RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 LUZP6Q538Z0 58 aa2.36□□□□□ -2.03
CSMD3-202ENST00000339701 A0A087X002 238 aa2.36□□□□□ -2.03
CSMD3-202ENST00000339701 LINC01547P58512 204 aaPredicted RBP2.36□□□□□ -2.03
CSMD3-202ENST00000339701 C22orf34Q6ZV56 151 aa2.36□□□□□ -2.03
CSMD3-202ENST00000339701 KIAA0087Q14695 138 aa2.36□□□□□ -2.03
CSMD3-202ENST00000339701 PRAC2D3DTV9 90 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 C2orf91Q6ZV80 131 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 SNURFQ9Y675 71 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 MT-ATP8P03928 68 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 RPL39LQ96EH5 51 aaKnown RBP2.35□□□□□ -2.03
CSMD3-202ENST00000339701 IGLV1-51P01701 117 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 LINC01556Q5JQF7 62 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 PATE2Q6UY27 113 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 TYMSOSQ8TAI1 123 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 AVPP01185 164 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 MSMPQ1L6U9 139 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 LINC00575Q6W349 94 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 IGLV5-39A0A0G2JS06 123 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 GNRH2O43555 120 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 PROK1P58294 105 aa2.35□□□□□ -2.03
CSMD3-202ENST00000339701 IGLV1-40P01703 118 aa2.34□□□□□ -2.03
CSMD3-202ENST00000339701 SBSPONQ8IVN8 264 aa2.34□□□□□ -2.03
CSMD3-202ENST00000339701 Q8NBF4 154 aa2.34□□□□□ -2.03
CSMD3-202ENST00000339701 Q6ZRP5 223 aa2.34□□□□□ -2.03
CSMD3-202ENST00000339701 Q6ZTI0 123 aa2.34□□□□□ -2.03
CSMD3-202ENST00000339701 H0Y9P7 68 aa2.34□□□□□ -2.03
CSMD3-202ENST00000339701 LINC01600Q96MT4 127 aa2.34□□□□□ -2.03
CSMD3-202ENST00000339701 A8MZ25 164 aa2.34□□□□□ -2.03
CSMD3-202ENST00000339701 SSBP3-AS1Q7Z2R9 100 aa2.34□□□□□ -2.03
CSMD3-202ENST00000339701 CRIPTQ9P021 101 aa2.34□□□□□ -2.03
CSMD3-202ENST00000339701 SMIM1B2RUZ4 78 aa2.34□□□□□ -2.04
CSMD3-202ENST00000339701 RPL39P62891 51 aaKnown RBP2.34□□□□□ -2.04
CSMD3-202ENST00000339701 SMIM11BQ8TCY0 68 aa2.34□□□□□ -2.04
CSMD3-202ENST00000339701 CAMK2N1Q7Z7J9 78 aa2.34□□□□□ -2.04
CSMD3-202ENST00000339701 KIF25-AS1Q9Y6Z4 181 aa2.34□□□□□ -2.04
CSMD3-202ENST00000339701 LINC00959A0A1B0GUT2 108 aa2.33□□□□□ -2.04
CSMD3-202ENST00000339701 TEP1Q99973 2627 aaKnown RBP2.33□□□□□ -2.04
CSMD3-202ENST00000339701 MPLKIPQ8TAP9 179 aa2.33□□□□□ -2.04
CSMD3-202ENST00000339701 CHD6Q8TD26 2715 aa2.33□□□□□ -2.04
CSMD3-202ENST00000339701 UTP20O75691 2785 aaKnown RBP2.33□□□□□ -2.04
CSMD3-202ENST00000339701 NBDYA0A0U1RRE5 68 aa2.33□□□□□ -2.04
CSMD3-202ENST00000339701 Q6ZS46 218 aa2.33□□□□□ -2.04
CSMD3-202ENST00000339701 IGLV9-49A0A0B4J1Y8 123 aa2.33□□□□□ -2.04
CSMD3-202ENST00000339701 MRPS12O15235 138 aaKnown RBP2.33□□□□□ -2.04
CSMD3-202ENST00000339701 SPINK6Q6UWN8 80 aa2.33□□□□□ -2.04
CSMD3-202ENST00000339701 TSHBP01222 138 aa2.33□□□□□ -2.04
CSMD3-202ENST00000339701 KTN1-AS1Q86SY8 53 aa2.33□□□□□ -2.04
CSMD3-202ENST00000339701 RBM12B-AS1Q9P1G2 102 aa2.33□□□□□ -2.04
CSMD3-202ENST00000339701 CASC10Q5T4H9 136 aa2.32□□□□□ -2.04
CSMD3-202ENST00000339701 WFDC10BQ8IUB3 73 aa2.32□□□□□ -2.04
CSMD3-202ENST00000339701 LINC00242Q5T6M2 205 aa2.32□□□□□ -2.04
CSMD3-202ENST00000339701 RTL8CO15255 209 aa2.32□□□□□ -2.04
CSMD3-202ENST00000339701 C6orf48Q9UBA6 75 aa2.32□□□□□ -2.04
CSMD3-202ENST00000339701 RNASE3P12724 160 aaKnown RBP2.32□□□□□ -2.04
CSMD3-202ENST00000339701 Q6ZQT0 140 aa2.32□□□□□ -2.04
CSMD3-202ENST00000339701 LCA10Q71F78 164 aa2.32□□□□□ -2.04
CSMD3-202ENST00000339701 SPRNQ5BIV9 151 aa2.31□□□□□ -2.04
CSMD3-202ENST00000339701 IGFL4Q6B9Z1 124 aa2.31□□□□□ -2.04
CSMD3-202ENST00000339701 IGLV2-14P01704 120 aa2.31□□□□□ -2.04
CSMD3-202ENST00000339701 C1orf64Q8NEQ6 169 aa2.31□□□□□ -2.04
CSMD3-202ENST00000339701 CYSRT1A8MQ03 144 aa2.31□□□□□ -2.04
CSMD3-202ENST00000339701 ADAMTSL4-AS1Q5T5F5 129 aa2.31□□□□□ -2.04
CSMD3-202ENST00000339701 ZNF575Q86XF7 245 aa2.31□□□□□ -2.04
CSMD3-202ENST00000339701 DMAC1Q96GE9 116 aa2.31□□□□□ -2.04
CSMD3-202ENST00000339701 IGLV4-60A0A075B6I1 120 aa2.31□□□□□ -2.04
CSMD3-202ENST00000339701 A0A096LNI7 61 aa2.31□□□□□ -2.04
CSMD3-202ENST00000339701 C9orf116Q5BN46 136 aaPredicted RBP2.31□□□□□ -2.04
CSMD3-202ENST00000339701 FLNAP21333 2647 aaKnown RBP2.31□□□□□ -2.04
CSMD3-202ENST00000339701 DNAH12Q6ZR08 3092 aa2.3□□□□□ -2.04
CSMD3-202ENST00000339701 TEX15Q9BXT5 2789 aa2.3□□□□□ -2.04
CSMD3-202ENST00000339701 IGHV3OR16-9A0A0B4J2B5 98 aa2.3□□□□□ -2.04
CSMD3-202ENST00000339701 LINC00694P0DN24 101 aa2.3□□□□□ -2.04
CSMD3-202ENST00000339701 PLA2G2DQ9UNK4 145 aa2.3□□□□□ -2.04
CSMD3-202ENST00000339701 A0A0A0MQY5 61 aa2.3□□□□□ -2.04
CSMD3-202ENST00000339701 A8MTW9 85 aa2.3□□□□□ -2.04
CSMD3-202ENST00000339701 A8MWP4 228 aa2.3□□□□□ -2.04
CSMD3-202ENST00000339701 Q9BRP9 147 aa2.3□□□□□ -2.04
CSMD3-202ENST00000339701 LINC00205P59089 165 aa2.3□□□□□ -2.04
CSMD3-202ENST00000339701 HRCT1Q6UXD1 115 aa2.3□□□□□ -2.04
CSMD3-202ENST00000339701 X6R8D5 127 aa2.3□□□□□ -2.04
CSMD3-202ENST00000339701 LOC100131303A0A0U1RQF7 123 aa2.3□□□□□ -2.04
CSMD3-202ENST00000339701 OXTP01178 125 aa2.29□□□□□ -2.04
CSMD3-202ENST00000339701 XIRP2A4UGR9 3374 aa2.29□□□□□ -2.04
CSMD3-202ENST00000339701 ITPR2Q14571 2701 aa2.29□□□□□ -2.04
CSMD3-202ENST00000339701 C9orf163Q8N9P6 203 aa2.29□□□□□ -2.04
CSMD3-202ENST00000339701 Q6ZRX8 168 aa2.29□□□□□ -2.04
CSMD3-202ENST00000339701 K7EQZ3 153 aa2.29□□□□□ -2.04
CSMD3-202ENST00000339701 C5orf42Q9H799 3197 aa2.29□□□□□ -2.04
CSMD3-202ENST00000339701 UNQ9165/PRO28630Q6UXU0 137 aa2.29□□□□□ -2.04
CSMD3-202ENST00000339701 K7EIL1 84 aa2.28□□□□□ -2.04
CSMD3-202ENST00000339701 CRIP3Q6Q6R5 217 aa2.28□□□□□ -2.04
CSMD3-202ENST00000339701 NSD1Q96L73 2696 aaPredicted RBP2.28□□□□□ -2.04
CSMD3-202ENST00000339701 LAMA2P24043 3122 aaKnown RBP2.28□□□□□ -2.04
CSMD3-202ENST00000339701 ZNF292O60281 2723 aa2.28□□□□□ -2.04
CSMD3-202ENST00000339701 Q1T7F1 81 aa2.28□□□□□ -2.04
CSMD3-202ENST00000339701 BRWD1-AS2P59051 145 aa2.28□□□□□ -2.04
CSMD3-202ENST00000339701 LINC00476Q8WZB0 136 aa2.28□□□□□ -2.04
CSMD3-202ENST00000339701 CDC42SE1Q9NRR8 79 aa2.28□□□□□ -2.04
CSMD3-202ENST00000339701 LINC00313P59037 77 aa2.28□□□□□ -2.05
CSMD3-202ENST00000339701 Q9UF83 564 aa2.28□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 163.5 ms