RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 LINC01556Q5JQF7 62 aa10.04□□□□□ -0.8
GPC3-202ENST00000394299 SS18L2Q9UHA2 77 aa10.04□□□□□ -0.8
GPC3-202ENST00000394299 LINC00588Q9Y4M8 146 aa10.04□□□□□ -0.8
GPC3-202ENST00000394299 XAGE1AQ9HD64 81 aa10.03□□□□□ -0.8
GPC3-202ENST00000394299 STAB2Q8WWQ8 2551 aa10.03□□□□□ -0.8
GPC3-202ENST00000394299 C15orf56Q8N910 161 aa10.03□□□□□ -0.8
GPC3-202ENST00000394299 ZNF561-AS1K7EIQ3 104 aa10.02□□□□□ -0.81
GPC3-202ENST00000394299 BAALC-AS2P0C853 105 aa10.02□□□□□ -0.81
GPC3-202ENST00000394299 C1orf43Q9BWL3 253 aa10.02□□□□□ -0.81
GPC3-202ENST00000394299 C22orf24Q9Y442 160 aa10.02□□□□□ -0.81
GPC3-202ENST00000394299 TRACP01848 142 aa10.01□□□□□ -0.81
GPC3-202ENST00000394299 DNAH1Q9P2D7 4330 aa10.01□□□□□ -0.81
GPC3-202ENST00000394299 CAMK2N2Q96S95 79 aa10.01□□□□□ -0.81
GPC3-202ENST00000394299 SLPIP03973 132 aa10□□□□□ -0.81
GPC3-202ENST00000394299 Q6ZRU5 148 aa10□□□□□ -0.81
GPC3-202ENST00000394299 NDUFC2O95298 119 aa10□□□□□ -0.81
GPC3-202ENST00000394299 ANAPC13Q9BS18 74 aa10□□□□□ -0.81
GPC3-202ENST00000394299 LECT2O14960 151 aa9.99□□□□□ -0.81
GPC3-202ENST00000394299 NHLRC4P0CG21 123 aaPredicted RBP9.99□□□□□ -0.81
GPC3-202ENST00000394299 DNAH10OSP0CZ25 163 aa9.99□□□□□ -0.81
GPC3-202ENST00000394299 CASC10Q5T4H9 136 aa9.99□□□□□ -0.81
GPC3-202ENST00000394299 B5MCH6 92 aa9.97□□□□□ -0.81
GPC3-202ENST00000394299 RPL18AQ02543 176 aaKnown RBP9.97□□□□□ -0.81
GPC3-202ENST00000394299 GVQW2A0A096LPI5 108 aaPredicted RBP9.97□□□□□ -0.81
GPC3-202ENST00000394299 C15orf53Q8NAA6 179 aa9.97□□□□□ -0.81
GPC3-202ENST00000394299 H0YGX0 51 aa9.96□□□□□ -0.81
GPC3-202ENST00000394299 C9orf129Q5T035 196 aaKnown RBP9.96□□□□□ -0.81
GPC3-202ENST00000394299 TMEM126AQ9H061 195 aa9.96□□□□□ -0.81
GPC3-202ENST00000394299 S100A7L2Q5SY68 101 aa9.96□□□□□ -0.82
GPC3-202ENST00000394299 DNAH10Q8IVF4 4471 aa9.95□□□□□ -0.82
GPC3-202ENST00000394299 C6orf99Q4VX62 202 aa9.95□□□□□ -0.82
GPC3-202ENST00000394299 DNAL4O96015 105 aa9.94□□□□□ -0.82
GPC3-202ENST00000394299 GAGE2EQ4V326 116 aa9.94□□□□□ -0.82
GPC3-202ENST00000394299 GAGE2DQ9UEU5 116 aa9.94□□□□□ -0.82
GPC3-202ENST00000394299 TENM2Q9NT68 2774 aa9.93□□□□□ -0.82
GPC3-202ENST00000394299 CSMD3Q7Z407 3707 aa9.93□□□□□ -0.82
GPC3-202ENST00000394299 Q6ZRP5 223 aa9.91□□□□□ -0.82
GPC3-202ENST00000394299 DNAH7Q8WXX0 4024 aa9.91□□□□□ -0.82
GPC3-202ENST00000394299 DNHD1Q96M86 4753 aa9.91□□□□□ -0.82
GPC3-202ENST00000394299 TRBV10-3A0A0K0K1G6 114 aa9.9□□□□□ -0.82
GPC3-202ENST00000394299 C2orf48Q96LS8 159 aa9.9□□□□□ -0.82
GPC3-202ENST00000394299 CCDC179H3BU77 68 aa9.89□□□□□ -0.83
GPC3-202ENST00000394299 IGLV6-57P01721 117 aa9.89□□□□□ -0.83
GPC3-202ENST00000394299 NDUFV3P56181 108 aaKnown RBP9.89□□□□□ -0.83
GPC3-202ENST00000394299 SYCNQ0VAF6 134 aa9.89□□□□□ -0.83
GPC3-202ENST00000394299 MUC7Q8TAX7 377 aa9.89□□□□□ -0.83
GPC3-202ENST00000394299 PLECQ15149 4684 aaKnown RBP9.89□□□□□ -0.83
GPC3-202ENST00000394299 NDUFC2-KCTD14E9PQ53 114 aa9.88□□□□□ -0.83
GPC3-202ENST00000394299 Q8N814 137 aa9.88□□□□□ -0.83
GPC3-202ENST00000394299 GAGE2BQ13066 116 aa9.88□□□□□ -0.83
