RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 LINC00643Q86TS7 51 aa14.67□□□□□ -0.06
SHMT1-202ENST00000352886 S100A7L2Q5SY68 101 aa14.66□□□□□ -0.06
SHMT1-202ENST00000352886 Q8N814 137 aa14.66□□□□□ -0.06
SHMT1-202ENST00000352886 H3BNG1 76 aa14.65□□□□□ -0.06
SHMT1-202ENST00000352886 MUC7Q8TAX7 377 aa14.65□□□□□ -0.06
SHMT1-202ENST00000352886 A0A1B0GX51 115 aa14.65□□□□□ -0.06
SHMT1-202ENST00000352886 C6orf99Q4VX62 202 aa14.65□□□□□ -0.06
SHMT1-202ENST00000352886 LINC00167Q96N53 147 aa14.64□□□□□ -0.07
SHMT1-202ENST00000352886 KRTAP24-1Q3LI83 254 aa14.64□□□□□ -0.07
SHMT1-202ENST00000352886 ANK2Q01484 3957 aa14.63□□□□□ -0.07
SHMT1-202ENST00000352886 FAM236AA0A1B0GUQ0 79 aa14.62□□□□□ -0.07
SHMT1-202ENST00000352886 FAM236BA0A1B0GV22 79 aa14.62□□□□□ -0.07
SHMT1-202ENST00000352886 EGFEM1PQ0D2K5 195 aa14.62□□□□□ -0.07
SHMT1-202ENST00000352886 C6orf48Q9UBA6 75 aa14.62□□□□□ -0.07
SHMT1-202ENST00000352886 GVQW2A0A096LPI5 108 aaPredicted RBP14.61□□□□□ -0.07
SHMT1-202ENST00000352886 IMUPQ9GZP8 106 aa14.61□□□□□ -0.07
SHMT1-202ENST00000352886 PKD1L1Q8TDX9 2849 aa14.6□□□□□ -0.07
SHMT1-202ENST00000352886 RPL18AQ02543 176 aaKnown RBP14.6□□□□□ -0.07
SHMT1-202ENST00000352886 HIGD2BQ4VC39 106 aa14.57□□□□□ -0.08
SHMT1-202ENST00000352886 ESRGQ1W209 222 aa14.57□□□□□ -0.08
SHMT1-202ENST00000352886 TMEM256-PLSCR3K7ERE1 68 aa14.56□□□□□ -0.08
SHMT1-202ENST00000352886 XAGE1AQ9HD64 81 aa14.56□□□□□ -0.08
SHMT1-202ENST00000352886 CMYA5Q8N3K9 4069 aa14.56□□□□□ -0.08
SHMT1-202ENST00000352886 ZNF561-AS1K7EIQ3 104 aa14.56□□□□□ -0.08
SHMT1-202ENST00000352886 FBN1P35555 2871 aaKnown RBP14.56□□□□□ -0.08
SHMT1-202ENST00000352886 IGLV6-57P01721 117 aa14.55□□□□□ -0.08
SHMT1-202ENST00000352886 C9orf153Q5TBE3 101 aa14.55□□□□□ -0.08
SHMT1-202ENST00000352886 KRTAP26-1Q6PEX3 210 aa14.55□□□□□ -0.08
SHMT1-202ENST00000352886 STAB1Q9NY15 2570 aa14.55□□□□□ -0.08
SHMT1-202ENST00000352886 TENM3Q9P273 2699 aa14.55□□□□□ -0.08
SHMT1-202ENST00000352886 LINC00575Q6W349 94 aa14.55□□□□□ -0.08
SHMT1-202ENST00000352886 C3orf22Q8N5N4 141 aa14.55□□□□□ -0.08
SHMT1-202ENST00000352886 CAMK2N2Q96S95 79 aa14.54□□□□□ -0.08
SHMT1-202ENST00000352886 LINC00846Q9NV44 126 aa14.54□□□□□ -0.08
SHMT1-202ENST00000352886 JMJD7-PLA2G4BH0Y9G9 81 aa14.53□□□□□ -0.08
SHMT1-202ENST00000352886 DEFB131BA0A096LNP1 70 aa14.52□□□□□ -0.09
SHMT1-202ENST00000352886 C11orf45Q8TAV5 145 aa14.51□□□□□ -0.09
SHMT1-202ENST00000352886 TRBV10-3A0A0K0K1G6 114 aa14.5□□□□□ -0.09
SHMT1-202ENST00000352886 hADV29S1A0JD25 119 aa14.5□□□□□ -0.09
SHMT1-202ENST00000352886 CCKP06307 115 aa14.5□□□□□ -0.09
SHMT1-202ENST00000352886 LOC107984640A0A0U1RRK4 108 aa14.49□□□□□ -0.09
SHMT1-202ENST00000352886 UQCRQO14949 82 aa14.49□□□□□ -0.09
SHMT1-202ENST00000352886 C15orf56Q8N910 161 aa14.49□□□□□ -0.09
SHMT1-202ENST00000352886 FLNBO75369 2602 aaKnown RBP14.48□□□□□ -0.09
SHMT1-202ENST00000352886 Q6ZRU5 148 aa14.48□□□□□ -0.09
SHMT1-202ENST00000352886 C1orf43Q9BWL3 253 aa14.47□□□□□ -0.09
SHMT1-202ENST00000352886 TRAV23DV6A0A075B6W5 121 aa14.46□□□□□ -0.09
SHMT1-202ENST00000352886 LINC01556Q5JQF7 62 aa14.46□□□□□ -0.09
SHMT1-202ENST00000352886 IGKV2D-24A0A075B6R9 120 aa14.44□□□□□ -0.1
SHMT1-202ENST00000352886 DIRC1Q969H9 104 aa14.44□□□□□ -0.1
SHMT1-202ENST00000352886 IGKV3D-7A0A0C4DH55 119 aa14.43□□□□□ -0.1
SHMT1-202ENST00000352886 Q6JHZ5 121 aa14.43□□□□□ -0.1
SHMT1-202ENST00000352886 VPREB1P12018 145 aa14.43□□□□□ -0.1
SHMT1-202ENST00000352886 C2orf48Q96LS8 159 aa14.43□□□□□ -0.1
SHMT1-202ENST00000352886 MAST4O15021 2626 aa14.42□□□□□ -0.1
SHMT1-202ENST00000352886 NDUFC2-KCTD14E9PQ53 114 aa14.42□□□□□ -0.1
SHMT1-202ENST00000352886 DNAH3Q8TD57 4116 aa14.41□□□□□ -0.1
SHMT1-202ENST00000352886 Q6ZQY7 126 aa14.41□□□□□ -0.1
SHMT1-202ENST00000352886 ZNF73O43830 326 aaPredicted RBP14.41□□□□□ -0.1
SHMT1-202ENST00000352886 J3KT08 172 aa14.4□□□□□ -0.1
SHMT1-202ENST00000352886 COX7CP15954 63 aa14.4□□□□□ -0.1
SHMT1-202ENST00000352886 C5orf47Q569G3 176 aa14.4□□□□□ -0.1
SHMT1-202ENST00000352886 LAMTOR3Q9UHA4 124 aa14.39□□□□□ -0.11
SHMT1-202ENST00000352886 FAM19A5Q7Z5A7 132 aaPredicted RBP14.38□□□□□ -0.11
SHMT1-202ENST00000352886 RBM3P98179 157 aaKnown RBP14.37□□□□□ -0.11
SHMT1-202ENST00000352886 NOTCH1P46531 2555 aa14.37□□□□□ -0.11
SHMT1-202ENST00000352886 Q6ZRP5 223 aa14.36□□□□□ -0.11
SHMT1-202ENST00000352886 M0R378 163 aa14.36□□□□□ -0.11
SHMT1-202ENST00000352886 PRB2P02812 416 aaPredicted RBP14.36□□□□□ -0.11
SHMT1-202ENST00000352886 COX7BP24311 80 aa14.36□□□□□ -0.11
SHMT1-202ENST00000352886 DNAH10OSP0CZ25 163 aa14.35□□□□□ -0.11
SHMT1-202ENST00000352886 ELOF1P60002 83 aaKnown RBP14.35□□□□□ -0.11
SHMT1-202ENST00000352886 CRYGAP11844 174 aa14.34□□□□□ -0.11
SHMT1-202ENST00000352886 HIST1H4AP62805 103 aaKnown RBP14.34□□□□□ -0.11
SHMT1-202ENST00000352886 SYCNQ0VAF6 134 aa14.34□□□□□ -0.11
SHMT1-202ENST00000352886 Q6ZQT0 140 aa14.33□□□□□ -0.12
SHMT1-202ENST00000352886 A0A087WVE0 104 aa14.32□□□□□ -0.12
SHMT1-202ENST00000352886 TRAV10A0A0B4J240 114 aa14.31□□□□□ -0.12
SHMT1-202ENST00000352886 F8WDY8 70 aa14.31□□□□□ -0.12
SHMT1-202ENST00000352886 LOC110117498A0A087WWA1 95 aa14.31□□□□□ -0.12
SHMT1-202ENST00000352886 TRBV7-6A0A0J9YX20 115 aa14.31□□□□□ -0.12
SHMT1-202ENST00000352886 H3BQ85 93 aa14.3□□□□□ -0.12
SHMT1-202ENST00000352886 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.3□□□□□ -0.12
SHMT1-202ENST00000352886 ATOX1O00244 68 aa14.3□□□□□ -0.12
SHMT1-202ENST00000352886 RPS28P62857 69 aaKnown RBP14.3□□□□□ -0.12
SHMT1-202ENST00000352886 CYSTM1Q9H1C7 97 aa14.3□□□□□ -0.12
SHMT1-202ENST00000352886 LINC00588Q9Y4M8 146 aa14.3□□□□□ -0.12
SHMT1-202ENST00000352886 DSCR8Q96T75 97 aa14.29□□□□□ -0.12
SHMT1-202ENST00000352886 UBL5Q9BZL1 73 aa14.28□□□□□ -0.12
SHMT1-202ENST00000352886 MRAPQ8TCY5 172 aa14.27□□□□□ -0.12
SHMT1-202ENST00000352886 BAHCC1Q9P281 2608 aa14.27□□□□□ -0.12
SHMT1-202ENST00000352886 M0R2N4 97 aa14.26□□□□□ -0.13
SHMT1-202ENST00000352886 TM2D3Q9BRN9 247 aa14.26□□□□□ -0.13
SHMT1-202ENST00000352886 ATP5EP2Q5VTU8 51 aa14.25□□□□□ -0.13
SHMT1-202ENST00000352886 COL6A5A8TX70 2615 aa14.25□□□□□ -0.13
SHMT1-202ENST00000352886 LINC00528Q8N1L1 170 aa14.25□□□□□ -0.13
SHMT1-202ENST00000352886 HUWE1Q7Z6Z7 4374 aaKnown RBP14.23□□□□□ -0.13
SHMT1-202ENST00000352886 GHRHP01286 108 aa14.23□□□□□ -0.13
SHMT1-202ENST00000352886 SERTAD4-AS1Q5TG53 156 aa14.22□□□□□ -0.13
SHMT1-202ENST00000352886 NKAPP1Q8N9T2 125 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms