RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LAMTOR3Q9UHA4 124 aa9.09□□□□□ -0.95
VPS54-203ENST00000409558 A0A087WVE0 104 aa9.09□□□□□ -0.95
VPS54-203ENST00000409558 CXCL5P42830 114 aa9.09□□□□□ -0.95
VPS54-203ENST00000409558 LYPD5Q6UWN5 251 aa9.09□□□□□ -0.95
VPS54-203ENST00000409558 ENHOQ6UWT2 76 aa9.08□□□□□ -0.96
VPS54-203ENST00000409558 CAMK2N2Q96S95 79 aa9.08□□□□□ -0.96
VPS54-203ENST00000409558 C22orf24Q9Y442 160 aa9.08□□□□□ -0.96
VPS54-203ENST00000409558 TENM2Q9NT68 2774 aa9.08□□□□□ -0.96
VPS54-203ENST00000409558 NHLRC4P0CG21 123 aaPredicted RBP9.07□□□□□ -0.96
VPS54-203ENST00000409558 KRTAP24-1Q3LI83 254 aa9.07□□□□□ -0.96
VPS54-203ENST00000409558 ORMDL1Q9P0S3 153 aa9.07□□□□□ -0.96
VPS54-203ENST00000409558 LELP1Q5T871 98 aa9.07□□□□□ -0.96
VPS54-203ENST00000409558 H0YGX0 51 aa9.05□□□□□ -0.96
VPS54-203ENST00000409558 TMEM126AQ9H061 195 aa9.05□□□□□ -0.96
VPS54-203ENST00000409558 LINC00846Q9NV44 126 aa9.05□□□□□ -0.96
VPS54-203ENST00000409558 INAFM2P0DMQ5 153 aa9.04□□□□□ -0.96
VPS54-203ENST00000409558 DEFB131BA0A096LNP1 70 aa9.04□□□□□ -0.96
VPS54-203ENST00000409558 ESRGQ1W209 222 aa9.04□□□□□ -0.96
VPS54-203ENST00000409558 TRBV10-3A0A0K0K1G6 114 aa9.03□□□□□ -0.96
VPS54-203ENST00000409558 M0QXV9 152 aa9.03□□□□□ -0.96
VPS54-203ENST00000409558 C6orf48Q9UBA6 75 aa9.02□□□□□ -0.96
VPS54-203ENST00000409558 ANK2Q01484 3957 aa9.02□□□□□ -0.97
VPS54-203ENST00000409558 DEFB105AQ8NG35 78 aa9.02□□□□□ -0.97
VPS54-203ENST00000409558 Q6ZQY7 126 aa9.01□□□□□ -0.97
VPS54-203ENST00000409558 C11orf45Q8TAV5 145 aa9.01□□□□□ -0.97
VPS54-203ENST00000409558 Q8N814 137 aa9.01□□□□□ -0.97
VPS54-203ENST00000409558 C1orf43Q9BWL3 253 aa9.01□□□□□ -0.97
VPS54-203ENST00000409558 Q6ZRU5 148 aa9□□□□□ -0.97
VPS54-203ENST00000409558 SCXQ7RTU7 201 aa8.99□□□□□ -0.97
VPS54-203ENST00000409558 LINC00643Q86TS7 51 aa8.98□□□□□ -0.97
VPS54-203ENST00000409558 HAMPP81172 84 aa8.97□□□□□ -0.97
VPS54-203ENST00000409558 M0R2N4 97 aa8.97□□□□□ -0.97
VPS54-203ENST00000409558 hADV29S1A0JD25 119 aa8.96□□□□□ -0.97
VPS54-203ENST00000409558 RPL37AP8A6NKH3 93 aa8.96□□□□□ -0.97
VPS54-203ENST00000409558 FAM240AA0A1B0GVK7 77 aa8.96□□□□□ -0.98
VPS54-203ENST00000409558 KLK5Q9Y337 293 aaPredicted RBP8.95□□□□□ -0.98
VPS54-203ENST00000409558 CASC10Q5T4H9 136 aa8.95□□□□□ -0.98
VPS54-203ENST00000409558 ACYP1P07311 99 aa8.94□□□□□ -0.98
VPS54-203ENST00000409558 TRAV23DV6A0A075B6W5 121 aa8.94□□□□□ -0.98
VPS54-203ENST00000409558 C9orf153Q5TBE3 101 aa8.93□□□□□ -0.98
VPS54-203ENST00000409558 FAM19A1Q7Z5A9 133 aa8.93□□□□□ -0.98
VPS54-203ENST00000409558 A0A1B0GX51 115 aa8.92□□□□□ -0.98
VPS54-203ENST00000409558 COX17Q14061 63 aa8.92□□□□□ -0.98
VPS54-203ENST00000409558 TMEM256-PLSCR3K7ERE1 68 aa8.92□□□□□ -0.98
VPS54-203ENST00000409558 DIRC1Q969H9 104 aa8.91□□□□□ -0.98
VPS54-203ENST00000409558 PRR34Q9NV39 138 aa8.91□□□□□ -0.98
VPS54-203ENST00000409558 LINC00575Q6W349 94 aa8.91□□□□□ -0.98
VPS54-203ENST00000409558 SMIM20Q8N5G0 67 aa8.91□□□□□ -0.98
VPS54-203ENST00000409558 RBM3P98179 157 aaKnown RBP8.91□□□□□ -0.98
VPS54-203ENST00000409558 ZNF73O43830 326 aaPredicted RBP8.9□□□□□ -0.98
VPS54-203ENST00000409558 Q6ZRP5 223 aa8.9□□□□□ -0.98
VPS54-203ENST00000409558 FAM168BA1KXE4 195 aa8.9□□□□□ -0.99
VPS54-203ENST00000409558 C3orf22Q8N5N4 141 aa8.89□□□□□ -0.99
VPS54-203ENST00000409558 IGKV2-24A0A0C4DH68 120 aa8.89□□□□□ -0.99
VPS54-203ENST00000409558 C15orf56Q8N910 161 aa8.89□□□□□ -0.99
VPS54-203ENST00000409558 NKAPP1Q8N9T2 125 aa8.89□□□□□ -0.99
VPS54-203ENST00000409558 NDUFC2O95298 119 aa8.88□□□□□ -0.99
VPS54-203ENST00000409558 DSCR8Q96T75 97 aa8.88□□□□□ -0.99
VPS54-203ENST00000409558 TRBV7-7A0A0K0K1E9 115 aa8.88□□□□□ -0.99
VPS54-203ENST00000409558 LINC01600Q96MT4 127 aa8.88□□□□□ -0.99
VPS54-203ENST00000409558 COX7BP24311 80 aa8.87□□□□□ -0.99
VPS54-203ENST00000409558 SYCNQ0VAF6 134 aa8.87□□□□□ -0.99
VPS54-203ENST00000409558 Q6Q795 121 aa8.87□□□□□ -0.99
VPS54-203ENST00000409558 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.87□□□□□ -0.99
VPS54-203ENST00000409558 CCKP06307 115 aa8.87□□□□□ -0.99
VPS54-203ENST00000409558 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.87□□□□□ -0.99
VPS54-203ENST00000409558 FAM19A5Q7Z5A7 132 aaPredicted RBP8.87□□□□□ -0.99
VPS54-203ENST00000409558 LINC01561Q8N1V8 128 aa8.87□□□□□ -0.99
VPS54-203ENST00000409558 UBL5Q9BZL1 73 aa8.86□□□□□ -0.99
VPS54-203ENST00000409558 JMJD7-PLA2G4BH0Y9G9 81 aa8.85□□□□□ -0.99
VPS54-203ENST00000409558 C3orf84H3BNL1 204 aa8.85□□□□□ -0.99
VPS54-203ENST00000409558 SERTAD4-AS1Q5TG53 156 aa8.85□□□□□ -0.99
VPS54-203ENST00000409558 Q8N9L7 120 aa8.84□□□□□ -0.99
VPS54-203ENST00000409558 LINC00588Q9Y4M8 146 aa8.84□□□□□ -1
VPS54-203ENST00000409558 SRRM2Q9UQ35 2752 aaKnown RBP8.83□□□□□ -1
VPS54-203ENST00000409558 USP17L23D6RBM5 183 aa8.83□□□□□ -1
VPS54-203ENST00000409558 NDUFC2-KCTD14E9PQ53 114 aa8.83□□□□□ -1
VPS54-203ENST00000409558 IGLV6-57P01721 117 aa8.83□□□□□ -1
VPS54-203ENST00000409558 VPREB1P12018 145 aa8.82□□□□□ -1
VPS54-203ENST00000409558 UPK3BQ9BT76 320 aa8.81□□□□□ -1
VPS54-203ENST00000409558 A0A0G2JQZ4 141 aa8.81□□□□□ -1
VPS54-203ENST00000409558 A0A1W2PNN7 141 aa8.81□□□□□ -1
VPS54-203ENST00000409558 CYSTM1Q9H1C7 97 aa8.81□□□□□ -1
VPS54-203ENST00000409558 EGFEM1PQ0D2K5 195 aa8.8□□□□□ -1
VPS54-203ENST00000409558 PSCAO43653 123 aa8.8□□□□□ -1
VPS54-203ENST00000409558 GHRHP01286 108 aa8.79□□□□□ -1
VPS54-203ENST00000409558 DPH3Q96FX2 82 aa8.79□□□□□ -1
VPS54-203ENST00000409558 UBE2DNLQ8IWF7 75 aa8.79□□□□□ -1
VPS54-203ENST00000409558 M0R378 163 aa8.78□□□□□ -1
VPS54-203ENST00000409558 FUSP35637 526 aaKnown RBP eCLIP8.78□□□□□ -1
VPS54-203ENST00000409558 K7EIL1 84 aa8.78□□□□□ -1
VPS54-203ENST00000409558 KRTAP26-1Q6PEX3 210 aa8.78□□□□□ -1
VPS54-203ENST00000409558 C7orf33Q8WU49 177 aa8.78□□□□□ -1
VPS54-203ENST00000409558 COL7A1Q02388 2944 aa8.78□□□□□ -1
VPS54-203ENST00000409558 IMUPQ9GZP8 106 aa8.78□□□□□ -1
VPS54-203ENST00000409558 UBE2BP63146 152 aa8.77□□□□□ -1.01
VPS54-203ENST00000409558 LINC01556Q5JQF7 62 aa8.77□□□□□ -1.01
VPS54-203ENST00000409558 ST20-AS1Q8NBB2 130 aa8.77□□□□□ -1.01
VPS54-203ENST00000409558 LYSTQ99698 3801 aa8.77□□□□□ -1.01
VPS54-203ENST00000409558 Q6JHZ5 121 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms