RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CD164Q04900 197 aa8.23□□□□□ -1.09
SYNPO-202ENST00000394243 TRAV22A0A0B4J277 110 aa8.23□□□□□ -1.09
SYNPO-202ENST00000394243 IGLV5-45A0A087WSX0 123 aa8.22□□□□□ -1.09
SYNPO-202ENST00000394243 LY6G6DO95868 133 aa8.22□□□□□ -1.09
SYNPO-202ENST00000394243 ELOF1P60002 83 aaKnown RBP8.21□□□□□ -1.09
SYNPO-202ENST00000394243 MUC22E2RYF6 1773 aaPredicted RBP8.21□□□□□ -1.1
SYNPO-202ENST00000394243 CDSNQ15517 529 aa8.21□□□□□ -1.1
SYNPO-202ENST00000394243 RPL37AP61513 92 aaKnown RBP8.21□□□□□ -1.1
SYNPO-202ENST00000394243 A0A1B0GW54 56 aa8.2□□□□□ -1.1
SYNPO-202ENST00000394243 IGLV5-52A0A0A0MRZ9 124 aa8.2□□□□□ -1.1
SYNPO-202ENST00000394243 CYP4F30PQ9H0H9 118 aa8.2□□□□□ -1.1
SYNPO-202ENST00000394243 Q8NBF4 154 aa8.2□□□□□ -1.1
SYNPO-202ENST00000394243 FN1P02751 2386 aaKnown RBP8.19□□□□□ -1.1
SYNPO-202ENST00000394243 CCDC168Q8NDH2 2452 aa8.19□□□□□ -1.1
SYNPO-202ENST00000394243 LINC00167Q96N53 147 aa8.19□□□□□ -1.1
SYNPO-202ENST00000394243 SSBP3-AS1Q7Z2R9 100 aa8.19□□□□□ -1.1
SYNPO-202ENST00000394243 LINC00476Q8WZB0 136 aa8.19□□□□□ -1.1
SYNPO-202ENST00000394243 COA5Q86WW8 74 aa8.18□□□□□ -1.1
SYNPO-202ENST00000394243 ZNF462Q96JM2 2506 aa8.18□□□□□ -1.1
SYNPO-202ENST00000394243 COL4A4P53420 1690 aaPredicted RBP8.17□□□□□ -1.1
SYNPO-202ENST00000394243 ERC2-IT1O76042 136 aa8.17□□□□□ -1.1
SYNPO-202ENST00000394243 PIEZO2Q9H5I5 2752 aa8.17□□□□□ -1.1
SYNPO-202ENST00000394243 TRBV7-4A0A0J9YYF1 115 aa8.16□□□□□ -1.1
SYNPO-202ENST00000394243 MOBPQ13875 183 aa8.16□□□□□ -1.1
SYNPO-202ENST00000394243 NAV2Q8IVL1 2488 aa8.16□□□□□ -1.1
SYNPO-202ENST00000394243 TTC28Q96AY4 2481 aa8.16□□□□□ -1.1
SYNPO-202ENST00000394243 WDR87Q6ZQQ6 2873 aa8.15□□□□□ -1.1
SYNPO-202ENST00000394243 LITAFQ99732 161 aa8.15□□□□□ -1.1
SYNPO-202ENST00000394243 NUPR2A6NF83 97 aa8.15□□□□□ -1.1
SYNPO-202ENST00000394243 PCNTO95613 3336 aa8.14□□□□□ -1.11
SYNPO-202ENST00000394243 KTN1-AS1Q86SY8 53 aa8.14□□□□□ -1.11
SYNPO-202ENST00000394243 ST20-AS1Q8NBB2 130 aa8.13□□□□□ -1.11
SYNPO-202ENST00000394243 LINC01600Q96MT4 127 aa8.13□□□□□ -1.11
SYNPO-202ENST00000394243 KLKP1Q107X0 134 aa8.13□□□□□ -1.11
SYNPO-202ENST00000394243 K7EQZ3 153 aa8.12□□□□□ -1.11
SYNPO-202ENST00000394243 LOC101927531A0A1B0GV80 90 aa8.12□□□□□ -1.11
SYNPO-202ENST00000394243 Q6ZRX8 168 aa8.12□□□□□ -1.11
SYNPO-202ENST00000394243 SPACA4Q8TDM5 124 aa8.12□□□□□ -1.11
SYNPO-202ENST00000394243 H7BZZ5 65 aa8.11□□□□□ -1.11
SYNPO-202ENST00000394243 UQCR11O14957 56 aa8.1□□□□□ -1.11
SYNPO-202ENST00000394243 LCA10Q71F78 164 aa8.1□□□□□ -1.11
SYNPO-202ENST00000394243 LINC00313P59037 77 aa8.09□□□□□ -1.11
SYNPO-202ENST00000394243 SMR3AQ99954 134 aa8.08□□□□□ -1.12
SYNPO-202ENST00000394243 MIR22HGQ0VDD5 57 aa8.07□□□□□ -1.12
SYNPO-202ENST00000394243 A8MWP4 228 aa8.06□□□□□ -1.12
SYNPO-202ENST00000394243 A0A1W2PPR1 153 aa8.05□□□□□ -1.12
SYNPO-202ENST00000394243 PHF5AQ7RTV0 110 aaKnown RBP8.05□□□□□ -1.12
SYNPO-202ENST00000394243 C16orf95Q9H693 158 aa8.04□□□□□ -1.12
SYNPO-202ENST00000394243 IGLV6-57P01721 117 aa8.04□□□□□ -1.12
SYNPO-202ENST00000394243 EPM2AB3EWF7 344 aa8.04□□□□□ -1.12
SYNPO-202ENST00000394243 EIF4EBP3O60516 100 aaPredicted RBP8.04□□□□□ -1.12
SYNPO-202ENST00000394243 COL27A1Q8IZC6 1860 aaPredicted RBP8.04□□□□□ -1.12
SYNPO-202ENST00000394243 CENPFP49454 3210 aa8.03□□□□□ -1.12
SYNPO-202ENST00000394243 KRTAP10-9P60411 292 aa8.02□□□□□ -1.13
SYNPO-202ENST00000394243 TLN2Q9Y4G6 2542 aa8.02□□□□□ -1.13
SYNPO-202ENST00000394243 C1orf134Q5TEV5 83 aa8.02□□□□□ -1.13
SYNPO-202ENST00000394243 MRPL34Q9BQ48 92 aaKnown RBP8.01□□□□□ -1.13
SYNPO-202ENST00000394243 CHTF8P0CG12 524 aa8□□□□□ -1.13
SYNPO-202ENST00000394243 PRR15Q8IV56 129 aa8□□□□□ -1.13
SYNPO-202ENST00000394243 CRIPTQ9P021 101 aa8□□□□□ -1.13
SYNPO-202ENST00000394243 Q6ZRP5 223 aa7.98□□□□□ -1.13
SYNPO-202ENST00000394243 SETD2Q9BYW2 2564 aaPredicted RBP7.98□□□□□ -1.13
SYNPO-202ENST00000394243 J3QL48 77 aa7.97□□□□□ -1.13
SYNPO-202ENST00000394243 C10orf142B7Z368 130 aa7.97□□□□□ -1.13
SYNPO-202ENST00000394243 WIPF1O43516 503 aa7.97□□□□□ -1.13
SYNPO-202ENST00000394243 ABCA12Q86UK0 2595 aa7.97□□□□□ -1.13
SYNPO-202ENST00000394243 LRRK2Q5S007 2527 aa7.97□□□□□ -1.13
SYNPO-202ENST00000394243 Q96NJ1 140 aa7.97□□□□□ -1.13
SYNPO-202ENST00000394243 PKD1L2Q7Z442 2459 aa7.96□□□□□ -1.13
SYNPO-202ENST00000394243 APLNQ9ULZ1 77 aa7.96□□□□□ -1.13
SYNPO-202ENST00000394243 FAM229AH3BQW9 127 aa7.96□□□□□ -1.14
SYNPO-202ENST00000394243 FAM168BA1KXE4 195 aa7.96□□□□□ -1.14
SYNPO-202ENST00000394243 GVQW2A0A096LPI5 108 aaPredicted RBP7.96□□□□□ -1.14
SYNPO-202ENST00000394243 TLN1Q9Y490 2541 aaKnown RBP7.95□□□□□ -1.14
SYNPO-202ENST00000394243 C9orf129Q5T035 196 aaKnown RBP7.94□□□□□ -1.14
SYNPO-202ENST00000394243 ZFYVE26Q68DK2 2539 aa7.94□□□□□ -1.14
SYNPO-202ENST00000394243 C16orf90A8MZG2 172 aa7.94□□□□□ -1.14
SYNPO-202ENST00000394243 F8P00451 2351 aa7.94□□□□□ -1.14
SYNPO-202ENST00000394243 IGF2RP11717 2491 aa7.93□□□□□ -1.14
SYNPO-202ENST00000394243 IGFL1Q6UW32 110 aa7.93□□□□□ -1.14
SYNPO-202ENST00000394243 CDC42SE1Q9NRR8 79 aa7.93□□□□□ -1.14
SYNPO-202ENST00000394243 LINC00528Q8N1L1 170 aa7.92□□□□□ -1.14
SYNPO-202ENST00000394243 USP9XQ93008 2570 aaPredicted RBP7.92□□□□□ -1.14
SYNPO-202ENST00000394243 JMJD1CQ15652 2540 aa7.91□□□□□ -1.14
SYNPO-202ENST00000394243 C8orf17Q9NRJ1 99 aa7.91□□□□□ -1.14
SYNPO-202ENST00000394243 H3BNG1 76 aa7.89□□□□□ -1.15
SYNPO-202ENST00000394243 Q8N377 158 aa7.89□□□□□ -1.15
SYNPO-202ENST00000394243 TYMSOSQ8TAI1 123 aa7.89□□□□□ -1.15
SYNPO-202ENST00000394243 KCNQ1DNQ9H478 68 aa7.89□□□□□ -1.15
SYNPO-202ENST00000394243 A0A0G2JQZ4 141 aa7.88□□□□□ -1.15
SYNPO-202ENST00000394243 A0A1W2PNN7 141 aa7.88□□□□□ -1.15
SYNPO-202ENST00000394243 IGLV1-50A0A075B6I6 118 aa7.88□□□□□ -1.15
SYNPO-202ENST00000394243 DSCR10P59022 87 aa7.88□□□□□ -1.15
SYNPO-202ENST00000394243 RBM12B-AS1Q9P1G2 102 aa7.88□□□□□ -1.15
SYNPO-202ENST00000394243 Q1T7F1 81 aa7.86□□□□□ -1.15
SYNPO-202ENST00000394243 SPANXA2-OT1Q8N9U9 137 aa7.86□□□□□ -1.15
SYNPO-202ENST00000394243 A0A1B0GVX0 72 aa7.85□□□□□ -1.15
SYNPO-202ENST00000394243 H3BS24 57 aa7.84□□□□□ -1.15
SYNPO-202ENST00000394243 COX6B2Q6YFQ2 88 aa7.84□□□□□ -1.16
SYNPO-202ENST00000394243 RTL8CO15255 209 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms