RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CD164Q04900 197 aa10.16□□□□□ -0.78
COL7A1-201ENST00000328333 IGLV5-45A0A087WSX0 123 aa10.15□□□□□ -0.78
COL7A1-201ENST00000328333 SMIM29Q86T20 159 aa10.15□□□□□ -0.78
COL7A1-201ENST00000328333 PRO0461Q9UI25 63 aa10.15□□□□□ -0.79
COL7A1-201ENST00000328333 STAB1Q9NY15 2570 aa10.14□□□□□ -0.79
COL7A1-201ENST00000328333 PRR3P79522 188 aaKnown RBP10.13□□□□□ -0.79
COL7A1-201ENST00000328333 MOBPQ13875 183 aa10.13□□□□□ -0.79
COL7A1-201ENST00000328333 SPINK1P00995 79 aa10.12□□□□□ -0.79
COL7A1-201ENST00000328333 C6orf223Q8N319 242 aa10.12□□□□□ -0.79
COL7A1-201ENST00000328333 SPATA3Q8NHX4 192 aa10.11□□□□□ -0.79
COL7A1-201ENST00000328333 FHL2Q14192 279 aa10.11□□□□□ -0.79
COL7A1-201ENST00000328333 PLA2G2AP14555 144 aa10.1□□□□□ -0.79
COL7A1-201ENST00000328333 LOC101927531A0A1B0GV80 90 aa10.1□□□□□ -0.79
COL7A1-201ENST00000328333 IGLV1-51P01701 117 aa10.1□□□□□ -0.79
COL7A1-201ENST00000328333 Q6ZQT0 140 aa10.1□□□□□ -0.79
COL7A1-201ENST00000328333 ODF3L2Q3SX64 289 aa10.08□□□□□ -0.8
COL7A1-201ENST00000328333 ELOF1P60002 83 aaKnown RBP10.08□□□□□ -0.8
COL7A1-201ENST00000328333 IGLV5-52A0A0A0MRZ9 124 aa10.07□□□□□ -0.8
COL7A1-201ENST00000328333 Q8NBF4 154 aa10.07□□□□□ -0.8
COL7A1-201ENST00000328333 IGLV4-60A0A075B6I1 120 aa10.07□□□□□ -0.8
COL7A1-201ENST00000328333 KLKP1Q107X0 134 aa10.07□□□□□ -0.8
COL7A1-201ENST00000328333 LINC01006Q8NI28 216 aa10.07□□□□□ -0.8
COL7A1-201ENST00000328333 IGKV2D-30A0A075B6S6 120 aa10.07□□□□□ -0.8
COL7A1-201ENST00000328333 IGKV2-30P06310 120 aa10.07□□□□□ -0.8
COL7A1-201ENST00000328333 SPINT4Q6UDR6 99 aa10.07□□□□□ -0.8
COL7A1-201ENST00000328333 A0A1W2PNU3 283 aaPredicted RBP10.06□□□□□ -0.8
COL7A1-201ENST00000328333 PRLHP81277 87 aa10.05□□□□□ -0.8
COL7A1-201ENST00000328333 IGHV3OR16-9A0A0B4J2B5 98 aa10.05□□□□□ -0.8
COL7A1-201ENST00000328333 KTN1-AS1Q86SY8 53 aa10.04□□□□□ -0.8
COL7A1-201ENST00000328333 PLA2G5P39877 138 aa10.04□□□□□ -0.8
COL7A1-201ENST00000328333 UQCR11O14957 56 aa10.04□□□□□ -0.8
COL7A1-201ENST00000328333 GCN1Q92616 2671 aaKnown RBP10.04□□□□□ -0.8
COL7A1-201ENST00000328333 ITPR3Q14573 2671 aa10.04□□□□□ -0.8
COL7A1-201ENST00000328333 TRBV7-4A0A0J9YYF1 115 aa10.03□□□□□ -0.8
COL7A1-201ENST00000328333 LINC01556Q5JQF7 62 aa10.03□□□□□ -0.8
COL7A1-201ENST00000328333 Q6ZRX8 168 aa10.03□□□□□ -0.8
COL7A1-201ENST00000328333 SMCPP49901 116 aaPredicted RBP10.02□□□□□ -0.81
COL7A1-201ENST00000328333 FSHBP01225 129 aa10.01□□□□□ -0.81
COL7A1-201ENST00000328333 C10orf99Q6UWK7 81 aa10□□□□□ -0.81
COL7A1-201ENST00000328333 CHD6Q8TD26 2715 aa9.99□□□□□ -0.81
COL7A1-201ENST00000328333 KIAA0087Q14695 138 aa9.99□□□□□ -0.81
COL7A1-201ENST00000328333 FAM229AH3BQW9 127 aa9.98□□□□□ -0.81
COL7A1-201ENST00000328333 A8MTW9 85 aa9.98□□□□□ -0.81
COL7A1-201ENST00000328333 TM2D3Q9BRN9 247 aa9.98□□□□□ -0.81
COL7A1-201ENST00000328333 KIF25-AS1Q9Y6Z4 181 aa9.97□□□□□ -0.81
COL7A1-201ENST00000328333 LYPD5Q6UWN5 251 aa9.97□□□□□ -0.81
COL7A1-201ENST00000328333 H3BNG1 76 aa9.96□□□□□ -0.81
COL7A1-201ENST00000328333 OXLD1Q5BKU9 147 aa9.96□□□□□ -0.82
COL7A1-201ENST00000328333 PRR15Q8IV56 129 aa9.95□□□□□ -0.82
COL7A1-201ENST00000328333 CRIPTQ9P021 101 aa9.95□□□□□ -0.82
COL7A1-201ENST00000328333 DEFB116Q30KQ4 102 aa9.95□□□□□ -0.82
COL7A1-201ENST00000328333 A8MWP4 228 aa9.95□□□□□ -0.82
COL7A1-201ENST00000328333 INAFM1C9JVW0 142 aa9.95□□□□□ -0.82
COL7A1-201ENST00000328333 Q9UF83 564 aa9.95□□□□□ -0.82
COL7A1-201ENST00000328333 COL6A5A8TX70 2615 aa9.95□□□□□ -0.82
COL7A1-201ENST00000328333 M0R2N4 97 aa9.94□□□□□ -0.82
COL7A1-201ENST00000328333 HELZ2Q9BYK8 2649 aaKnown RBP9.94□□□□□ -0.82
COL7A1-201ENST00000328333 PLA2G1BP04054 148 aaKnown RBP9.94□□□□□ -0.82
COL7A1-201ENST00000328333 C16orf95Q9H693 158 aa9.94□□□□□ -0.82
COL7A1-201ENST00000328333 LINC01600Q96MT4 127 aa9.93□□□□□ -0.82
COL7A1-201ENST00000328333 FAM19A4Q96LR4 140 aa9.93□□□□□ -0.82
COL7A1-201ENST00000328333 C22orf24Q9Y442 160 aa9.93□□□□□ -0.82
COL7A1-201ENST00000328333 LINC00313P59037 77 aa9.92□□□□□ -0.82
COL7A1-201ENST00000328333 DMBT1Q9UGM3 2413 aaPredicted RBP9.92□□□□□ -0.82
COL7A1-201ENST00000328333 Q6ZRU5 148 aa9.92□□□□□ -0.82
COL7A1-201ENST00000328333 LY6G6CO95867 125 aa9.91□□□□□ -0.82
COL7A1-201ENST00000328333 UNC79Q9P2D8 2635 aa9.91□□□□□ -0.82
COL7A1-201ENST00000328333 SSBP3-AS1Q7Z2R9 100 aa9.91□□□□□ -0.82
COL7A1-201ENST00000328333 COA5Q86WW8 74 aa9.91□□□□□ -0.82
COL7A1-201ENST00000328333 LY6G6DO95868 133 aa9.91□□□□□ -0.82
COL7A1-201ENST00000328333 FAM218AQ96MZ4 157 aa9.91□□□□□ -0.82
COL7A1-201ENST00000328333 GVQW2A0A096LPI5 108 aaPredicted RBP9.91□□□□□ -0.82
COL7A1-201ENST00000328333 C18orf65Q6ZTR6 163 aa9.9□□□□□ -0.82
COL7A1-201ENST00000328333 SMCR5Q8TEV8 140 aa9.9□□□□□ -0.82
COL7A1-201ENST00000328333 IGLV6-57P01721 117 aa9.9□□□□□ -0.82
COL7A1-201ENST00000328333 Q6ZSN1 163 aa9.9□□□□□ -0.82
COL7A1-201ENST00000328333 C19orf84I3L1E1 186 aa9.89□□□□□ -0.83
COL7A1-201ENST00000328333 SPANXA2-OT1Q8N9U9 137 aa9.89□□□□□ -0.83
COL7A1-201ENST00000328333 LINC00476Q8WZB0 136 aa9.88□□□□□ -0.83
COL7A1-201ENST00000328333 LCA10Q71F78 164 aa9.88□□□□□ -0.83
COL7A1-201ENST00000328333 STAB2Q8WWQ8 2551 aa9.87□□□□□ -0.83
COL7A1-201ENST00000328333 MIR22HGQ0VDD5 57 aa9.86□□□□□ -0.83
COL7A1-201ENST00000328333 C1orf134Q5TEV5 83 aa9.86□□□□□ -0.83
COL7A1-201ENST00000328333 C16orf90A8MZG2 172 aa9.84□□□□□ -0.83
COL7A1-201ENST00000328333 LINC00167Q96N53 147 aa9.84□□□□□ -0.83
COL7A1-201ENST00000328333 WIPF1O43516 503 aa9.83□□□□□ -0.84
COL7A1-201ENST00000328333 RPL37AP61513 92 aaKnown RBP9.82□□□□□ -0.84
COL7A1-201ENST00000328333 LINC00315P59091 139 aa9.82□□□□□ -0.84
COL7A1-201ENST00000328333 TEX15Q9BXT5 2789 aa9.82□□□□□ -0.84
COL7A1-201ENST00000328333 COL4A2P08572 1712 aa9.81□□□□□ -0.84
COL7A1-201ENST00000328333 WISP2O76076 250 aa9.81□□□□□ -0.84
COL7A1-201ENST00000328333 MDFIQ99750 246 aa9.8□□□□□ -0.84
COL7A1-201ENST00000328333 H7BZZ5 65 aa9.8□□□□□ -0.84
COL7A1-201ENST00000328333 Q6ZRP5 223 aa9.8□□□□□ -0.84
COL7A1-201ENST00000328333 BAHCC1Q9P281 2608 aa9.8□□□□□ -0.84
COL7A1-201ENST00000328333 LINC00336Q6ZUF6 198 aa9.79□□□□□ -0.84
COL7A1-201ENST00000328333 EPM2AB3EWF7 344 aa9.79□□□□□ -0.84
COL7A1-201ENST00000328333 FHL3Q13643 280 aa9.78□□□□□ -0.84
COL7A1-201ENST00000328333 A8MUN3 132 aa9.78□□□□□ -0.84
COL7A1-201ENST00000328333 CDC42SE1Q9NRR8 79 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 109.7 ms