RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TM2D3Q9BRN9 247 aa9.12□□□□□ -0.95
COL6A3-206ENST00000409809 LINC00336Q6ZUF6 198 aa9.12□□□□□ -0.95
COL6A3-206ENST00000409809 SPANXA2-OT1Q8N9U9 137 aa9.12□□□□□ -0.95
COL6A3-206ENST00000409809 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-206ENST00000409809 PRR3P79522 188 aaKnown RBP9.09□□□□□ -0.95
COL6A3-206ENST00000409809 IGHV3OR16-9A0A0B4J2B5 98 aa9.09□□□□□ -0.95
COL6A3-206ENST00000409809 CIRBP-AS1Q8TBR5 109 aa9.07□□□□□ -0.96
COL6A3-206ENST00000409809 C11orf71Q6IPW1 123 aa9.07□□□□□ -0.96
COL6A3-206ENST00000409809 KIF25-AS1Q9Y6Z4 181 aa9.07□□□□□ -0.96
COL6A3-206ENST00000409809 COA5Q86WW8 74 aa9.07□□□□□ -0.96
COL6A3-206ENST00000409809 USP24Q9UPU5 2620 aa9.06□□□□□ -0.96
COL6A3-206ENST00000409809 CR1P17927 2039 aa9.06□□□□□ -0.96
COL6A3-206ENST00000409809 CRIPTQ9P021 101 aa9.06□□□□□ -0.96
COL6A3-206ENST00000409809 MDFIQ99750 246 aa9.06□□□□□ -0.96
COL6A3-206ENST00000409809 H7BZZ5 65 aa9.06□□□□□ -0.96
COL6A3-206ENST00000409809 CDC42SE1Q9NRR8 79 aa9.05□□□□□ -0.96
COL6A3-206ENST00000409809 Q1T7F1 81 aa9.05□□□□□ -0.96
COL6A3-206ENST00000409809 SPINK1P00995 79 aa9.05□□□□□ -0.96
COL6A3-206ENST00000409809 X6R8D5 127 aa9.05□□□□□ -0.96
COL6A3-206ENST00000409809 FAM229AH3BQW9 127 aa9.04□□□□□ -0.96
COL6A3-206ENST00000409809 IGLV4-60A0A075B6I1 120 aa9.04□□□□□ -0.96
COL6A3-206ENST00000409809 Q8NA96 180 aa9.04□□□□□ -0.96
COL6A3-206ENST00000409809 PLA2G5P39877 138 aa9.04□□□□□ -0.96
COL6A3-206ENST00000409809 Q6ZRX8 168 aa9.04□□□□□ -0.96
COL6A3-206ENST00000409809 PRLHP81277 87 aa9.03□□□□□ -0.96
COL6A3-206ENST00000409809 PRRC2CQ9Y520 2896 aaKnown RBP9.03□□□□□ -0.96
COL6A3-206ENST00000409809 A8MWP4 228 aa9.03□□□□□ -0.96
COL6A3-206ENST00000409809 KIAA0087Q14695 138 aa9.03□□□□□ -0.96
COL6A3-206ENST00000409809 NUPR2A6NF83 97 aa9.03□□□□□ -0.96
COL6A3-206ENST00000409809 MIR22HGQ0VDD5 57 aa9.03□□□□□ -0.96
COL6A3-206ENST00000409809 LY6G6DO95868 133 aa9.02□□□□□ -0.96
COL6A3-206ENST00000409809 LINC01600Q96MT4 127 aa9.02□□□□□ -0.97
COL6A3-206ENST00000409809 FAM218AQ96MZ4 157 aa9.02□□□□□ -0.97
COL6A3-206ENST00000409809 IGKV2D-30A0A075B6S6 120 aa9.01□□□□□ -0.97
COL6A3-206ENST00000409809 IGKV2-30P06310 120 aa9.01□□□□□ -0.97
COL6A3-206ENST00000409809 EPG5Q9HCE0 2579 aa9□□□□□ -0.97
COL6A3-206ENST00000409809 A8MUN3 132 aa9□□□□□ -0.97
COL6A3-206ENST00000409809 SSBP3-AS1Q7Z2R9 100 aa9□□□□□ -0.97
COL6A3-206ENST00000409809 SMCR5Q8TEV8 140 aa9□□□□□ -0.97
COL6A3-206ENST00000409809 GVQW2A0A096LPI5 108 aaPredicted RBP9□□□□□ -0.97
COL6A3-206ENST00000409809 LINC01006Q8NI28 216 aa8.99□□□□□ -0.97
COL6A3-206ENST00000409809 IGLV1-51P01701 117 aa8.99□□□□□ -0.97
COL6A3-206ENST00000409809 Q9UF83 564 aa8.99□□□□□ -0.97
COL6A3-206ENST00000409809 ODF3L2Q3SX64 289 aa8.99□□□□□ -0.97
COL6A3-206ENST00000409809 IGLV6-57P01721 117 aa8.98□□□□□ -0.97
COL6A3-206ENST00000409809 PLA2G2AP14555 144 aa8.97□□□□□ -0.97
COL6A3-206ENST00000409809 EDN2P20800 178 aa8.97□□□□□ -0.97
COL6A3-206ENST00000409809 H3BNG1 76 aa8.96□□□□□ -0.98
COL6A3-206ENST00000409809 A0A1W2PNU3 283 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-206ENST00000409809 A8MTW9 85 aa8.94□□□□□ -0.98
COL6A3-206ENST00000409809 RPL37AP61513 92 aaKnown RBP8.93□□□□□ -0.98
COL6A3-206ENST00000409809 FHL3Q13643 280 aa8.93□□□□□ -0.98
COL6A3-206ENST00000409809 LINC00476Q8WZB0 136 aa8.93□□□□□ -0.98
COL6A3-206ENST00000409809 FSHBP01225 129 aa8.93□□□□□ -0.98
COL6A3-206ENST00000409809 LINC00315P59091 139 aa8.93□□□□□ -0.98
COL6A3-206ENST00000409809 LINC00313P59037 77 aa8.92□□□□□ -0.98
COL6A3-206ENST00000409809 LITAFQ99732 161 aa8.92□□□□□ -0.98
COL6A3-206ENST00000409809 DEFB116Q30KQ4 102 aa8.92□□□□□ -0.98
COL6A3-206ENST00000409809 LINC01556Q5JQF7 62 aa8.92□□□□□ -0.98
COL6A3-206ENST00000409809 PRO3102Q9H379 93 aa8.91□□□□□ -0.98
COL6A3-206ENST00000409809 C22orf24Q9Y442 160 aa8.91□□□□□ -0.98
COL6A3-206ENST00000409809 EPM2AB3EWF7 344 aa8.91□□□□□ -0.98
COL6A3-206ENST00000409809 LUZP6Q538Z0 58 aa8.91□□□□□ -0.98
COL6A3-206ENST00000409809 Q6ZRP5 223 aa8.9□□□□□ -0.98
COL6A3-206ENST00000409809 LYPD5Q6UWN5 251 aa8.9□□□□□ -0.98
COL6A3-206ENST00000409809 Q6ZRU5 148 aa8.9□□□□□ -0.99
COL6A3-206ENST00000409809 FLNBO75369 2602 aaKnown RBP8.89□□□□□ -0.99
COL6A3-206ENST00000409809 C10orf142B7Z368 130 aa8.89□□□□□ -0.99
COL6A3-206ENST00000409809 M0R2N4 97 aa8.88□□□□□ -0.99
COL6A3-206ENST00000409809 Q6ZSN1 163 aa8.88□□□□□ -0.99
COL6A3-206ENST00000409809 IGLV5-52A0A0A0MRZ9 124 aa8.88□□□□□ -0.99
COL6A3-206ENST00000409809 Q75L30 129 aa8.86□□□□□ -0.99
COL6A3-206ENST00000409809 WISP2O76076 250 aa8.85□□□□□ -0.99
COL6A3-206ENST00000409809 AVPP01185 164 aa8.85□□□□□ -0.99
COL6A3-206ENST00000409809 MRPL34Q9BQ48 92 aaKnown RBP8.85□□□□□ -0.99
COL6A3-206ENST00000409809 C16orf95Q9H693 158 aa8.84□□□□□ -0.99
COL6A3-206ENST00000409809 K7EQZ3 153 aa8.84□□□□□ -0.99
COL6A3-206ENST00000409809 LY6G6CO95867 125 aa8.84□□□□□ -0.99
COL6A3-206ENST00000409809 LINC00167Q96N53 147 aa8.84□□□□□ -0.99
COL6A3-206ENST00000409809 MAST4O15021 2626 aa8.83□□□□□ -1
COL6A3-206ENST00000409809 RBM12B-AS1Q9P1G2 102 aa8.83□□□□□ -1
COL6A3-206ENST00000409809 C10orf99Q6UWK7 81 aa8.82□□□□□ -1
COL6A3-206ENST00000409809 C19orf84I3L1E1 186 aa8.81□□□□□ -1
COL6A3-206ENST00000409809 C16orf90A8MZG2 172 aa8.81□□□□□ -1
COL6A3-206ENST00000409809 LINC01554Q52M75 96 aa8.8□□□□□ -1
COL6A3-206ENST00000409809 KCNQ1DNQ9H478 68 aa8.8□□□□□ -1
COL6A3-206ENST00000409809 OBSCN-AS1Q96MR7 158 aa8.79□□□□□ -1
COL6A3-206ENST00000409809 COL4A2P08572 1712 aa8.78□□□□□ -1
COL6A3-206ENST00000409809 BPTFQ12830 3046 aa8.78□□□□□ -1
COL6A3-206ENST00000409809 ASB16-AS1Q495Z4 193 aa8.78□□□□□ -1
COL6A3-206ENST00000409809 H3BS24 57 aa8.77□□□□□ -1.01
COL6A3-206ENST00000409809 KLK9Q2XQG4 91 aa8.77□□□□□ -1.01
COL6A3-206ENST00000409809 INAFM1C9JVW0 142 aa8.77□□□□□ -1.01
COL6A3-206ENST00000409809 DMAC1Q96GE9 116 aa8.76□□□□□ -1.01
COL6A3-206ENST00000409809 IGLV8-61A0A075B6I0 122 aa8.76□□□□□ -1.01
COL6A3-206ENST00000409809 LINC00528Q8N1L1 170 aa8.76□□□□□ -1.01
COL6A3-206ENST00000409809 C18orf65Q6ZTR6 163 aa8.73□□□□□ -1.01
COL6A3-206ENST00000409809 A0A0A0MQY5 61 aa8.73□□□□□ -1.01
COL6A3-206ENST00000409809 A0A1B0GVX0 72 aa8.73□□□□□ -1.01
COL6A3-206ENST00000409809 ATRQ13535 2644 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms