RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 KLK5Q9Y337 293 aaPredicted RBP13.24□□□□□ -0.29
SHROOM1-202ENST00000378676 LOC107984640A0A0U1RRK4 108 aa13.23□□□□□ -0.29
SHROOM1-202ENST00000378676 LINC00167Q96N53 147 aa13.23□□□□□ -0.29
SHROOM1-202ENST00000378676 IGHV4-30-4P0DP06 118 aa13.23□□□□□ -0.29
SHROOM1-202ENST00000378676 UNQ6190/PRO20217Q6UXQ8 127 aa13.23□□□□□ -0.29
SHROOM1-202ENST00000378676 SPAG11BQ08648 103 aa13.22□□□□□ -0.29
SHROOM1-202ENST00000378676 KLK12Q9UKR0 248 aa13.21□□□□□ -0.29
SHROOM1-202ENST00000378676 FAM19A5Q7Z5A7 132 aaPredicted RBP13.2□□□□□ -0.3
SHROOM1-202ENST00000378676 Q8N814 137 aa13.2□□□□□ -0.3
SHROOM1-202ENST00000378676 LINC00846Q9NV44 126 aa13.19□□□□□ -0.3
SHROOM1-202ENST00000378676 PRR34Q9NV39 138 aa13.18□□□□□ -0.3
SHROOM1-202ENST00000378676 ENHOQ6UWT2 76 aa13.18□□□□□ -0.3
SHROOM1-202ENST00000378676 C6orf99Q4VX62 202 aa13.17□□□□□ -0.3
SHROOM1-202ENST00000378676 CYSRT1A8MQ03 144 aa13.17□□□□□ -0.3
SHROOM1-202ENST00000378676 WFDC9Q8NEX5 89 aa13.16□□□□□ -0.3
SHROOM1-202ENST00000378676 RPL18AQ02543 176 aaKnown RBP13.15□□□□□ -0.3
SHROOM1-202ENST00000378676 S100A7L2Q5SY68 101 aa13.14□□□□□ -0.31
SHROOM1-202ENST00000378676 LYPD5Q6UWN5 251 aa13.14□□□□□ -0.31
SHROOM1-202ENST00000378676 A0A0J9YWU9 116 aa13.14□□□□□ -0.31
SHROOM1-202ENST00000378676 WIPF1O43516 503 aa13.14□□□□□ -0.31
SHROOM1-202ENST00000378676 TMEM258P61165 79 aa13.13□□□□□ -0.31
SHROOM1-202ENST00000378676 RETNQ9HD89 108 aa13.13□□□□□ -0.31
SHROOM1-202ENST00000378676 hADV29S1A0JD25 119 aa13.13□□□□□ -0.31
SHROOM1-202ENST00000378676 IGKV3D-7A0A0C4DH55 119 aa13.12□□□□□ -0.31
SHROOM1-202ENST00000378676 Q6JHZ5 121 aa13.12□□□□□ -0.31
SHROOM1-202ENST00000378676 CCKP06307 115 aa13.1□□□□□ -0.31
SHROOM1-202ENST00000378676 C6orf48Q9UBA6 75 aa13.1□□□□□ -0.31
SHROOM1-202ENST00000378676 SERP2Q8N6R1 65 aa13.1□□□□□ -0.31
SHROOM1-202ENST00000378676 TMEM256-PLSCR3K7ERE1 68 aa13.09□□□□□ -0.31
SHROOM1-202ENST00000378676 LINC00575Q6W349 94 aa13.09□□□□□ -0.31
SHROOM1-202ENST00000378676 WFDC10BQ8IUB3 73 aa13.09□□□□□ -0.31
SHROOM1-202ENST00000378676 JMJD7-PLA2G4BH0Y9G9 81 aa13.08□□□□□ -0.32
SHROOM1-202ENST00000378676 MUC7Q8TAX7 377 aa13.08□□□□□ -0.32
SHROOM1-202ENST00000378676 IGLV6-57P01721 117 aa13.07□□□□□ -0.32
SHROOM1-202ENST00000378676 DPH3Q96FX2 82 aa13.07□□□□□ -0.32
SHROOM1-202ENST00000378676 GVQW2A0A096LPI5 108 aaPredicted RBP13.07□□□□□ -0.32
SHROOM1-202ENST00000378676 UPK3BQ9BT76 320 aa13.07□□□□□ -0.32
SHROOM1-202ENST00000378676 OXLD1Q5BKU9 147 aa13.06□□□□□ -0.32
SHROOM1-202ENST00000378676 PKD1L1Q8TDX9 2849 aa13.06□□□□□ -0.32
SHROOM1-202ENST00000378676 XAGE1AQ9HD64 81 aa13.06□□□□□ -0.32
SHROOM1-202ENST00000378676 KPRPQ5T749 579 aaPredicted RBP13.05□□□□□ -0.32
SHROOM1-202ENST00000378676 CYSTM1Q9H1C7 97 aa13.05□□□□□ -0.32
SHROOM1-202ENST00000378676 KRTAP10-11P60412 298 aa13.05□□□□□ -0.32
SHROOM1-202ENST00000378676 A0A087WVE0 104 aa13.04□□□□□ -0.32
SHROOM1-202ENST00000378676 HIGD2BQ4VC39 106 aa13.04□□□□□ -0.32
SHROOM1-202ENST00000378676 TRBV10-3A0A0K0K1G6 114 aa13.03□□□□□ -0.32
SHROOM1-202ENST00000378676 Q6ZTC4 211 aa13.03□□□□□ -0.32
SHROOM1-202ENST00000378676 KRTAP26-1Q6PEX3 210 aa13.02□□□□□ -0.32
SHROOM1-202ENST00000378676 TENM3Q9P273 2699 aa13.02□□□□□ -0.32
SHROOM1-202ENST00000378676 USP17L23D6RBM5 183 aa13□□□□□ -0.33
SHROOM1-202ENST00000378676 KRTAP24-1Q3LI83 254 aa13□□□□□ -0.33
SHROOM1-202ENST00000378676 TRAV23DV6A0A075B6W5 121 aa12.99□□□□□ -0.33
SHROOM1-202ENST00000378676 H3BNG1 76 aa12.98□□□□□ -0.33
SHROOM1-202ENST00000378676 CAMK2N2Q96S95 79 aa12.98□□□□□ -0.33
SHROOM1-202ENST00000378676 ZNF561-AS1K7EIQ3 104 aa12.98□□□□□ -0.33
SHROOM1-202ENST00000378676 Q6ZQY7 126 aa12.98□□□□□ -0.33
SHROOM1-202ENST00000378676 C15orf56Q8N910 161 aa12.97□□□□□ -0.33
SHROOM1-202ENST00000378676 CMYA5Q8N3K9 4069 aa12.97□□□□□ -0.33
SHROOM1-202ENST00000378676 Q6ZQT0 140 aa12.96□□□□□ -0.33
SHROOM1-202ENST00000378676 Q6ZRU5 148 aa12.96□□□□□ -0.33
SHROOM1-202ENST00000378676 ANK2Q01484 3957 aa12.96□□□□□ -0.34
SHROOM1-202ENST00000378676 ESRGQ1W209 222 aa12.95□□□□□ -0.34
SHROOM1-202ENST00000378676 DIRC1Q969H9 104 aa12.95□□□□□ -0.34
SHROOM1-202ENST00000378676 M0R2N4 97 aa12.95□□□□□ -0.34
SHROOM1-202ENST00000378676 VPREB1P12018 145 aa12.94□□□□□ -0.34
SHROOM1-202ENST00000378676 RBM3P98179 157 aaKnown RBP12.94□□□□□ -0.34
SHROOM1-202ENST00000378676 LAMTOR3Q9UHA4 124 aa12.94□□□□□ -0.34
SHROOM1-202ENST00000378676 NDUFC2-KCTD14E9PQ53 114 aa12.94□□□□□ -0.34
SHROOM1-202ENST00000378676 OXTP01178 125 aa12.94□□□□□ -0.34
SHROOM1-202ENST00000378676 DSCR8Q96T75 97 aa12.94□□□□□ -0.34
SHROOM1-202ENST00000378676 ZNF73O43830 326 aaPredicted RBP12.93□□□□□ -0.34
SHROOM1-202ENST00000378676 ATP5EP2Q5VTU8 51 aa12.92□□□□□ -0.34
SHROOM1-202ENST00000378676 EGFEM1PQ0D2K5 195 aa12.92□□□□□ -0.34
SHROOM1-202ENST00000378676 LOC110117498A0A087WWA1 95 aa12.91□□□□□ -0.34
SHROOM1-202ENST00000378676 COX7BP24311 80 aa12.9□□□□□ -0.34
SHROOM1-202ENST00000378676 FBN1P35555 2871 aaKnown RBP12.9□□□□□ -0.34
SHROOM1-202ENST00000378676 Q5XG85 94 aa12.89□□□□□ -0.35
SHROOM1-202ENST00000378676 ELOF1P60002 83 aaKnown RBP12.89□□□□□ -0.35
SHROOM1-202ENST00000378676 FAM19A1Q7Z5A9 133 aa12.89□□□□□ -0.35
SHROOM1-202ENST00000378676 MAST4O15021 2626 aa12.89□□□□□ -0.35
SHROOM1-202ENST00000378676 UBL5Q9BZL1 73 aa12.88□□□□□ -0.35
SHROOM1-202ENST00000378676 STAB1Q9NY15 2570 aa12.88□□□□□ -0.35
SHROOM1-202ENST00000378676 C1orf43Q9BWL3 253 aa12.87□□□□□ -0.35
SHROOM1-202ENST00000378676 DEFB131BA0A096LNP1 70 aa12.86□□□□□ -0.35
SHROOM1-202ENST00000378676 M0R378 163 aa12.86□□□□□ -0.35
SHROOM1-202ENST00000378676 C4orf26Q17RF5 130 aa12.86□□□□□ -0.35
SHROOM1-202ENST00000378676 IGKV2D-24A0A075B6R9 120 aa12.85□□□□□ -0.35
SHROOM1-202ENST00000378676 LINC01556Q5JQF7 62 aa12.85□□□□□ -0.35
SHROOM1-202ENST00000378676 Q6ZRP5 223 aa12.85□□□□□ -0.35
SHROOM1-202ENST00000378676 DNAH3Q8TD57 4116 aa12.85□□□□□ -0.35
SHROOM1-202ENST00000378676 GHRHP01286 108 aa12.85□□□□□ -0.35
SHROOM1-202ENST00000378676 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.85□□□□□ -0.35
SHROOM1-202ENST00000378676 TRBV7-6A0A0J9YX20 115 aa12.83□□□□□ -0.36
SHROOM1-202ENST00000378676 C11orf45Q8TAV5 145 aa12.82□□□□□ -0.36
SHROOM1-202ENST00000378676 HRCT1Q6UXD1 115 aa12.81□□□□□ -0.36
SHROOM1-202ENST00000378676 H3BQ85 93 aa12.81□□□□□ -0.36
SHROOM1-202ENST00000378676 LINC00528Q8N1L1 170 aa12.81□□□□□ -0.36
SHROOM1-202ENST00000378676 Q6ZVQ6 151 aa12.8□□□□□ -0.36
SHROOM1-202ENST00000378676 TRBV7-4A0A0J9YYF1 115 aa12.79□□□□□ -0.36
SHROOM1-202ENST00000378676 BCE1O60756 84 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms