RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 C6orf48Q9UBA6 75 aa10.27□□□□□ -0.77
CHD4-201ENST00000357008 ELOF1P60002 83 aaKnown RBP10.26□□□□□ -0.77
CHD4-201ENST00000357008 LINC00167Q96N53 147 aa10.25□□□□□ -0.77
CHD4-201ENST00000357008 SETD2Q9BYW2 2564 aaPredicted RBP10.23□□□□□ -0.77
CHD4-201ENST00000357008 H3BPC8 53 aa10.23□□□□□ -0.77
CHD4-201ENST00000357008 Q8NBF4 154 aa10.21□□□□□ -0.77
CHD4-201ENST00000357008 ZFYVE26Q68DK2 2539 aa10.21□□□□□ -0.77
CHD4-201ENST00000357008 A0A1B0GU69 56 aa10.21□□□□□ -0.78
CHD4-201ENST00000357008 MUC4Q99102 2169 aa10.2□□□□□ -0.78
CHD4-201ENST00000357008 C1orf134Q5TEV5 83 aa10.2□□□□□ -0.78
CHD4-201ENST00000357008 ACYP2P14621 99 aa10.2□□□□□ -0.78
CHD4-201ENST00000357008 FHL3Q13643 280 aa10.19□□□□□ -0.78
CHD4-201ENST00000357008 PKD1L2Q7Z442 2459 aa10.19□□□□□ -0.78
CHD4-201ENST00000357008 LITAFQ99732 161 aa10.19□□□□□ -0.78
CHD4-201ENST00000357008 USP9YO00507 2555 aaPredicted RBP10.19□□□□□ -0.78
CHD4-201ENST00000357008 IGKV2D-30A0A075B6S6 120 aa10.19□□□□□ -0.78
CHD4-201ENST00000357008 IGKV2-30P06310 120 aa10.19□□□□□ -0.78
CHD4-201ENST00000357008 TM2D3Q9BRN9 247 aa10.18□□□□□ -0.78
CHD4-201ENST00000357008 Q6ZRX8 168 aa10.17□□□□□ -0.78
CHD4-201ENST00000357008 H3BNG1 76 aa10.17□□□□□ -0.78
CHD4-201ENST00000357008 SRCAPQ6ZRS2 3230 aa10.16□□□□□ -0.78
CHD4-201ENST00000357008 LINC00476Q8WZB0 136 aa10.15□□□□□ -0.78
CHD4-201ENST00000357008 C7orf65Q6ZTY9 151 aa10.15□□□□□ -0.78
CHD4-201ENST00000357008 LRRK2Q5S007 2527 aa10.15□□□□□ -0.78
CHD4-201ENST00000357008 SPAG11AQ6PDA7 123 aa10.14□□□□□ -0.79
CHD4-201ENST00000357008 TRAV22A0A0B4J277 110 aa10.14□□□□□ -0.79
CHD4-201ENST00000357008 MOBPQ13875 183 aa10.13□□□□□ -0.79
CHD4-201ENST00000357008 KLK9Q2XQG4 91 aa10.13□□□□□ -0.79
CHD4-201ENST00000357008 PTPRBP23467 1997 aa10.12□□□□□ -0.79
CHD4-201ENST00000357008 ZNF462Q96JM2 2506 aa10.12□□□□□ -0.79
CHD4-201ENST00000357008 GVQW2A0A096LPI5 108 aaPredicted RBP10.1□□□□□ -0.79
CHD4-201ENST00000357008 ERC2-IT1O76042 136 aa10.09□□□□□ -0.79
CHD4-201ENST00000357008 CEP295Q9C0D2 2601 aa10.08□□□□□ -0.8
CHD4-201ENST00000357008 NHLRC4P0CG21 123 aaPredicted RBP10.08□□□□□ -0.8
CHD4-201ENST00000357008 ST20-AS1Q8NBB2 130 aa10.07□□□□□ -0.8
CHD4-201ENST00000357008 ANKRD11Q6UB99 2663 aaPredicted RBP10.07□□□□□ -0.8
CHD4-201ENST00000357008 IGLV6-57P01721 117 aa10.07□□□□□ -0.8
CHD4-201ENST00000357008 TRBV7-4A0A0J9YYF1 115 aa10.07□□□□□ -0.8
CHD4-201ENST00000357008 FSHBP01225 129 aa10.06□□□□□ -0.8
CHD4-201ENST00000357008 SPACA4Q8TDM5 124 aa10.06□□□□□ -0.8
CHD4-201ENST00000357008 EPM2AB3EWF7 344 aa10.05□□□□□ -0.8
CHD4-201ENST00000357008 ATP11AUNQ6ZP68 121 aa10.04□□□□□ -0.8
CHD4-201ENST00000357008 PHF5AQ7RTV0 110 aaKnown RBP10.04□□□□□ -0.8
CHD4-201ENST00000357008 MDFIQ99750 246 aa10.04□□□□□ -0.8
CHD4-201ENST00000357008 VPREB1P12018 145 aa10.04□□□□□ -0.8
CHD4-201ENST00000357008 C16orf90A8MZG2 172 aa10.03□□□□□ -0.8
CHD4-201ENST00000357008 SERTAD4-AS1Q5TG53 156 aa10.03□□□□□ -0.8
CHD4-201ENST00000357008 RPL37AP61513 92 aaKnown RBP10.03□□□□□ -0.8
CHD4-201ENST00000357008 C8orf87E5RJ46 101 aa10.02□□□□□ -0.81
CHD4-201ENST00000357008 Q8NAQ8 132 aa10.01□□□□□ -0.81
CHD4-201ENST00000357008 Q6ZRP5 223 aa10.01□□□□□ -0.81
CHD4-201ENST00000357008 LINC00313P59037 77 aa10.01□□□□□ -0.81
CHD4-201ENST00000357008 LOC101927531A0A1B0GV80 90 aa10□□□□□ -0.81
CHD4-201ENST00000357008 COL27A1Q8IZC6 1860 aaPredicted RBP10□□□□□ -0.81
CHD4-201ENST00000357008 A8MWP4 228 aa9.99□□□□□ -0.81
CHD4-201ENST00000357008 K7EQZ3 153 aa9.99□□□□□ -0.81
CHD4-201ENST00000357008 CYP4F30PQ9H0H9 118 aa9.98□□□□□ -0.81
CHD4-201ENST00000357008 KLKP1Q107X0 134 aa9.98□□□□□ -0.81
CHD4-201ENST00000357008 EIF4EBP3O60516 100 aaPredicted RBP9.97□□□□□ -0.81
CHD4-201ENST00000357008 MTORP42345 2549 aa9.97□□□□□ -0.81
CHD4-201ENST00000357008 A8MUN3 132 aa9.97□□□□□ -0.81
CHD4-201ENST00000357008 LINC00588Q9Y4M8 146 aa9.95□□□□□ -0.82
CHD4-201ENST00000357008 LINC00528Q8N1L1 170 aa9.95□□□□□ -0.82
CHD4-201ENST00000357008 KCNQ1DNQ9H478 68 aa9.95□□□□□ -0.82
CHD4-201ENST00000357008 COA5Q86WW8 74 aa9.94□□□□□ -0.82
CHD4-201ENST00000357008 MRPL34Q9BQ48 92 aaKnown RBP9.92□□□□□ -0.82
CHD4-201ENST00000357008 DNAH10OSP0CZ25 163 aa9.92□□□□□ -0.82
CHD4-201ENST00000357008 FAM229AH3BQW9 127 aa9.92□□□□□ -0.82
CHD4-201ENST00000357008 COL4A2P08572 1712 aa9.92□□□□□ -0.82
CHD4-201ENST00000357008 IGLV1-50A0A075B6I6 118 aa9.92□□□□□ -0.82
CHD4-201ENST00000357008 NBDYA0A0U1RRE5 68 aa9.91□□□□□ -0.82
CHD4-201ENST00000357008 RTL8CO15255 209 aa9.91□□□□□ -0.82
CHD4-201ENST00000357008 IGLV8-61A0A075B6I0 122 aa9.91□□□□□ -0.82
CHD4-201ENST00000357008 CHTF8P0CG12 524 aa9.91□□□□□ -0.82
CHD4-201ENST00000357008 FAM168BA1KXE4 195 aa9.9□□□□□ -0.83
CHD4-201ENST00000357008 CENPFP49454 3210 aa9.89□□□□□ -0.83
CHD4-201ENST00000357008 CSNK1G2-AS1Q8NCQ2 148 aa9.88□□□□□ -0.83
CHD4-201ENST00000357008 TYMSOSQ8TAI1 123 aa9.87□□□□□ -0.83
CHD4-201ENST00000357008 LINC01600Q96MT4 127 aa9.87□□□□□ -0.83
CHD4-201ENST00000357008 H7BZZ5 65 aa9.87□□□□□ -0.83
CHD4-201ENST00000357008 IGFL1Q6UW32 110 aa9.86□□□□□ -0.83
CHD4-201ENST00000357008 SPTBN4Q9H254 2564 aa9.86□□□□□ -0.83
CHD4-201ENST00000357008 UQCR11O14957 56 aa9.86□□□□□ -0.83
CHD4-201ENST00000357008 PRR15Q8IV56 129 aa9.86□□□□□ -0.83
CHD4-201ENST00000357008 PRR34Q9NV39 138 aa9.85□□□□□ -0.83
CHD4-201ENST00000357008 F8P00451 2351 aa9.84□□□□□ -0.83
CHD4-201ENST00000357008 LINC00336Q6ZUF6 198 aa9.84□□□□□ -0.83
CHD4-201ENST00000357008 Q96NJ1 140 aa9.84□□□□□ -0.83
CHD4-201ENST00000357008 Q8N377 158 aa9.83□□□□□ -0.84
CHD4-201ENST00000357008 CHD8Q9HCK8 2581 aa9.83□□□□□ -0.84
CHD4-201ENST00000357008 C8orf17Q9NRJ1 99 aa9.81□□□□□ -0.84
CHD4-201ENST00000357008 POLQO75417 2590 aa9.81□□□□□ -0.84
CHD4-201ENST00000357008 SPINT4Q6UDR6 99 aa9.81□□□□□ -0.84
CHD4-201ENST00000357008 ANKRD17O75179 2603 aaKnown RBP9.8□□□□□ -0.84
CHD4-201ENST00000357008 KRTAP24-1Q3LI83 254 aa9.8□□□□□ -0.84
CHD4-201ENST00000357008 C15orf56Q8N910 161 aa9.79□□□□□ -0.84
CHD4-201ENST00000357008 PCSK5Q92824 1860 aa9.78□□□□□ -0.84
CHD4-201ENST00000357008 EP400Q96L91 3159 aa9.78□□□□□ -0.84
CHD4-201ENST00000357008 ACANP16112 2415 aa9.76□□□□□ -0.85
CHD4-201ENST00000357008 C9orf129Q5T035 196 aaKnown RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms