RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 TMEM223A0PJW6 202 aa12.36□□□□□ -0.43
VSX1-201ENST00000376707 RPL24P83731 157 aaKnown RBP12.36□□□□□ -0.43
VSX1-201ENST00000376707 CBLN2Q8IUK8 224 aa12.36□□□□□ -0.43
VSX1-201ENST00000376707 HSBP1O75506 76 aa12.33□□□□□ -0.44
VSX1-201ENST00000376707 PRLHP81277 87 aa12.33□□□□□ -0.44
VSX1-201ENST00000376707 FAM229BQ4G0N7 80 aa12.33□□□□□ -0.44
VSX1-201ENST00000376707 KRTAP13-2Q52LG2 175 aa12.33□□□□□ -0.44
VSX1-201ENST00000376707 FAM19A1Q7Z5A9 133 aa12.33□□□□□ -0.44
VSX1-201ENST00000376707 Q8NDZ9 215 aa12.33□□□□□ -0.44
VSX1-201ENST00000376707 TMEM126AQ9H061 195 aa12.32□□□□□ -0.44
VSX1-201ENST00000376707 TMEM238C9JI98 176 aa12.31□□□□□ -0.44
VSX1-201ENST00000376707 FAM19A2Q8N3H0 131 aa12.31□□□□□ -0.44
VSX1-201ENST00000376707 TRGC2P03986 189 aa12.3□□□□□ -0.44
VSX1-201ENST00000376707 LINC00158P58513 81 aa12.3□□□□□ -0.44
VSX1-201ENST00000376707 IGKV2D-26A0A0A0MRZ7 120 aa12.29□□□□□ -0.44
VSX1-201ENST00000376707 M0R378 163 aa12.28□□□□□ -0.44
VSX1-201ENST00000376707 LINC00304Q8N9R0 145 aa12.28□□□□□ -0.44
VSX1-201ENST00000376707 LINC00310P59036 64 aa12.26□□□□□ -0.45
VSX1-201ENST00000376707 HERV-K104P63124 156 aa12.25□□□□□ -0.45
VSX1-201ENST00000376707 MUC2Q02817 5179 aa12.25□□□□□ -0.45
VSX1-201ENST00000376707 A0A0U1RRA0 63 aa12.24□□□□□ -0.45
VSX1-201ENST00000376707 SERF1AO75920 110 aa12.24□□□□□ -0.45
VSX1-201ENST00000376707 LEPROTL1O95214 131 aa12.24□□□□□ -0.45
VSX1-201ENST00000376707 SMIM13P0DJ93 91 aa12.24□□□□□ -0.45
VSX1-201ENST00000376707 RETNLBQ9BQ08 111 aa12.24□□□□□ -0.45
VSX1-201ENST00000376707 PLEKHB2Q96CS7 222 aa12.22□□□□□ -0.45
VSX1-201ENST00000376707 NDUFA12Q9UI09 145 aa12.22□□□□□ -0.45
VSX1-201ENST00000376707 A0A0U1RQV1 116 aa12.21□□□□□ -0.45
VSX1-201ENST00000376707 LINC00587B1AMM8 73 aa12.21□□□□□ -0.45
VSX1-201ENST00000376707 MEIG1Q5JSS6 88 aa12.21□□□□□ -0.45
VSX1-201ENST00000376707 SLC7A5P1Q8MH63 180 aa12.21□□□□□ -0.45
VSX1-201ENST00000376707 HIGD2AQ9BW72 106 aa12.21□□□□□ -0.45
VSX1-201ENST00000376707 H0Y8G0 127 aa12.2□□□□□ -0.46
VSX1-201ENST00000376707 ATP6V1G1O75348 118 aa12.2□□□□□ -0.46
VSX1-201ENST00000376707 MIR7-3HGQ8N6C7 128 aa12.2□□□□□ -0.46
VSX1-201ENST00000376707 MYMXA0A1B0GTQ4 84 aa12.19□□□□□ -0.46
VSX1-201ENST00000376707 COLCA2A8K830 154 aa12.19□□□□□ -0.46
VSX1-201ENST00000376707 PLNP26678 52 aa12.19□□□□□ -0.46
VSX1-201ENST00000376707 BOD1L2Q8IYS8 172 aa12.19□□□□□ -0.46
VSX1-201ENST00000376707 HSPB8Q9UJY1 196 aa12.19□□□□□ -0.46
VSX1-201ENST00000376707 TSPEAR-AS2P59090 65 aa12.17□□□□□ -0.46
VSX1-201ENST00000376707 LEPROTO15243 131 aa12.16□□□□□ -0.46
VSX1-201ENST00000376707 CTAG1AP78358 180 aa12.16□□□□□ -0.46
VSX1-201ENST00000376707 C3orf22Q8N5N4 141 aa12.16□□□□□ -0.46
VSX1-201ENST00000376707 MAP1LC3CQ9BXW4 147 aa12.16□□□□□ -0.46
VSX1-201ENST00000376707 PRYO14603 147 aa12.15□□□□□ -0.46
VSX1-201ENST00000376707 LOC107984156A0A0G2JMH3 177 aa12.14□□□□□ -0.47
VSX1-201ENST00000376707 DPM2O94777 84 aa12.14□□□□□ -0.47
VSX1-201ENST00000376707 SPRR1AP35321 89 aa12.14□□□□□ -0.47
VSX1-201ENST00000376707 ARL17AQ8IVW1 177 aa12.14□□□□□ -0.47
VSX1-201ENST00000376707 KCNQ1DNQ9H478 68 aa12.14□□□□□ -0.47
VSX1-201ENST00000376707 IGLV7-46A0A075B6I9 117 aa12.13□□□□□ -0.47
VSX1-201ENST00000376707 FABP4P15090 132 aa12.13□□□□□ -0.47
VSX1-201ENST00000376707 LINC00337Q8N6G1 96 aa12.13□□□□□ -0.47
VSX1-201ENST00000376707 SPRR4Q96PI1 79 aa12.13□□□□□ -0.47
VSX1-201ENST00000376707 CDIP1Q9H305 208 aa12.13□□□□□ -0.47
VSX1-201ENST00000376707 ZNF706Q9Y5V0 76 aaPredicted RBP12.13□□□□□ -0.47
VSX1-201ENST00000376707 J3QQQ9 107 aa12.12□□□□□ -0.47
VSX1-201ENST00000376707 NCR3O14931 201 aa12.12□□□□□ -0.47
VSX1-201ENST00000376707 KRTAP4-16G5E9R7 235 aaPredicted RBP12.11□□□□□ -0.47
VSX1-201ENST00000376707 NMUP48645 174 aa12.11□□□□□ -0.47
VSX1-201ENST00000376707 HERVK_113P61574 105 aa12.11□□□□□ -0.47
VSX1-201ENST00000376707 TPRXLQ17RH7 258 aa12.11□□□□□ -0.47
VSX1-201ENST00000376707 IGKCP01834 107 aa12.1□□□□□ -0.47
VSX1-201ENST00000376707 SPAG11AQ6PDA7 123 aa12.1□□□□□ -0.47
VSX1-201ENST00000376707 PMCHL2Q9BQD1 86 aa12.1□□□□□ -0.47
VSX1-201ENST00000376707 TRBV10-3A0A0K0K1G6 114 aa12.09□□□□□ -0.47
VSX1-201ENST00000376707 DAND5Q8N907 189 aa12.08□□□□□ -0.48
VSX1-201ENST00000376707 TRBV10-2A0A0K0K1G8 114 aa12.07□□□□□ -0.48
VSX1-201ENST00000376707 ETDCA0A1B0GVM5 59 aa12.07□□□□□ -0.48
VSX1-201ENST00000376707 C4orf48Q5BLP8 95 aa12.07□□□□□ -0.48
VSX1-201ENST00000376707 LGALS3P17931 250 aaKnown RBP12.06□□□□□ -0.48
VSX1-201ENST00000376707 S100A12P80511 92 aa12.05□□□□□ -0.48
VSX1-201ENST00000376707 SMCR5Q8TEV8 140 aa12.05□□□□□ -0.48
VSX1-201ENST00000376707 PPDPFQ9H3Y8 114 aa12.05□□□□□ -0.48
VSX1-201ENST00000376707 SPANXB1Q9NS25 103 aaPredicted RBP12.03□□□□□ -0.48
VSX1-201ENST00000376707 E9PLD3 99 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BKO60814 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 NDUFC2O95298 119 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BJP06899 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BOP23527 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BBP33778 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BDP58876 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BCP62807 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST2H2BEQ16778 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.02□□□□□ -0.49
VSX1-201ENST00000376707 Q8NBF4 154 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BHQ93079 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BNQ99877 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 HIST1H2BMQ99879 126 aa12.02□□□□□ -0.49
VSX1-201ENST00000376707 B5MCH6 92 aa12.01□□□□□ -0.49
VSX1-201ENST00000376707 DDTP30046 118 aa12.01□□□□□ -0.49
VSX1-201ENST00000376707 MIEN1Q9BRT3 115 aa12.01□□□□□ -0.49
VSX1-201ENST00000376707 SYS1-DBNDD2H3BUS1 97 aa12□□□□□ -0.49
VSX1-201ENST00000376707 A0A0J9YXY3 114 aa11.99□□□□□ -0.49
VSX1-201ENST00000376707 LINC00483Q53H64 154 aa11.99□□□□□ -0.49
VSX1-201ENST00000376707 FP248Q71RG6 208 aaPredicted RBP11.99□□□□□ -0.49
VSX1-201ENST00000376707 IGLV6-57P01721 117 aa11.98□□□□□ -0.49
VSX1-201ENST00000376707 ADAMTSL4-AS1Q5T5F5 129 aa11.97□□□□□ -0.49
VSX1-201ENST00000376707 SOSTDC1Q6X4U4 206 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms