RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 TTC32Q5I0X7 151 aa16.02■□□□□ 0.15
TRIM54-201ENST00000296098 ANK2Q01484 3957 aa16.01■□□□□ 0.15
TRIM54-201ENST00000296098 ORMDL1Q9P0S3 153 aa16.01■□□□□ 0.15
TRIM54-201ENST00000296098 SLPIP03973 132 aa16■□□□□ 0.15
TRIM54-201ENST00000296098 GAGE2BQ13066 116 aa15.99■□□□□ 0.15
TRIM54-201ENST00000296098 GAGE2EQ4V326 116 aa15.99■□□□□ 0.15
TRIM54-201ENST00000296098 LINC00167Q96N53 147 aa15.99■□□□□ 0.15
TRIM54-201ENST00000296098 CAMK2N2Q96S95 79 aa15.99■□□□□ 0.15
TRIM54-201ENST00000296098 GAGE2DQ9UEU5 116 aa15.99■□□□□ 0.15
TRIM54-201ENST00000296098 A0A1B0GV72 72 aa15.99■□□□□ 0.15
TRIM54-201ENST00000296098 C1orf43Q9BWL3 253 aa15.99■□□□□ 0.15
TRIM54-201ENST00000296098 C6orf99Q4VX62 202 aa15.98■□□□□ 0.15
TRIM54-201ENST00000296098 PRB2P02812 416 aaPredicted RBP15.97■□□□□ 0.15
TRIM54-201ENST00000296098 Q8N814 137 aa15.97■□□□□ 0.15
TRIM54-201ENST00000296098 C15orf56Q8N910 161 aa15.97■□□□□ 0.15
TRIM54-201ENST00000296098 RPL18AQ02543 176 aaKnown RBP15.96■□□□□ 0.15
TRIM54-201ENST00000296098 C9orf129Q5T035 196 aaKnown RBP15.96■□□□□ 0.15
TRIM54-201ENST00000296098 Q6Q795 121 aa15.96■□□□□ 0.15
TRIM54-201ENST00000296098 OBSCN-AS1Q96MR7 158 aa15.96■□□□□ 0.15
TRIM54-201ENST00000296098 BAHCC1Q9P281 2608 aa15.96■□□□□ 0.15
TRIM54-201ENST00000296098 TRAV10A0A0B4J240 114 aa15.95■□□□□ 0.14
TRIM54-201ENST00000296098 IGLV6-57P01721 117 aa15.95■□□□□ 0.14
TRIM54-201ENST00000296098 GAGE2AQ6NT46 116 aa15.94■□□□□ 0.14
TRIM54-201ENST00000296098 TM2D3Q9BRN9 247 aa15.94■□□□□ 0.14
TRIM54-201ENST00000296098 XAGE1AQ9HD64 81 aa15.94■□□□□ 0.14
TRIM54-201ENST00000296098 C2orf48Q96LS8 159 aa15.94■□□□□ 0.14
TRIM54-201ENST00000296098 IGKV2D-24A0A075B6R9 120 aa15.93■□□□□ 0.14
TRIM54-201ENST00000296098 C14orf132Q9NPU4 83 aa15.93■□□□□ 0.14
TRIM54-201ENST00000296098 Q6ZRU5 148 aa15.92■□□□□ 0.14
TRIM54-201ENST00000296098 DNAH10OSP0CZ25 163 aa15.92■□□□□ 0.14
TRIM54-201ENST00000296098 K7EIL1 84 aa15.9■□□□□ 0.14
TRIM54-201ENST00000296098 SMCR5Q8TEV8 140 aa15.9■□□□□ 0.14
TRIM54-201ENST00000296098 LINC00575Q6W349 94 aa15.89■□□□□ 0.13
TRIM54-201ENST00000296098 SDIM1Q6ZPB5 146 aa15.88■□□□□ 0.13
TRIM54-201ENST00000296098 MRAPQ8TCY5 172 aa15.88■□□□□ 0.13
TRIM54-201ENST00000296098 TRBV10-3A0A0K0K1G6 114 aa15.87■□□□□ 0.13
TRIM54-201ENST00000296098 TRBV7-7A0A0K0K1E9 115 aa15.87■□□□□ 0.13
TRIM54-201ENST00000296098 LINC00643Q86TS7 51 aa15.87■□□□□ 0.13
TRIM54-201ENST00000296098 NDUFC2-KCTD14E9PQ53 114 aa15.86■□□□□ 0.13
TRIM54-201ENST00000296098 F8WDY8 70 aa15.86■□□□□ 0.13
TRIM54-201ENST00000296098 TMEM256-PLSCR3K7ERE1 68 aa15.86■□□□□ 0.13
TRIM54-201ENST00000296098 NOTCH1P46531 2555 aa15.86■□□□□ 0.13
TRIM54-201ENST00000296098 TRAV23DV6A0A075B6W5 121 aa15.85■□□□□ 0.13
TRIM54-201ENST00000296098 ANAPC13Q9BS18 74 aa15.85■□□□□ 0.13
TRIM54-201ENST00000296098 LINC00588Q9Y4M8 146 aa15.84■□□□□ 0.13
TRIM54-201ENST00000296098 VPREB1P12018 145 aa15.84■□□□□ 0.13
TRIM54-201ENST00000296098 COL6A5A8TX70 2615 aa15.83■□□□□ 0.12
TRIM54-201ENST00000296098 hADV29S1A0JD25 119 aa15.82■□□□□ 0.12
TRIM54-201ENST00000296098 NDUFV3P56181 108 aaKnown RBP15.82■□□□□ 0.12
TRIM54-201ENST00000296098 JMJD7-PLA2G4BH0Y9G9 81 aa15.82■□□□□ 0.12
TRIM54-201ENST00000296098 DIRC1Q969H9 104 aa15.82■□□□□ 0.12
TRIM54-201ENST00000296098 SYCNQ0VAF6 134 aa15.8■□□□□ 0.12
TRIM54-201ENST00000296098 IMUPQ9GZP8 106 aa15.78■□□□□ 0.12
TRIM54-201ENST00000296098 M0R378 163 aa15.78■□□□□ 0.12
TRIM54-201ENST00000296098 ZNF73O43830 326 aaPredicted RBP15.77■□□□□ 0.12
TRIM54-201ENST00000296098 Q6ZRP5 223 aa15.77■□□□□ 0.12
TRIM54-201ENST00000296098 CCKP06307 115 aa15.75■□□□□ 0.11
TRIM54-201ENST00000296098 NHLRC4P0CG21 123 aaPredicted RBP15.73■□□□□ 0.11
TRIM54-201ENST00000296098 NBEAL1Q6ZS30 2694 aa15.73■□□□□ 0.11
TRIM54-201ENST00000296098 COX7BP24311 80 aa15.73■□□□□ 0.11
TRIM54-201ENST00000296098 TRBV7-6A0A0J9YX20 115 aa15.72■□□□□ 0.11
TRIM54-201ENST00000296098 LINC00846Q9NV44 126 aa15.72■□□□□ 0.11
TRIM54-201ENST00000296098 ELOF1P60002 83 aaKnown RBP15.72■□□□□ 0.11
TRIM54-201ENST00000296098 Q6ZQY7 126 aa15.72■□□□□ 0.11
TRIM54-201ENST00000296098 RMI2Q96E14 147 aa15.71■□□□□ 0.11
TRIM54-201ENST00000296098 HUWE1Q7Z6Z7 4374 aaKnown RBP15.7■□□□□ 0.1
TRIM54-201ENST00000296098 UPK3BQ9BT76 320 aa15.7■□□□□ 0.1
TRIM54-201ENST00000296098 USP17L23D6RBM5 183 aa15.69■□□□□ 0.1
TRIM54-201ENST00000296098 H3BQ85 93 aa15.68■□□□□ 0.1
TRIM54-201ENST00000296098 CASC10Q5T4H9 136 aa15.67■□□□□ 0.1
TRIM54-201ENST00000296098 TLX1NBP0CAT3 122 aa15.66■□□□□ 0.1
TRIM54-201ENST00000296098 LAMTOR3Q9UHA4 124 aa15.66■□□□□ 0.1
TRIM54-201ENST00000296098 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP15.65■□□□□ 0.1
TRIM54-201ENST00000296098 FAM236AA0A1B0GUQ0 79 aa15.65■□□□□ 0.1
TRIM54-201ENST00000296098 FAM236BA0A1B0GV22 79 aa15.65■□□□□ 0.1
TRIM54-201ENST00000296098 Q6JHZ5 121 aa15.65■□□□□ 0.1
TRIM54-201ENST00000296098 RBM3P98179 157 aaKnown RBP15.64■□□□□ 0.09
TRIM54-201ENST00000296098 NKAPP1Q8N9T2 125 aa15.64■□□□□ 0.09
TRIM54-201ENST00000296098 SERTAD4-AS1Q5TG53 156 aa15.61■□□□□ 0.09
TRIM54-201ENST00000296098 LINC00528Q8N1L1 170 aa15.61■□□□□ 0.09
TRIM54-201ENST00000296098 LOC110117498A0A087WWA1 95 aa15.6■□□□□ 0.09
TRIM54-201ENST00000296098 GHRHP01286 108 aa15.6■□□□□ 0.09
TRIM54-201ENST00000296098 Q6ZQT0 140 aa15.6■□□□□ 0.09
TRIM54-201ENST00000296098 PLA2G2DQ9UNK4 145 aa15.58■□□□□ 0.09
TRIM54-201ENST00000296098 IGKV3D-7A0A0C4DH55 119 aa15.58■□□□□ 0.08
TRIM54-201ENST00000296098 C7orf33Q8WU49 177 aa15.58■□□□□ 0.08
TRIM54-201ENST00000296098 KCNQ1DNQ9H478 68 aa15.56■□□□□ 0.08
TRIM54-201ENST00000296098 DNAH1Q9P2D7 4330 aa15.56■□□□□ 0.08
TRIM54-201ENST00000296098 MGAM2Q2M2H8 2515 aa15.56■□□□□ 0.08
TRIM54-201ENST00000296098 DSCR8Q96T75 97 aa15.55■□□□□ 0.08
TRIM54-201ENST00000296098 CCDC179H3BU77 68 aa15.53■□□□□ 0.08
TRIM54-201ENST00000296098 IGLV5-37A0A075B6J1 123 aa15.52■□□□□ 0.08
TRIM54-201ENST00000296098 PDE6GP18545 87 aa15.52■□□□□ 0.08
TRIM54-201ENST00000296098 MDFIQ99750 246 aa15.52■□□□□ 0.08
TRIM54-201ENST00000296098 ATP5EP2Q5VTU8 51 aa15.51■□□□□ 0.07
TRIM54-201ENST00000296098 UBL5Q9BZL1 73 aa15.5■□□□□ 0.07
TRIM54-201ENST00000296098 FAM168BA1KXE4 195 aa15.5■□□□□ 0.07
TRIM54-201ENST00000296098 LOC107984640A0A0U1RRK4 108 aa15.48■□□□□ 0.07
TRIM54-201ENST00000296098 HIST1H4AP62805 103 aaKnown RBP15.48■□□□□ 0.07
TRIM54-201ENST00000296098 KRTAP1-5Q9BYS1 174 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms