RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 DAD1P61803 113 aa6.66□□□□□ -1.34
CD44-206ENST00000415148 SERP2Q8N6R1 65 aa6.66□□□□□ -1.34
CD44-206ENST00000415148 DSCR8Q96T75 97 aa6.66□□□□□ -1.34
CD44-206ENST00000415148 C6orf99Q4VX62 202 aa6.65□□□□□ -1.34
CD44-206ENST00000415148 BAHCC1Q9P281 2608 aa6.65□□□□□ -1.35
CD44-206ENST00000415148 LELP1Q5T871 98 aa6.65□□□□□ -1.35
CD44-206ENST00000415148 TRAV23DV6A0A075B6W5 121 aa6.64□□□□□ -1.35
CD44-206ENST00000415148 J3KT08 172 aa6.64□□□□□ -1.35
CD44-206ENST00000415148 MIFP14174 115 aa6.64□□□□□ -1.35
CD44-206ENST00000415148 ENHOQ6UWT2 76 aa6.64□□□□□ -1.35
CD44-206ENST00000415148 ITPR2Q14571 2701 aa6.64□□□□□ -1.35
CD44-206ENST00000415148 GVQW2A0A096LPI5 108 aaPredicted RBP6.64□□□□□ -1.35
CD44-206ENST00000415148 DPH3Q96FX2 82 aa6.64□□□□□ -1.35
CD44-206ENST00000415148 PRR34Q9NV39 138 aa6.64□□□□□ -1.35
CD44-206ENST00000415148 LOC110117498A0A087WWA1 95 aa6.63□□□□□ -1.35
CD44-206ENST00000415148 ZNF561-AS1K7EIQ3 104 aa6.63□□□□□ -1.35
CD44-206ENST00000415148 IGLV6-57P01721 117 aa6.63□□□□□ -1.35
CD44-206ENST00000415148 SPAG11BQ08648 103 aa6.63□□□□□ -1.35
CD44-206ENST00000415148 DEFB135Q30KP9 77 aa6.63□□□□□ -1.35
CD44-206ENST00000415148 UBL5Q9BZL1 73 aa6.63□□□□□ -1.35
CD44-206ENST00000415148 DEFB4AO15263 64 aa6.62□□□□□ -1.35
CD44-206ENST00000415148 RPS28P62857 69 aaKnown RBP6.62□□□□□ -1.35
CD44-206ENST00000415148 C10orf25Q5T742 122 aa6.62□□□□□ -1.35
CD44-206ENST00000415148 UNQ6190/PRO20217Q6UXQ8 127 aa6.62□□□□□ -1.35
CD44-206ENST00000415148 C6orf223Q8N319 242 aa6.62□□□□□ -1.35
CD44-206ENST00000415148 SPART-AS1P0CW21 52 aa6.62□□□□□ -1.35
CD44-206ENST00000415148 RBM3P98179 157 aaKnown RBP6.62□□□□□ -1.35
CD44-206ENST00000415148 Q8NAQ8 132 aa6.62□□□□□ -1.35
CD44-206ENST00000415148 PDZD2O15018 2839 aa6.61□□□□□ -1.35
CD44-206ENST00000415148 CYSRT1A8MQ03 144 aa6.61□□□□□ -1.35
CD44-206ENST00000415148 GHRHP01286 108 aa6.61□□□□□ -1.35
CD44-206ENST00000415148 PDE6GP18545 87 aa6.61□□□□□ -1.35
CD44-206ENST00000415148 Q6ZQT0 140 aa6.61□□□□□ -1.35
CD44-206ENST00000415148 BCE1O60756 84 aa6.6□□□□□ -1.35
CD44-206ENST00000415148 TMEM258P61165 79 aa6.6□□□□□ -1.35
CD44-206ENST00000415148 CELA1Q9UNI1 258 aa6.6□□□□□ -1.35
CD44-206ENST00000415148 TRBV7-6A0A0J9YX20 115 aa6.59□□□□□ -1.35
CD44-206ENST00000415148 KLK12Q9UKR0 248 aa6.58□□□□□ -1.36
CD44-206ENST00000415148 C4orf26Q17RF5 130 aa6.58□□□□□ -1.36
CD44-206ENST00000415148 LAMTOR3Q9UHA4 124 aa6.58□□□□□ -1.36
CD44-206ENST00000415148 TRRAPQ9Y4A5 3859 aa6.58□□□□□ -1.36
CD44-206ENST00000415148 TENM1Q9UKZ4 2725 aa6.57□□□□□ -1.36
CD44-206ENST00000415148 FLNBO75369 2602 aaKnown RBP6.57□□□□□ -1.36
CD44-206ENST00000415148 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.57□□□□□ -1.36
CD44-206ENST00000415148 C20orf197Q8N268 126 aa6.57□□□□□ -1.36
CD44-206ENST00000415148 DIRC1Q969H9 104 aa6.57□□□□□ -1.36
CD44-206ENST00000415148 SMR3AQ99954 134 aa6.57□□□□□ -1.36
CD44-206ENST00000415148 TRAV10A0A0B4J240 114 aa6.56□□□□□ -1.36
CD44-206ENST00000415148 C6orf48Q9UBA6 75 aa6.56□□□□□ -1.36
CD44-206ENST00000415148 NDUFC2-KCTD14E9PQ53 114 aa6.55□□□□□ -1.36
CD44-206ENST00000415148 H3BNG1 76 aa6.55□□□□□ -1.36
CD44-206ENST00000415148 Q5XG85 94 aa6.55□□□□□ -1.36
CD44-206ENST00000415148 Q6ZQY7 126 aa6.55□□□□□ -1.36
CD44-206ENST00000415148 NOTCH2Q04721 2471 aa6.55□□□□□ -1.36
CD44-206ENST00000415148 HIVEP1P15822 2718 aa6.55□□□□□ -1.36
CD44-206ENST00000415148 WIPF1O43516 503 aa6.55□□□□□ -1.36
CD44-206ENST00000415148 HTN3P15516 51 aa6.55□□□□□ -1.36
CD44-206ENST00000415148 CXCL6P80162 114 aa6.54□□□□□ -1.36
CD44-206ENST00000415148 HIVEP2P31629 2446 aa6.54□□□□□ -1.36
CD44-206ENST00000415148 PKD1L1Q8TDX9 2849 aa6.54□□□□□ -1.36
CD44-206ENST00000415148 ZNF73O43830 326 aaPredicted RBP6.54□□□□□ -1.36
CD44-206ENST00000415148 COX7BP24311 80 aa6.54□□□□□ -1.36
CD44-206ENST00000415148 ELOF1P60002 83 aaKnown RBP6.54□□□□□ -1.36
CD44-206ENST00000415148 LINC01547P58512 204 aaPredicted RBP6.53□□□□□ -1.36
CD44-206ENST00000415148 EGFEM1PQ0D2K5 195 aa6.53□□□□□ -1.36
CD44-206ENST00000415148 C5orf47Q569G3 176 aa6.53□□□□□ -1.36
CD44-206ENST00000415148 Q6ZVQ6 151 aa6.53□□□□□ -1.36
CD44-206ENST00000415148 SCXQ7RTU7 201 aa6.53□□□□□ -1.36
CD44-206ENST00000415148 XAGE1AQ9HD64 81 aa6.53□□□□□ -1.36
CD44-206ENST00000415148 TRBV7-4A0A0J9YYF1 115 aa6.52□□□□□ -1.37
CD44-206ENST00000415148 F8WDY8 70 aa6.52□□□□□ -1.37
CD44-206ENST00000415148 M0R378 163 aa6.52□□□□□ -1.37
CD44-206ENST00000415148 HAMPP81172 84 aa6.52□□□□□ -1.37
CD44-206ENST00000415148 HRCT1Q6UXD1 115 aa6.52□□□□□ -1.37
CD44-206ENST00000415148 VPREB1P12018 145 aa6.52□□□□□ -1.37
CD44-206ENST00000415148 SNURFQ9Y675 71 aa6.52□□□□□ -1.37
CD44-206ENST00000415148 TRAV7A0A075B6U4 112 aa6.51□□□□□ -1.37
CD44-206ENST00000415148 KRTAP26-1Q6PEX3 210 aa6.51□□□□□ -1.37
CD44-206ENST00000415148 CAMK2N2Q96S95 79 aa6.51□□□□□ -1.37
CD44-206ENST00000415148 OTOGQ6ZRI0 2925 aa6.51□□□□□ -1.37
CD44-206ENST00000415148 H7BZZ5 65 aa6.5□□□□□ -1.37
CD44-206ENST00000415148 RMI2Q96E14 147 aa6.5□□□□□ -1.37
CD44-206ENST00000415148 KPRPQ5T749 579 aaPredicted RBP6.49□□□□□ -1.37
CD44-206ENST00000415148 INAFM1C9JVW0 142 aa6.48□□□□□ -1.37
CD44-206ENST00000415148 LINC00528Q8N1L1 170 aa6.48□□□□□ -1.37
CD44-206ENST00000415148 Q6ZRU5 148 aa6.47□□□□□ -1.37
CD44-206ENST00000415148 WFDC10BQ8IUB3 73 aa6.47□□□□□ -1.37
CD44-206ENST00000415148 TM2D3Q9BRN9 247 aa6.47□□□□□ -1.37
CD44-206ENST00000415148 FAM236DA0A1B0GTK5 79 aa6.47□□□□□ -1.37
CD44-206ENST00000415148 FAM236CP0DP71 79 aa6.47□□□□□ -1.37
CD44-206ENST00000415148 HIGD2BQ4VC39 106 aa6.47□□□□□ -1.37
CD44-206ENST00000415148 C15orf56Q8N910 161 aa6.47□□□□□ -1.37
CD44-206ENST00000415148 Q8N9L7 120 aa6.46□□□□□ -1.37
CD44-206ENST00000415148 KLKP1Q107X0 134 aa6.45□□□□□ -1.38
CD44-206ENST00000415148 ANK2Q01484 3957 aa6.45□□□□□ -1.38
CD44-206ENST00000415148 LINC01556Q5JQF7 62 aa6.44□□□□□ -1.38
CD44-206ENST00000415148 C1orf43Q9BWL3 253 aa6.44□□□□□ -1.38
CD44-206ENST00000415148 EPM2AB3EWF7 344 aa6.44□□□□□ -1.38
CD44-206ENST00000415148 ESRGQ1W209 222 aa6.44□□□□□ -1.38
CD44-206ENST00000415148 TEP1Q99973 2627 aaKnown RBP6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms