RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TYMSOSQ8TAI1 123 aa8.85□□□□□ -0.99
CCDC88C-204ENST00000389857 TRAV22A0A0B4J277 110 aa8.84□□□□□ -1
CCDC88C-204ENST00000389857 A0A1W2PPR1 153 aa8.84□□□□□ -1
CCDC88C-204ENST00000389857 Q6ZRP5 223 aa8.84□□□□□ -1
CCDC88C-204ENST00000389857 CDIP1Q9H305 208 aa8.83□□□□□ -1
CCDC88C-204ENST00000389857 LOC110117498A0A087WWA1 95 aa8.83□□□□□ -1
CCDC88C-204ENST00000389857 CUL9Q8IWT3 2517 aa8.83□□□□□ -1
CCDC88C-204ENST00000389857 RTL8CO15255 209 aa8.83□□□□□ -1
CCDC88C-204ENST00000389857 LINC00476Q8WZB0 136 aa8.82□□□□□ -1
CCDC88C-204ENST00000389857 Q6ZRX8 168 aa8.82□□□□□ -1
CCDC88C-204ENST00000389857 FAM19A4Q96LR4 140 aa8.82□□□□□ -1
CCDC88C-204ENST00000389857 PHF5AQ7RTV0 110 aaKnown RBP8.81□□□□□ -1
CCDC88C-204ENST00000389857 C16orf90A8MZG2 172 aa8.81□□□□□ -1
CCDC88C-204ENST00000389857 C8orf87E5RJ46 101 aa8.81□□□□□ -1
CCDC88C-204ENST00000389857 ATP11AUNQ6ZP68 121 aa8.81□□□□□ -1
CCDC88C-204ENST00000389857 Q6ZQT0 140 aa8.81□□□□□ -1
CCDC88C-204ENST00000389857 IGLV5-45A0A087WSX0 123 aa8.8□□□□□ -1
CCDC88C-204ENST00000389857 SPINT4Q6UDR6 99 aa8.8□□□□□ -1
CCDC88C-204ENST00000389857 EPM2AB3EWF7 344 aa8.79□□□□□ -1
CCDC88C-204ENST00000389857 J3QL48 77 aa8.78□□□□□ -1
CCDC88C-204ENST00000389857 Q96NJ1 140 aa8.78□□□□□ -1
CCDC88C-204ENST00000389857 CHTF8P0CG12 524 aa8.78□□□□□ -1
CCDC88C-204ENST00000389857 LINC00315P59091 139 aa8.77□□□□□ -1
CCDC88C-204ENST00000389857 CACNA1AO00555 2505 aa8.76□□□□□ -1.01
CCDC88C-204ENST00000389857 RPS28P62857 69 aaKnown RBP8.76□□□□□ -1.01
CCDC88C-204ENST00000389857 NBDYA0A0U1RRE5 68 aa8.76□□□□□ -1.01
CCDC88C-204ENST00000389857 LOC101927531A0A1B0GV80 90 aa8.76□□□□□ -1.01
CCDC88C-204ENST00000389857 FAM218AQ96MZ4 157 aa8.75□□□□□ -1.01
CCDC88C-204ENST00000389857 MYO18BQ8IUG5 2567 aa8.74□□□□□ -1.01
CCDC88C-204ENST00000389857 IGLV8-61A0A075B6I0 122 aa8.74□□□□□ -1.01
CCDC88C-204ENST00000389857 GVQW2A0A096LPI5 108 aaPredicted RBP8.74□□□□□ -1.01
CCDC88C-204ENST00000389857 TRBV7-4A0A0J9YYF1 115 aa8.72□□□□□ -1.01
CCDC88C-204ENST00000389857 C4orf26Q17RF5 130 aa8.72□□□□□ -1.01
CCDC88C-204ENST00000389857 RPL37AP61513 92 aaKnown RBP8.71□□□□□ -1.01
CCDC88C-204ENST00000389857 VPREB1P12018 145 aa8.71□□□□□ -1.01
CCDC88C-204ENST00000389857 A8MWP4 228 aa8.71□□□□□ -1.02
CCDC88C-204ENST00000389857 ST20-AS1Q8NBB2 130 aa8.7□□□□□ -1.02
CCDC88C-204ENST00000389857 LINC00588Q9Y4M8 146 aa8.69□□□□□ -1.02
CCDC88C-204ENST00000389857 SMCPP49901 116 aaPredicted RBP8.69□□□□□ -1.02
CCDC88C-204ENST00000389857 TM2D3Q9BRN9 247 aa8.68□□□□□ -1.02
CCDC88C-204ENST00000389857 COL4A2P08572 1712 aa8.68□□□□□ -1.02
CCDC88C-204ENST00000389857 NAV2Q8IVL1 2488 aa8.68□□□□□ -1.02
CCDC88C-204ENST00000389857 MRPL34Q9BQ48 92 aaKnown RBP8.67□□□□□ -1.02
CCDC88C-204ENST00000389857 SSBP3-AS1Q7Z2R9 100 aa8.66□□□□□ -1.02
CCDC88C-204ENST00000389857 Q8NAQ8 132 aa8.66□□□□□ -1.02
CCDC88C-204ENST00000389857 PIEZO1Q92508 2521 aa8.66□□□□□ -1.02
CCDC88C-204ENST00000389857 UTRNP46939 3433 aa8.66□□□□□ -1.02
CCDC88C-204ENST00000389857 CEP350Q5VT06 3117 aa8.65□□□□□ -1.02
CCDC88C-204ENST00000389857 DNAH10OSP0CZ25 163 aa8.65□□□□□ -1.03
CCDC88C-204ENST00000389857 DNAH12Q6ZR08 3092 aa8.65□□□□□ -1.03
