ST20-AS1Q8NBB2 130 aa2.37□□□□□ -2.03
SYNE1-212ENST00000423061 ERC2-IT1O76042 136 aa2.37□□□□□ -2.03
SYNE1-212ENST00000423061 MAPK1IP1LQ8NDC0 245 aa2.37□□□□□ -2.03
SYNE1-212ENST00000423061 IGHV4-61A0A0C4DH41 118 aa2.37□□□□□ -2.03
SYNE1-212ENST00000423061 ZFP36P26651 326 aaKnown RBP2.37□□□□□ -2.03
SYNE1-212ENST00000423061 DEFB135Q30KP9 77 aa2.37□□□□□ -2.03
SYNE1-212ENST00000423061 CENPFP49454 3210 aa2.37□□□□□ -2.03
SYNE1-212ENST00000423061 IGKV4-1P06312 121 aa2.37□□□□□ -2.03
SYNE1-212ENST00000423061 PRO0255Q9UI72 69 aa2.37□□□□□ -2.03
SYNE1-212ENST00000423061 A6NDX4 124 aa2.37□□□□□ -2.03
SYNE1-212ENST00000423061 SPART-AS1P0CW21 52 aa2.37□□□□□ -2.03
SYNE1-212ENST00000423061 LINC01554Q52M75 96 aa2.37□□□□□ -2.03
SYNE1-212ENST00000423061 IGLV4-60A0A075B6I1 120 aa2.36□□□□□ -2.03
SYNE1-212ENST00000423061 EP400Q96L91 3159 aa2.36□□□□□ -2.03
SYNE1-212ENST00000423061 FBXL19-AS1Q494R0 122 aa2.36□□□□□ -2.03
SYNE1-212ENST00000423061 DHRS4-AS1Q9P1J3 65 aa2.36□□□□□ -2.03
SYNE1-212ENST00000423061 H0Y9J4 135 aa2.36□□□□□ -2.03
SYNE1-212ENST00000423061 Q8IZM0 81 aa2.36□□□□□ -2.03
SYNE1-212ENST00000423061 COX17Q14061 63 aa2.36□□□□□ -2.03
SYNE1-212ENST00000423061 INAFM1C9JVW0 142 aa2.36□□□□□ -2.03
SYNE1-212ENST00000423061 C14orf177Q52M58 125 aa2.36□□□□□ -2.03
SYNE1-212ENST00000423061 C9orf66Q5T8R8 295 aa2.36□□□□□ -2.03
SYNE1-212ENST00000423061 C11orf71Q6IPW1 123 aa2.36□□□□□ -2.03
SYNE1-212ENST00000423061 Q8NA96 180 aa2.36□□□□□ -2.03
SYNE1-212ENST00000423061 OCR1Q9BZK8 76 aa2.36□□□□□ -2.03
SYNE1-212ENST00000423061 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.36□□□□□ -2.03
SYNE1-212ENST00000423061 A0A1W2PNU3 283 aaPredicted RBP2.35□□□□□ -2.03
SYNE1-212ENST00000423061 LOC101927531A0A1B0GV80 90 aa2.35□□□□□ -2.03
SYNE1-212ENST00000423061 SPINK7P58062 85 aa2.35□□□□□ -2.03
SYNE1-212ENST00000423061 COA5Q86WW8 74 aa2.35□□□□□ -2.03
SYNE1-212ENST00000423061 A6NN06 94 aa2.35□□□□□ -2.03
SYNE1-212ENST00000423061 TRBV7-4A0A0J9YYF1 115 aa2.35□□□□□ -2.03
SYNE1-212ENST00000423061 TNP2Q05952 138 aa2.35□□□□□ -2.03
SYNE1-212ENST00000423061 ADM2Q7Z4H4 148 aa2.35□□□□□ -2.03
SYNE1-212ENST00000423061 F8W735 103 aaPredicted RBP2.35□□□□□ -2.03
SYNE1-212ENST00000423061 CYP4F30PQ9H0H9 118 aa2.35□□□□□ -2.03
SYNE1-212ENST00000423061 C1orf134Q5TEV5 83 aa2.35□□□□□ -2.03
SYNE1-212ENST00000423061 A0A0A0MQY5 61 aa2.34□□□□□ -2.03
SYNE1-212ENST00000423061 CSAG1Q6PB30 78 aa2.34□□□□□ -2.03
SYNE1-212ENST00000423061 H0Y9P7 68 aa2.34□□□□□ -2.03
SYNE1-212ENST00000423061 CDC42SE2Q9NRR3 84 aa2.34□□□□□ -2.04
SYNE1-212ENST00000423061 Q8NAQ8 132 aa2.34□□□□□ -2.04
SYNE1-212ENST00000423061 LMO4P61968 165 aa2.34□□□□□ -2.04
SYNE1-212ENST00000423061 MAP1AP78559 2803 aaPredicted RBP2.34□□□□□ -2.04
SYNE1-212ENST00000423061 AKAP13Q12802 2813 aa2.33□□□□□ -2.04
SYNE1-212ENST00000423061 UNQ6190/PRO20217Q6UXQ8 127 aa2.33□□□□□ -2.04
SYNE1-212ENST00000423061 ATRQ13535 2644 aa2.33□□□□□ -2.04
SYNE1-212ENST00000423061 LINC00959A0A1B0GUT2 108 aa2.33□□□□□ -2.04
SYNE1-212ENST00000423061 LOC100131303A0A0U1RQF7 123 aa2.33□□□□□ -2.04
SYNE1-212ENST00000423061 LINC00476Q8WZB0 136 aa2.33□□□□□ -2.04
SYNE1-212ENST00000423061 DEFB4AO15263 64 aa2.33□□□□□ -2.04
SYNE1-212ENST00000423061 IGLV8-61A0A075B6I0 122 aa2.33□□□□□ -2.04
SYNE1-212ENST00000423061 CAMK2N1Q7Z7J9 78 aa2.33□□□□□ -2.04
SYNE1-212ENST00000423061 FLG2Q5D862 2391 aaPredicted RBP2.33□□□□□ -2.04
SYNE1-212ENST00000423061 CDC42SE1Q9NRR8 79 aa2.33□□□□□ -2.04
SYNE1-212ENST00000423061 KIAA0087Q14695 138 aa2.32□□□□□ -2.04
SYNE1-212ENST00000423061 IGLV5-45A0A087WSX0 123 aa2.32□□□□□ -2.04
SYNE1-212ENST00000423061 PLA2G1BP04054 148 aaKnown RBP2.32□□□□□ -2.04
SYNE1-212ENST00000423061 DEFB114Q30KQ6 69 aa2.32□□□□□ -2.04
SYNE1-212ENST00000423061 FAM104AQ969W3 186 aa2.32□□□□□ -2.04
SYNE1-212ENST00000423061 TRANK1O15050 2925 aa2.32□□□□□ -2.04
SYNE1-212ENST00000423061 Q8N9P0 234 aaPredicted RBP2.31□□□□□ -2.04
SYNE1-212ENST00000423061 PCNTO95613 3336 aa2.31□□□□□ -2.04
SYNE1-212ENST00000423061 IGLV1-40P01703 118 aa2.31□□□□□ -2.04
SYNE1-212ENST00000423061 FLNBO75369 2602 aaKnown RBP2.31□□□□□ -2.04
SYNE1-212ENST00000423061 A0A0G2JQZ4 141 aa2.31□□□□□ -2.04
SYNE1-212ENST00000423061 A0A1W2PNN7 141 aa2.31□□□□□ -2.04
SYNE1-212ENST00000423061 PRO3102Q9H379 93 aa2.31□□□□□ -2.04
SYNE1-212ENST00000423061 DMBT1Q9UGM3 2413 aaPredicted RBP2.31□□□□□ -2.04
SYNE1-212ENST00000423061 DEFB113Q30KQ7 82 aa2.31□□□□□ -2.04
SYNE1-212ENST00000423061 KPRPQ5T749 579 aaPredicted RBP2.31□□□□□ -2.04
SYNE1-212ENST00000423061 Q75L30 129 aa2.31□□□□□ -2.04
SYNE1-212ENST00000423061 EGFEM1PQ0D2K5 195 aa2.31□□□□□ -2.04
SYNE1-212ENST00000423061 C1orf137Q5JT78 98 aa2.31□□□□□ -2.04
SYNE1-212ENST00000423061 IGKV2-24A0A0C4DH68 120 aa2.31□□□□□ -2.04
SYNE1-212ENST00000423061 BPTFQ12830 3046 aa2.3□□□□□ -2.04
SYNE1-212ENST00000423061 ELOF1P60002 83 aaKnown RBP2.3□□□□□ -2.04
SYNE1-212ENST00000423061 IGHV6-1A0A0B4J1U7 121 aa2.3□□□□□ -2.04
SYNE1-212ENST00000423061 CEP350Q5VT06 3117 aa2.3□□□□□ -2.04
SYNE1-212ENST00000423061 UNC79Q9P2D8 2635 aa2.3□□□□□ -2.04
SYNE1-212ENST00000423061 CYSRT1A8MQ03 144 aa2.3□□□□□ -2.04
SYNE1-212ENST00000423061 LELP1Q5T871 98 aa2.3□□□□□ -2.04
SYNE1-212ENST00000423061 PLA2G2AP14555 144 aa2.3□□□□□ -2.04
SYNE1-212ENST00000423061 ZNF702PQ9H963 129 aa2.3□□□□□ -2.04
SYNE1-212ENST00000423061 ODF3L2Q3SX64 289 aa2.3□□□□□ -2.04
SYNE1-212ENST00000423061 SSBP3-AS1Q7Z2R9 100 aa2.3□□□□□ -2.04
SYNE1-212ENST00000423061 A0A096LNI7 61 aa2.29□□□□□ -2.04
SYNE1-212ENST00000423061 Q6YL49 198 aa2.29□□□□□ -2.04
SYNE1-212ENST00000423061 HECTD1Q9ULT8 2610 aa2.29□□□□□ -2.04
SYNE1-212ENST00000423061 MGAM2Q2M2H8 2515 aa2.29□□□□□ -2.04
SYNE1-212ENST00000423061 NOTCH1P46531 2555 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms