RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 A0A087X002 238 aa11.6□□□□□ -0.55
TSPAN4-209ENST00000409543 SERF1AO75920 110 aa11.6□□□□□ -0.55
TSPAN4-209ENST00000409543 LEPROTL1O95214 131 aa11.6□□□□□ -0.55
TSPAN4-209ENST00000409543 LINC00310P59036 64 aa11.6□□□□□ -0.55
TSPAN4-209ENST00000409543 A0A0U1RRA0 63 aa11.59□□□□□ -0.55
TSPAN4-209ENST00000409543 TMEM238C9JI98 176 aa11.59□□□□□ -0.55
TSPAN4-209ENST00000409543 HERV-K104P63124 156 aa11.59□□□□□ -0.55
TSPAN4-209ENST00000409543 RNF213Q63HN8 5207 aa11.59□□□□□ -0.55
TSPAN4-209ENST00000409543 H0Y8G0 127 aa11.58□□□□□ -0.56
TSPAN4-209ENST00000409543 M0R378 163 aa11.58□□□□□ -0.56
TSPAN4-209ENST00000409543 SMIM13P0DJ93 91 aa11.58□□□□□ -0.56
TSPAN4-209ENST00000409543 FAM19A1Q7Z5A9 133 aa11.58□□□□□ -0.56
TSPAN4-209ENST00000409543 COLCA2A8K830 154 aa11.57□□□□□ -0.56
TSPAN4-209ENST00000409543 ATP6V1G1O75348 118 aa11.57□□□□□ -0.56
TSPAN4-209ENST00000409543 PRLHP81277 87 aa11.57□□□□□ -0.56
TSPAN4-209ENST00000409543 TYMSOSQ8TAI1 123 aa11.57□□□□□ -0.56
TSPAN4-209ENST00000409543 LINC00587B1AMM8 73 aa11.56□□□□□ -0.56
TSPAN4-209ENST00000409543 MEIG1Q5JSS6 88 aa11.56□□□□□ -0.56
TSPAN4-209ENST00000409543 ANAPC11Q9NYG5 84 aa11.56□□□□□ -0.56
TSPAN4-209ENST00000409543 NDUFA12Q9UI09 145 aa11.56□□□□□ -0.56
TSPAN4-209ENST00000409543 HSPB8Q9UJY1 196 aa11.56□□□□□ -0.56
TSPAN4-209ENST00000409543 FAM229BQ4G0N7 80 aa11.55□□□□□ -0.56
TSPAN4-209ENST00000409543 MYMXA0A1B0GTQ4 84 aa11.54□□□□□ -0.56
TSPAN4-209ENST00000409543 PLNP26678 52 aa11.54□□□□□ -0.56
TSPAN4-209ENST00000409543 MIR7-3HGQ8N6C7 128 aa11.53□□□□□ -0.56
TSPAN4-209ENST00000409543 LPAP08519 4548 aa11.53□□□□□ -0.56
TSPAN4-209ENST00000409543 LEPROTO15243 131 aa11.52□□□□□ -0.57
TSPAN4-209ENST00000409543 FABP4P15090 132 aa11.52□□□□□ -0.57
TSPAN4-209ENST00000409543 KRTAP13-2Q52LG2 175 aa11.52□□□□□ -0.57
TSPAN4-209ENST00000409543 BOD1L2Q8IYS8 172 aa11.52□□□□□ -0.57
TSPAN4-209ENST00000409543 MAP1LC3CQ9BXW4 147 aa11.52□□□□□ -0.57
TSPAN4-209ENST00000409543 TSPAN13O95857 204 aa11.51□□□□□ -0.57
TSPAN4-209ENST00000409543 PRR4Q16378 134 aa11.51□□□□□ -0.57
TSPAN4-209ENST00000409543 PLEKHB2Q96CS7 222 aa11.51□□□□□ -0.57
TSPAN4-209ENST00000409543 DPM2O94777 84 aa11.5□□□□□ -0.57
TSPAN4-209ENST00000409543 TSPEAR-AS2P59090 65 aa11.5□□□□□ -0.57
TSPAN4-209ENST00000409543 IGKV2D-26A0A0A0MRZ7 120 aa11.49□□□□□ -0.57
TSPAN4-209ENST00000409543 HERVK_113P61574 105 aa11.48□□□□□ -0.57
TSPAN4-209ENST00000409543 J3QQQ9 107 aa11.47□□□□□ -0.57
TSPAN4-209ENST00000409543 PRYO14603 147 aa11.47□□□□□ -0.57
TSPAN4-209ENST00000409543 IGKCP01834 107 aa11.47□□□□□ -0.57
TSPAN4-209ENST00000409543 PMCHL2Q9BQD1 86 aa11.47□□□□□ -0.57
TSPAN4-209ENST00000409543 NCR3O14931 201 aa11.46□□□□□ -0.57
TSPAN4-209ENST00000409543 HIGD2AQ9BW72 106 aa11.46□□□□□ -0.57
TSPAN4-209ENST00000409543 KCNQ1DNQ9H478 68 aa11.46□□□□□ -0.57
TSPAN4-209ENST00000409543 LOC107984156A0A0G2JMH3 177 aa11.45□□□□□ -0.58
TSPAN4-209ENST00000409543 NMUP48645 174 aa11.45□□□□□ -0.58
TSPAN4-209ENST00000409543 ARL17AQ8IVW1 177 aa11.45□□□□□ -0.58
TSPAN4-209ENST00000409543 SPRR1AP35321 89 aa11.44□□□□□ -0.58
TSPAN4-209ENST00000409543 LINC00337Q8N6G1 96 aa11.44□□□□□ -0.58
TSPAN4-209ENST00000409543 LGALS3P17931 250 aaKnown RBP11.43□□□□□ -0.58
TSPAN4-209ENST00000409543 LINC00304Q8N9R0 145 aa11.43□□□□□ -0.58
TSPAN4-209ENST00000409543 DAND5Q8N907 189 aa11.42□□□□□ -0.58
TSPAN4-209ENST00000409543 TRBV10-3A0A0K0K1G6 114 aa11.41□□□□□ -0.58
TSPAN4-209ENST00000409543 SPRR4Q96PI1 79 aa11.41□□□□□ -0.58
TSPAN4-209ENST00000409543 TRBV10-2A0A0K0K1G8 114 aa11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 KRTAP4-16G5E9R7 235 aaPredicted RBP11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 HIST1H2BKO60814 126 aa11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 HIST1H2BJP06899 126 aa11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 HIST1H2BOP23527 126 aa11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 HIST1H2BBP33778 126 aa11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 HIST1H2BDP58876 126 aa11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 HIST1H2BCP62807 126 aa11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 HIST2H2BEQ16778 126 aa11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 HIST1H2BHQ93079 126 aa11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 HIST1H2BNQ99877 126 aa11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 HIST1H2BMQ99879 126 aa11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 ZNF706Q9Y5V0 76 aaPredicted RBP11.4□□□□□ -0.58
TSPAN4-209ENST00000409543 ETDCA0A1B0GVM5 59 aa11.39□□□□□ -0.59
TSPAN4-209ENST00000409543 CTAG1AP78358 180 aa11.39□□□□□ -0.59
TSPAN4-209ENST00000409543 S100A12P80511 92 aa11.39□□□□□ -0.59
TSPAN4-209ENST00000409543 E9PLD3 99 aa11.38□□□□□ -0.59
TSPAN4-209ENST00000409543 SYS1-DBNDD2H3BUS1 97 aa11.38□□□□□ -0.59
TSPAN4-209ENST00000409543 MIEN1Q9BRT3 115 aa11.38□□□□□ -0.59
TSPAN4-209ENST00000409543 C3orf22Q8N5N4 141 aa11.37□□□□□ -0.59
TSPAN4-209ENST00000409543 NDUFC2O95298 119 aa11.36□□□□□ -0.59
TSPAN4-209ENST00000409543 DDTP30046 118 aa11.36□□□□□ -0.59
TSPAN4-209ENST00000409543 SMCR5Q8TEV8 140 aa11.36□□□□□ -0.59
TSPAN4-209ENST00000409543 SPANXB1Q9NS25 103 aaPredicted RBP11.36□□□□□ -0.59
TSPAN4-209ENST00000409543 A0A0J9YXY3 114 aa11.35□□□□□ -0.59
TSPAN4-209ENST00000409543 B5MCH6 92 aa11.33□□□□□ -0.6
TSPAN4-209ENST00000409543 ADAMTSL4-AS1Q5T5F5 129 aa11.32□□□□□ -0.6
TSPAN4-209ENST00000409543 LINC01545Q5VT33 79 aa11.32□□□□□ -0.6
TSPAN4-209ENST00000409543 SPAG11AQ6PDA7 123 aa11.32□□□□□ -0.6
TSPAN4-209ENST00000409543 PET117Q6UWS5 81 aa11.32□□□□□ -0.6
TSPAN4-209ENST00000409543 IGLV6-57P01721 117 aa11.31□□□□□ -0.6
TSPAN4-209ENST00000409543 S100A7L2Q5SY68 101 aa11.31□□□□□ -0.6
TSPAN4-209ENST00000409543 SOSTDC1Q6X4U4 206 aa11.31□□□□□ -0.6
TSPAN4-209ENST00000409543 RETNLBQ9BQ08 111 aa11.31□□□□□ -0.6
TSPAN4-209ENST00000409543 EIF4EBP3O60516 100 aaPredicted RBP11.29□□□□□ -0.6
TSPAN4-209ENST00000409543 LINC00483Q53H64 154 aa11.29□□□□□ -0.6
TSPAN4-209ENST00000409543 NPC2P61916 151 aa11.28□□□□□ -0.6
TSPAN4-209ENST00000409543 PPDPFQ9H3Y8 114 aa11.28□□□□□ -0.6
TSPAN4-209ENST00000409543 COA6Q5JTJ3 125 aaKnown RBP11.27□□□□□ -0.61
TSPAN4-209ENST00000409543 Q6ZRX8 168 aa11.27□□□□□ -0.61
TSPAN4-209ENST00000409543 TRAV23DV6A0A075B6W5 121 aa11.26□□□□□ -0.61
TSPAN4-209ENST00000409543 TIMM17BO60830 172 aa11.26□□□□□ -0.61
TSPAN4-209ENST00000409543 ERC2-IT1O76042 136 aa11.26□□□□□ -0.61
TSPAN4-209ENST00000409543 LITAFQ99732 161 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 196.1 ms