GPC3-202ENST00000394299 USP17L23D6RBM5 183 aa9.87□□□□□ -0.83
GPC3-202ENST00000394299 VPREB1P12018 145 aa9.87□□□□□ -0.83
GPC3-202ENST00000394299 KRTAP1-5Q9BYS1 174 aa9.86□□□□□ -0.83
GPC3-202ENST00000394299 PRKDCP78527 4128 aaKnown RBP9.86□□□□□ -0.83
GPC3-202ENST00000394299 C14orf132Q9NPU4 83 aa9.85□□□□□ -0.83
GPC3-202ENST00000394299 SNCGO76070 127 aa9.85□□□□□ -0.83
GPC3-202ENST00000394299 TTC32Q5I0X7 151 aa9.85□□□□□ -0.83
GPC3-202ENST00000394299 B9D2Q9BPU9 175 aa9.85□□□□□ -0.83
GPC3-202ENST00000394299 ORMDL1Q9P0S3 153 aa9.85□□□□□ -0.83
GPC3-202ENST00000394299 LINC00575Q6W349 94 aa9.84□□□□□ -0.83
GPC3-202ENST00000394299 UPK3BQ9BT76 320 aa9.84□□□□□ -0.83
GPC3-202ENST00000394299 DYNC2H1Q8NCM8 4307 aaKnown RBP9.84□□□□□ -0.83
GPC3-202ENST00000394299 SMIM20Q8N5G0 67 aa9.83□□□□□ -0.84
GPC3-202ENST00000394299 TRAV23DV6A0A075B6W5 121 aa9.83□□□□□ -0.84
GPC3-202ENST00000394299 LINC00167Q96N53 147 aa9.82□□□□□ -0.84
GPC3-202ENST00000394299 SERTAD4-AS1Q5TG53 156 aa9.82□□□□□ -0.84
GPC3-202ENST00000394299 APLNQ9ULZ1 77 aa9.82□□□□□ -0.84
GPC3-202ENST00000394299 GAGE2AQ6NT46 116 aa9.81□□□□□ -0.84
GPC3-202ENST00000394299 hADV29S1A0JD25 119 aa9.8□□□□□ -0.84
GPC3-202ENST00000394299 SMCR5Q8TEV8 140 aa9.8□□□□□ -0.84
GPC3-202ENST00000394299 FAM168BA1KXE4 195 aa9.8□□□□□ -0.84
GPC3-202ENST00000394299 ZNF73O43830 326 aaPredicted RBP9.8□□□□□ -0.84
GPC3-202ENST00000394299 FAM240AA0A1B0GVK7 77 aa9.79□□□□□ -0.84
GPC3-202ENST00000394299 M0R378 163 aa9.79□□□□□ -0.84
GPC3-202ENST00000394299 Q6Q795 121 aa9.79□□□□□ -0.84
GPC3-202ENST00000394299 OBSCN-AS1Q96MR7 158 aa9.79□□□□□ -0.84
GPC3-202ENST00000394299 STARD9Q9P2P6 4700 aa9.79□□□□□ -0.84
GPC3-202ENST00000394299 A0A1B0GX51 115 aa9.79□□□□□ -0.84
GPC3-202ENST00000394299 UBE2DNLQ8IWF7 75 aa9.79□□□□□ -0.84
GPC3-202ENST00000394299 DIRC1Q969H9 104 aa9.79□□□□□ -0.84
GPC3-202ENST00000394299 INAFM2P0DMQ5 153 aa9.78□□□□□ -0.84
GPC3-202ENST00000394299 RMI2Q96E14 147 aa9.77□□□□□ -0.85
GPC3-202ENST00000394299 F8WDY8 70 aa9.77□□□□□ -0.85
GPC3-202ENST00000394299 Q6ZQY7 126 aa9.77□□□□□ -0.85
GPC3-202ENST00000394299 MEGF8Q7Z7M0 2845 aa9.76□□□□□ -0.85
GPC3-202ENST00000394299 TMEM256-PLSCR3K7ERE1 68 aa9.75□□□□□ -0.85
GPC3-202ENST00000394299 COX7BP24311 80 aa9.75□□□□□ -0.85
GPC3-202ENST00000394299 KRTAP7-1Q8IUC3 87 aa9.75□□□□□ -0.85
GPC3-202ENST00000394299 RPL37AP8A6NKH3 93 aa9.74□□□□□ -0.85
GPC3-202ENST00000394299 C7orf33Q8WU49 177 aa9.74□□□□□ -0.85
GPC3-202ENST00000394299 TLX1NBP0CAT3 122 aa9.73□□□□□ -0.85
GPC3-202ENST00000394299 ELOF1P60002 83 aaKnown RBP9.73□□□□□ -0.85
GPC3-202ENST00000394299 NKAPP1Q8N9T2 125 aa9.73□□□□□ -0.85
GPC3-202ENST00000394299 ACYP1P07311 99 aa9.73□□□□□ -0.85
GPC3-202ENST00000394299 PSCAO43653 123 aa9.71□□□□□ -0.85
GPC3-202ENST00000394299 LINC00846Q9NV44 126 aa9.71□□□□□ -0.86
GPC3-202ENST00000394299 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.7□□□□□ -0.86
GPC3-202ENST00000394299 FAM19A5Q7Z5A7 132 aaPredicted RBP9.7□□□□□ -0.86
GPC3-202ENST00000394299 LAMTOR3Q9UHA4 124 aa9.7□□□□□ -0.86
GPC3-202ENST00000394299 SDIM1Q6ZPB5 146 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms