RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 PSPHP1O15172 72 aa13.29□□□□□ -0.28
USP48-201ENST00000308271 MAST4O15021 2626 aa13.28□□□□□ -0.28
USP48-201ENST00000308271 ANKRD17O75179 2603 aaKnown RBP13.28□□□□□ -0.28
USP48-201ENST00000308271 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.27□□□□□ -0.28
USP48-201ENST00000308271 C10orf25Q5T742 122 aa13.27□□□□□ -0.28
USP48-201ENST00000308271 REG3GQ6UW15 175 aa13.27□□□□□ -0.28
USP48-201ENST00000308271 ELOF1P60002 83 aaKnown RBP13.27□□□□□ -0.28
USP48-201ENST00000308271 CENPEQ02224 2701 aa13.27□□□□□ -0.29
USP48-201ENST00000308271 A0A1B0GW54 56 aa13.27□□□□□ -0.29
USP48-201ENST00000308271 HCG22E2RYF7 251 aa13.27□□□□□ -0.29
USP48-201ENST00000308271 C6orf48Q9UBA6 75 aa13.26□□□□□ -0.29
USP48-201ENST00000308271 NANOS2P60321 138 aaKnown RBP13.25□□□□□ -0.29
USP48-201ENST00000308271 TM2D3Q9BRN9 247 aa13.25□□□□□ -0.29
USP48-201ENST00000308271 PRR15LQ9BU68 103 aa13.25□□□□□ -0.29
USP48-201ENST00000308271 SMIM29Q86T20 159 aa13.24□□□□□ -0.29
USP48-201ENST00000308271 MKI67P46013 3256 aaKnown RBP13.24□□□□□ -0.29
USP48-201ENST00000308271 LAMA3Q16787 3333 aa13.24□□□□□ -0.29
USP48-201ENST00000308271 CASC2Q6XLA1 102 aa13.24□□□□□ -0.29
USP48-201ENST00000308271 KIAA0087Q14695 138 aa13.23□□□□□ -0.29
USP48-201ENST00000308271 A0A087WSZ3 146 aa13.23□□□□□ -0.29
USP48-201ENST00000308271 hDV103S1A0JD37 113 aa13.22□□□□□ -0.29
USP48-201ENST00000308271 Q6ZTC4 211 aa13.22□□□□□ -0.29
USP48-201ENST00000308271 ATRQ13535 2644 aa13.2□□□□□ -0.3
USP48-201ENST00000308271 HELZ2Q9BYK8 2649 aaKnown RBP13.19□□□□□ -0.3
USP48-201ENST00000308271 H0Y9P7 68 aa13.19□□□□□ -0.3
USP48-201ENST00000308271 SMR3AQ99954 134 aa13.19□□□□□ -0.3
USP48-201ENST00000308271 USP24Q9UPU5 2620 aa13.19□□□□□ -0.3
USP48-201ENST00000308271 PLAC8L1A1L4L8 177 aa13.19□□□□□ -0.3
USP48-201ENST00000308271 SEC61GP60059 68 aa13.19□□□□□ -0.3
USP48-201ENST00000308271 X6R8D5 127 aa13.18□□□□□ -0.3
USP48-201ENST00000308271 MGAM2Q2M2H8 2515 aa13.18□□□□□ -0.3
USP48-201ENST00000308271 KLKP1Q107X0 134 aa13.18□□□□□ -0.3
USP48-201ENST00000308271 IGLV6-57P01721 117 aa13.18□□□□□ -0.3
USP48-201ENST00000308271 C7orf33Q8WU49 177 aa13.18□□□□□ -0.3
USP48-201ENST00000308271 ZNF706Q9Y5V0 76 aaPredicted RBP13.17□□□□□ -0.3
USP48-201ENST00000308271 ERC2-IT1O76042 136 aa13.17□□□□□ -0.3
USP48-201ENST00000308271 FSHBP01225 129 aa13.17□□□□□ -0.3
USP48-201ENST00000308271 RETNQ9HD89 108 aa13.16□□□□□ -0.3
USP48-201ENST00000308271 OXLD1Q5BKU9 147 aa13.16□□□□□ -0.3
USP48-201ENST00000308271 Q9BRP9 147 aa13.15□□□□□ -0.3
USP48-201ENST00000308271 GVQW2A0A096LPI5 108 aaPredicted RBP13.15□□□□□ -0.3
USP48-201ENST00000308271 IL17DQ8TAD2 202 aa13.15□□□□□ -0.31
USP48-201ENST00000308271 C4orf48Q5BLP8 95 aa13.14□□□□□ -0.31
USP48-201ENST00000308271 DEFB116Q30KQ4 102 aa13.13□□□□□ -0.31
USP48-201ENST00000308271 Q8NBF4 154 aa13.12□□□□□ -0.31
USP48-201ENST00000308271 LINC00474Q9P2X8 69 aa13.12□□□□□ -0.31
USP48-201ENST00000308271 LIMD2Q9BT23 127 aa13.12□□□□□ -0.31
USP48-201ENST00000308271 BRCA2P51587 3418 aa13.12□□□□□ -0.31
USP48-201ENST00000308271 TRANK1O15050 2925 aa13.11□□□□□ -0.31
USP48-201ENST00000308271 C9orf129Q5T035 196 aaKnown RBP13.11□□□□□ -0.31
USP48-201ENST00000308271 C22orf24Q9Y442 160 aa13.11□□□□□ -0.31
USP48-201ENST00000308271 IGLV9-49A0A0B4J1Y8 123 aa13.11□□□□□ -0.31
USP48-201ENST00000308271 SPINK6Q6UWN8 80 aa13.1□□□□□ -0.31
USP48-201ENST00000308271 SETXQ7Z333 2677 aaKnown RBP13.09□□□□□ -0.31
USP48-201ENST00000308271 H7BZZ5 65 aa13.09□□□□□ -0.31
USP48-201ENST00000308271 LINC01556Q5JQF7 62 aa13.08□□□□□ -0.32
USP48-201ENST00000308271 PRUNE2Q8WUY3 3088 aa13.07□□□□□ -0.32
USP48-201ENST00000308271 OBSCN-AS1Q96MR7 158 aa13.06□□□□□ -0.32
USP48-201ENST00000308271 PCOTHQ58A44 107 aa13.06□□□□□ -0.32
USP48-201ENST00000308271 C1orf64Q8NEQ6 169 aa13.06□□□□□ -0.32
USP48-201ENST00000308271 LINC00167Q96N53 147 aa13.06□□□□□ -0.32
USP48-201ENST00000308271 LAMA2P24043 3122 aaKnown RBP13.06□□□□□ -0.32
USP48-201ENST00000308271 VPREB1P12018 145 aa13.06□□□□□ -0.32
USP48-201ENST00000308271 CSNK1G2-AS1Q8NCQ2 148 aa13.06□□□□□ -0.32
USP48-201ENST00000308271 Q6ZRX8 168 aa13.05□□□□□ -0.32
USP48-201ENST00000308271 CFAP46Q8IYW2 2715 aa13.05□□□□□ -0.32
USP48-201ENST00000308271 H3BNG1 76 aa13.04□□□□□ -0.32
USP48-201ENST00000308271 PRLHP81277 87 aa13.03□□□□□ -0.32
USP48-201ENST00000308271 FAM104AQ969W3 186 aa13.03□□□□□ -0.32
USP48-201ENST00000308271 CFAP54Q96N23 3096 aa13.02□□□□□ -0.33
USP48-201ENST00000308271 TRBV7-4A0A0J9YYF1 115 aa13.01□□□□□ -0.33
USP48-201ENST00000308271 H3BPC8 53 aa13.01□□□□□ -0.33
USP48-201ENST00000308271 LINC00336Q6ZUF6 198 aa13□□□□□ -0.33
USP48-201ENST00000308271 IGHV6-1A0A0B4J1U7 121 aa12.99□□□□□ -0.33
USP48-201ENST00000308271 LINC00528Q8N1L1 170 aa12.99□□□□□ -0.33
USP48-201ENST00000308271 GIG44P09565 113 aaPredicted RBP12.98□□□□□ -0.33
USP48-201ENST00000308271 Q8NAQ8 132 aa12.96□□□□□ -0.33
USP48-201ENST00000308271 LINC00476Q8WZB0 136 aa12.96□□□□□ -0.33
USP48-201ENST00000308271 TEP1Q99973 2627 aaKnown RBP12.95□□□□□ -0.34
USP48-201ENST00000308271 Q6ZRP5 223 aa12.93□□□□□ -0.34
USP48-201ENST00000308271 LINC00612Q8N6U2 182 aa12.92□□□□□ -0.34
USP48-201ENST00000308271 ST20-AS1Q8NBB2 130 aa12.92□□□□□ -0.34
USP48-201ENST00000308271 PRR34Q9NV39 138 aa12.92□□□□□ -0.34
USP48-201ENST00000308271 TP53AIP1Q9HCN2 124 aa12.92□□□□□ -0.34
USP48-201ENST00000308271 KCNQ1DNQ9H478 68 aa12.91□□□□□ -0.34
USP48-201ENST00000308271 C19orf73Q9NVV2 129 aa12.91□□□□□ -0.34
USP48-201ENST00000308271 A0A096LNT2 108 aa12.89□□□□□ -0.35
USP48-201ENST00000308271 ZNF292O60281 2723 aa12.88□□□□□ -0.35
USP48-201ENST00000308271 WIPF1O43516 503 aa12.88□□□□□ -0.35
USP48-201ENST00000308271 K7EQZ3 153 aa12.87□□□□□ -0.35
USP48-201ENST00000308271 K7ERS5 55 aa12.86□□□□□ -0.35
USP48-201ENST00000308271 TRAV22A0A0B4J277 110 aa12.86□□□□□ -0.35
USP48-201ENST00000308271 M0R2N4 97 aa12.83□□□□□ -0.35
USP48-201ENST00000308271 Q8N377 158 aa12.81□□□□□ -0.36
USP48-201ENST00000308271 A8MUN3 132 aa12.8□□□□□ -0.36
USP48-201ENST00000308271 SERTAD4-AS1Q5TG53 156 aa12.8□□□□□ -0.36
USP48-201ENST00000308271 IGLV1-50A0A075B6I6 118 aa12.79□□□□□ -0.36
USP48-201ENST00000308271 CIRBP-AS1Q8TBR5 109 aa12.79□□□□□ -0.36
USP48-201ENST00000308271 TRIOO75962 3097 aa12.79□□□□□ -0.36
USP48-201ENST00000308271 ITPR3Q14573 2671 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 752 ms