CCDC88C-204ENST00000389857 IGLV6-57P01721 117 aa8.64□□□□□ -1.03
CCDC88C-204ENST00000389857 LINC01600Q96MT4 127 aa8.64□□□□□ -1.03
CCDC88C-204ENST00000389857 ERC2-IT1O76042 136 aa8.64□□□□□ -1.03
CCDC88C-204ENST00000389857 C2CD3Q4AC94 2353 aa8.64□□□□□ -1.03
CCDC88C-204ENST00000389857 PRO0461Q9UI25 63 aa8.64□□□□□ -1.03
CCDC88C-204ENST00000389857 COX6B2Q6YFQ2 88 aa8.64□□□□□ -1.03
CCDC88C-204ENST00000389857 CYP4F30PQ9H0H9 118 aa8.63□□□□□ -1.03
CCDC88C-204ENST00000389857 COA5Q86WW8 74 aa8.63□□□□□ -1.03
CCDC88C-204ENST00000389857 WWC2-AS2Q96NR7 200 aa8.63□□□□□ -1.03
CCDC88C-204ENST00000389857 UQCR11O14957 56 aa8.62□□□□□ -1.03
CCDC88C-204ENST00000389857 CRIPTQ9P021 101 aa8.62□□□□□ -1.03
CCDC88C-204ENST00000389857 KRTAP24-1Q3LI83 254 aa8.61□□□□□ -1.03
CCDC88C-204ENST00000389857 K7EQZ3 153 aa8.6□□□□□ -1.03
CCDC88C-204ENST00000389857 LRRK2Q5S007 2527 aa8.6□□□□□ -1.03
CCDC88C-204ENST00000389857 APLNQ9ULZ1 77 aa8.6□□□□□ -1.03
CCDC88C-204ENST00000389857 FAM168BA1KXE4 195 aa8.6□□□□□ -1.03
CCDC88C-204ENST00000389857 PCSK5Q92824 1860 aa8.59□□□□□ -1.03
CCDC88C-204ENST00000389857 BPTFQ12830 3046 aa8.59□□□□□ -1.03
CCDC88C-204ENST00000389857 IGLV1-50A0A075B6I6 118 aa8.58□□□□□ -1.04
CCDC88C-204ENST00000389857 LINC00304Q8N9R0 145 aa8.56□□□□□ -1.04
CCDC88C-204ENST00000389857 KCNQ1DNQ9H478 68 aa8.56□□□□□ -1.04
CCDC88C-204ENST00000389857 ZFYVE26Q68DK2 2539 aa8.55□□□□□ -1.04
CCDC88C-204ENST00000389857 MIR22HGQ0VDD5 57 aa8.55□□□□□ -1.04
CCDC88C-204ENST00000389857 DSCR10P59022 87 aa8.55□□□□□ -1.04
CCDC88C-204ENST00000389857 C8orf17Q9NRJ1 99 aa8.53□□□□□ -1.04
CCDC88C-204ENST00000389857 PIEZO2Q9H5I5 2752 aa8.53□□□□□ -1.04
CCDC88C-204ENST00000389857 LITAFQ99732 161 aa8.53□□□□□ -1.04
CCDC88C-204ENST00000389857 MYO9AB2RTY4 2548 aa8.52□□□□□ -1.04
CCDC88C-204ENST00000389857 IGFL1Q6UW32 110 aa8.52□□□□□ -1.05
CCDC88C-204ENST00000389857 A0A1B0GVX0 72 aa8.52□□□□□ -1.05
CCDC88C-204ENST00000389857 IGF2RP11717 2491 aa8.52□□□□□ -1.05
CCDC88C-204ENST00000389857 WDR87Q6ZQQ6 2873 aa8.52□□□□□ -1.05
CCDC88C-204ENST00000389857 PRR15Q8IV56 129 aa8.51□□□□□ -1.05
CCDC88C-204ENST00000389857 A8MUN3 132 aa8.51□□□□□ -1.05
CCDC88C-204ENST00000389857 OBSCN-AS1Q96MR7 158 aa8.51□□□□□ -1.05
CCDC88C-204ENST00000389857 PCNTO95613 3336 aa8.5□□□□□ -1.05
CCDC88C-204ENST00000389857 ZNF861PO60384 105 aa8.5□□□□□ -1.05
CCDC88C-204ENST00000389857 NCOR2Q9Y618 2525 aa8.5□□□□□ -1.05
CCDC88C-204ENST00000389857 RBM12B-AS1Q9P1G2 102 aa8.49□□□□□ -1.05
CCDC88C-204ENST00000389857 C9orf92A6NGG3 77 aa8.49□□□□□ -1.05
CCDC88C-204ENST00000389857 LINC00528Q8N1L1 170 aa8.48□□□□□ -1.05
CCDC88C-204ENST00000389857 KLK9Q2XQG4 91 aa8.47□□□□□ -1.05
CCDC88C-204ENST00000389857 TLN1Q9Y490 2541 aaKnown RBP8.46□□□□□ -1.06
CCDC88C-204ENST00000389857 IGLV5-37A0A075B6J1 123 aa8.45□□□□□ -1.06
CCDC88C-204ENST00000389857 PLA2G2DQ9UNK4 145 aa8.45□□□□□ -1.06
CCDC88C-204ENST00000389857 CSNK1G2-AS1Q8NCQ2 148 aa8.45□□□□□ -1.06
CCDC88C-204ENST00000389857 CENPFP49454 3210 aa8.44□□□□□ -1.06
CCDC88C-204ENST00000389857 C15orf56Q8N910 161 aa8.43□□□□□ -1.06
CCDC88C-204ENST00000389857 F8P00451 2351 aa8.43□□□□□ -1.06
CCDC88C-204ENST00000389857 HTTP42858 3142 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms