RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 GVQW2A0A096LPI5 108 aaPredicted RBP13.98□□□□□ -0.17
CCDC88B-203ENST00000359902 SDIM1Q6ZPB5 146 aa13.98□□□□□ -0.17
CCDC88B-203ENST00000359902 LINC00167Q96N53 147 aa13.98□□□□□ -0.17
CCDC88B-203ENST00000359902 TRBV7-7A0A0K0K1E9 115 aa13.97□□□□□ -0.17
CCDC88B-203ENST00000359902 GAGE2AQ6NT46 116 aa13.97□□□□□ -0.17
CCDC88B-203ENST00000359902 ORMDL1Q9P0S3 153 aa13.97□□□□□ -0.17
CCDC88B-203ENST00000359902 PKD1L1Q8TDX9 2849 aa13.97□□□□□ -0.17
CCDC88B-203ENST00000359902 A0A1B0GX51 115 aa13.96□□□□□ -0.17
CCDC88B-203ENST00000359902 Q8N814 137 aa13.96□□□□□ -0.17
CCDC88B-203ENST00000359902 C6orf48Q9UBA6 75 aa13.96□□□□□ -0.18
CCDC88B-203ENST00000359902 ESRGQ1W209 222 aa13.95□□□□□ -0.18
CCDC88B-203ENST00000359902 S100A7L2Q5SY68 101 aa13.95□□□□□ -0.18
CCDC88B-203ENST00000359902 KRTAP26-1Q6PEX3 210 aa13.95□□□□□ -0.18
CCDC88B-203ENST00000359902 C14orf132Q9NPU4 83 aa13.95□□□□□ -0.18
CCDC88B-203ENST00000359902 CMYA5Q8N3K9 4069 aa13.95□□□□□ -0.18
CCDC88B-203ENST00000359902 ANK2Q01484 3957 aa13.95□□□□□ -0.18
CCDC88B-203ENST00000359902 C6orf99Q4VX62 202 aa13.94□□□□□ -0.18
CCDC88B-203ENST00000359902 STAB1Q9NY15 2570 aa13.94□□□□□ -0.18
CCDC88B-203ENST00000359902 LINC00643Q86TS7 51 aa13.93□□□□□ -0.18
CCDC88B-203ENST00000359902 FLNBO75369 2602 aaKnown RBP13.93□□□□□ -0.18
CCDC88B-203ENST00000359902 IMUPQ9GZP8 106 aa13.92□□□□□ -0.18
CCDC88B-203ENST00000359902 TENM3Q9P273 2699 aa13.91□□□□□ -0.18
CCDC88B-203ENST00000359902 DEFB131BA0A096LNP1 70 aa13.9□□□□□ -0.18
CCDC88B-203ENST00000359902 IGLV6-57P01721 117 aa13.9□□□□□ -0.18
CCDC88B-203ENST00000359902 RPL18AQ02543 176 aaKnown RBP13.9□□□□□ -0.18
CCDC88B-203ENST00000359902 HIGD2BQ4VC39 106 aa13.9□□□□□ -0.18
CCDC88B-203ENST00000359902 C11orf45Q8TAV5 145 aa13.9□□□□□ -0.18
CCDC88B-203ENST00000359902 ZNF561-AS1K7EIQ3 104 aa13.89□□□□□ -0.19
CCDC88B-203ENST00000359902 XAGE1AQ9HD64 81 aa13.88□□□□□ -0.19
CCDC88B-203ENST00000359902 LINC00575Q6W349 94 aa13.87□□□□□ -0.19
CCDC88B-203ENST00000359902 FAM236AA0A1B0GUQ0 79 aa13.86□□□□□ -0.19
CCDC88B-203ENST00000359902 FAM236BA0A1B0GV22 79 aa13.86□□□□□ -0.19
CCDC88B-203ENST00000359902 TMEM256-PLSCR3K7ERE1 68 aa13.86□□□□□ -0.19
CCDC88B-203ENST00000359902 CAMK2N2Q96S95 79 aa13.86□□□□□ -0.19
CCDC88B-203ENST00000359902 C15orf56Q8N910 161 aa13.86□□□□□ -0.19
CCDC88B-203ENST00000359902 LINC01556Q5JQF7 62 aa13.85□□□□□ -0.19
CCDC88B-203ENST00000359902 DNAH3Q8TD57 4116 aa13.84□□□□□ -0.19
CCDC88B-203ENST00000359902 Q6ZRU5 148 aa13.82□□□□□ -0.2
CCDC88B-203ENST00000359902 TRBV10-3A0A0K0K1G6 114 aa13.82□□□□□ -0.2
CCDC88B-203ENST00000359902 C1orf43Q9BWL3 253 aa13.82□□□□□ -0.2
CCDC88B-203ENST00000359902 hADV29S1A0JD25 119 aa13.81□□□□□ -0.2
CCDC88B-203ENST00000359902 JMJD7-PLA2G4BH0Y9G9 81 aa13.81□□□□□ -0.2
CCDC88B-203ENST00000359902 C2orf48Q96LS8 159 aa13.81□□□□□ -0.2
CCDC88B-203ENST00000359902 LINC00846Q9NV44 126 aa13.81□□□□□ -0.2
CCDC88B-203ENST00000359902 MAST4O15021 2626 aa13.8□□□□□ -0.2
CCDC88B-203ENST00000359902 CCKP06307 115 aa13.8□□□□□ -0.2
CCDC88B-203ENST00000359902 IGKV2D-24A0A075B6R9 120 aa13.78□□□□□ -0.2
CCDC88B-203ENST00000359902 TRAV23DV6A0A075B6W5 121 aa13.78□□□□□ -0.2
CCDC88B-203ENST00000359902 VPREB1P12018 145 aa13.78□□□□□ -0.2
CCDC88B-203ENST00000359902 C3orf22Q8N5N4 141 aa13.77□□□□□ -0.21
CCDC88B-203ENST00000359902 C9orf153Q5TBE3 101 aa13.76□□□□□ -0.21
CCDC88B-203ENST00000359902 NDUFC2-KCTD14E9PQ53 114 aa13.76□□□□□ -0.21
CCDC88B-203ENST00000359902 PRB2P02812 416 aaPredicted RBP13.76□□□□□ -0.21
CCDC88B-203ENST00000359902 DNAH10OSP0CZ25 163 aa13.76□□□□□ -0.21
CCDC88B-203ENST00000359902 UQCRQO14949 82 aa13.75□□□□□ -0.21
CCDC88B-203ENST00000359902 DIRC1Q969H9 104 aa13.75□□□□□ -0.21
CCDC88B-203ENST00000359902 NOTCH1P46531 2555 aa13.74□□□□□ -0.21
CCDC88B-203ENST00000359902 ZNF73O43830 326 aaPredicted RBP13.73□□□□□ -0.21
CCDC88B-203ENST00000359902 TRAV10A0A0B4J240 114 aa13.72□□□□□ -0.21
CCDC88B-203ENST00000359902 F8WDY8 70 aa13.72□□□□□ -0.21
CCDC88B-203ENST00000359902 M0R378 163 aa13.72□□□□□ -0.21
CCDC88B-203ENST00000359902 Q6JHZ5 121 aa13.71□□□□□ -0.21
CCDC88B-203ENST00000359902 Q6ZQY7 126 aa13.71□□□□□ -0.21
CCDC88B-203ENST00000359902 Q6ZRP5 223 aa13.71□□□□□ -0.21
CCDC88B-203ENST00000359902 TM2D3Q9BRN9 247 aa13.7□□□□□ -0.22
CCDC88B-203ENST00000359902 SYCNQ0VAF6 134 aa13.7□□□□□ -0.22
CCDC88B-203ENST00000359902 LINC00588Q9Y4M8 146 aa13.69□□□□□ -0.22
CCDC88B-203ENST00000359902 BAHCC1Q9P281 2608 aa13.69□□□□□ -0.22
CCDC88B-203ENST00000359902 COX7BP24311 80 aa13.69□□□□□ -0.22
CCDC88B-203ENST00000359902 IGKV3D-7A0A0C4DH55 119 aa13.68□□□□□ -0.22
CCDC88B-203ENST00000359902 ELOF1P60002 83 aaKnown RBP13.68□□□□□ -0.22
CCDC88B-203ENST00000359902 COL6A5A8TX70 2615 aa13.68□□□□□ -0.22
CCDC88B-203ENST00000359902 TRBV7-6A0A0J9YX20 115 aa13.68□□□□□ -0.22
CCDC88B-203ENST00000359902 RBM3P98179 157 aaKnown RBP13.68□□□□□ -0.22
CCDC88B-203ENST00000359902 K7EIL1 84 aa13.67□□□□□ -0.22
CCDC88B-203ENST00000359902 MRAPQ8TCY5 172 aa13.67□□□□□ -0.22
CCDC88B-203ENST00000359902 LAMTOR3Q9UHA4 124 aa13.67□□□□□ -0.22
CCDC88B-203ENST00000359902 H3BQ85 93 aa13.65□□□□□ -0.22
CCDC88B-203ENST00000359902 COX7CP15954 63 aa13.65□□□□□ -0.22
CCDC88B-203ENST00000359902 Q6ZQT0 140 aa13.64□□□□□ -0.23
CCDC88B-203ENST00000359902 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.64□□□□□ -0.23
CCDC88B-203ENST00000359902 LOC110117498A0A087WWA1 95 aa13.63□□□□□ -0.23
CCDC88B-203ENST00000359902 NBEAL1Q6ZS30 2694 aa13.63□□□□□ -0.23
CCDC88B-203ENST00000359902 ATOX1O00244 68 aa13.63□□□□□ -0.23
CCDC88B-203ENST00000359902 HIST1H4AP62805 103 aaKnown RBP13.63□□□□□ -0.23
CCDC88B-203ENST00000359902 CASC10Q5T4H9 136 aa13.6□□□□□ -0.23
CCDC88B-203ENST00000359902 LINC00528Q8N1L1 170 aa13.6□□□□□ -0.23
CCDC88B-203ENST00000359902 HUWE1Q7Z6Z7 4374 aaKnown RBP13.6□□□□□ -0.23
CCDC88B-203ENST00000359902 CRYGAP11844 174 aa13.59□□□□□ -0.23
CCDC88B-203ENST00000359902 J3KT08 172 aa13.58□□□□□ -0.23
CCDC88B-203ENST00000359902 USP17L23D6RBM5 183 aa13.58□□□□□ -0.24
CCDC88B-203ENST00000359902 SERTAD4-AS1Q5TG53 156 aa13.58□□□□□ -0.24
CCDC88B-203ENST00000359902 DSCR8Q96T75 97 aa13.58□□□□□ -0.24
CCDC88B-203ENST00000359902 TLX1NBP0CAT3 122 aa13.57□□□□□ -0.24
CCDC88B-203ENST00000359902 M0R2N4 97 aa13.57□□□□□ -0.24
CCDC88B-203ENST00000359902 A0A087WVE0 104 aa13.56□□□□□ -0.24
CCDC88B-203ENST00000359902 GHRHP01286 108 aa13.56□□□□□ -0.24
CCDC88B-203ENST00000359902 UBL5Q9BZL1 73 aa13.56□□□□□ -0.24
CCDC88B-203ENST00000359902 NKAPP1Q8N9T2 125 aa13.55□□□□□ -0.24
CCDC88B-203ENST00000359902 PDE6GP18545 87 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms