RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 DPH3Q96FX2 82 aa18.66■□□□□ 0.58
CBX4-201ENST00000269397 RBM3P98179 157 aaKnown RBP18.65■□□□□ 0.58
CBX4-201ENST00000269397 SPAG11BQ08648 103 aa18.64■□□□□ 0.57
CBX4-201ENST00000269397 ATP5EP2Q5VTU8 51 aa18.63■□□□□ 0.57
CBX4-201ENST00000269397 LYPD5Q6UWN5 251 aa18.63■□□□□ 0.57
CBX4-201ENST00000269397 Q6ZQT0 140 aa18.63■□□□□ 0.57
CBX4-201ENST00000269397 HTN3P15516 51 aa18.62■□□□□ 0.57
CBX4-201ENST00000269397 CYSRT1A8MQ03 144 aa18.62■□□□□ 0.57
CBX4-201ENST00000269397 OXTP01178 125 aa18.61■□□□□ 0.57
CBX4-201ENST00000269397 RPS28P62857 69 aaKnown RBP18.6■□□□□ 0.57
CBX4-201ENST00000269397 SMIM9A6NGZ8 99 aa18.6■□□□□ 0.57
CBX4-201ENST00000269397 Q6ZQY7 126 aa18.59■□□□□ 0.57
CBX4-201ENST00000269397 CELA1Q9UNI1 258 aa18.59■□□□□ 0.57
CBX4-201ENST00000269397 DAD1P61803 113 aa18.59■□□□□ 0.57
CBX4-201ENST00000269397 LYRM9A8MSI8 78 aa18.58■□□□□ 0.57
CBX4-201ENST00000269397 ZNF561-AS1K7EIQ3 104 aa18.58■□□□□ 0.56
CBX4-201ENST00000269397 C20orf197Q8N268 126 aa18.57■□□□□ 0.56
CBX4-201ENST00000269397 XAGE1AQ9HD64 81 aa18.57■□□□□ 0.56
CBX4-201ENST00000269397 KLK12Q9UKR0 248 aa18.57■□□□□ 0.56
CBX4-201ENST00000269397 HAMPP81172 84 aa18.57■□□□□ 0.56
CBX4-201ENST00000269397 SMR3AQ99954 134 aa18.56■□□□□ 0.56
CBX4-201ENST00000269397 IGLV6-57P01721 117 aa18.53■□□□□ 0.56
CBX4-201ENST00000269397 TENM1Q9UKZ4 2725 aa18.53■□□□□ 0.56
CBX4-201ENST00000269397 TRBV10-3A0A0K0K1G6 114 aa18.53■□□□□ 0.56
CBX4-201ENST00000269397 LINC01547P58512 204 aaPredicted RBP18.52■□□□□ 0.55
CBX4-201ENST00000269397 LOC110117498A0A087WWA1 95 aa18.5■□□□□ 0.55
CBX4-201ENST00000269397 Q6ZVQ6 151 aa18.5■□□□□ 0.55
CBX4-201ENST00000269397 A0A0J9YWU9 116 aa18.49■□□□□ 0.55
CBX4-201ENST00000269397 IGHV4-30-4P0DP06 118 aa18.49■□□□□ 0.55
CBX4-201ENST00000269397 C6orf48Q9UBA6 75 aa18.46■□□□□ 0.55
CBX4-201ENST00000269397 FASNP49327 2511 aaKnown RBP18.46■□□□□ 0.55
CBX4-201ENST00000269397 HIVEP1P15822 2718 aa18.45■□□□□ 0.54
CBX4-201ENST00000269397 TRAV10A0A0B4J240 114 aa18.45■□□□□ 0.54
CBX4-201ENST00000269397 SCXQ7RTU7 201 aa18.44■□□□□ 0.54
CBX4-201ENST00000269397 LELP1Q5T871 98 aa18.43■□□□□ 0.54
CBX4-201ENST00000269397 DIRC1Q969H9 104 aa18.42■□□□□ 0.54
CBX4-201ENST00000269397 Q8NAQ8 132 aa18.41■□□□□ 0.54
CBX4-201ENST00000269397 UNC79Q9P2D8 2635 aa18.41■□□□□ 0.54
CBX4-201ENST00000269397 MUC7Q8TAX7 377 aa18.41■□□□□ 0.54
CBX4-201ENST00000269397 HELZ2Q9BYK8 2649 aaKnown RBP18.4■□□□□ 0.54
CBX4-201ENST00000269397 PRR34Q9NV39 138 aa18.4■□□□□ 0.54
CBX4-201ENST00000269397 HIGD2BQ4VC39 106 aa18.4■□□□□ 0.54
CBX4-201ENST00000269397 C5orf47Q569G3 176 aa18.39■□□□□ 0.54
CBX4-201ENST00000269397 TRRAPQ9Y4A5 3859 aa18.39■□□□□ 0.53
CBX4-201ENST00000269397 NOTCH2Q04721 2471 aa18.39■□□□□ 0.53
CBX4-201ENST00000269397 ZNF73O43830 326 aaPredicted RBP18.38■□□□□ 0.53
CBX4-201ENST00000269397 C4orf26Q17RF5 130 aa18.38■□□□□ 0.53
CBX4-201ENST00000269397 APOC4P55056 127 aa18.37■□□□□ 0.53
CBX4-201ENST00000269397 C9orf66Q5T8R8 295 aa18.36■□□□□ 0.53
CBX4-201ENST00000269397 SNURFQ9Y675 71 aa18.36■□□□□ 0.53
CBX4-201ENST00000269397 ATRQ13535 2644 aa18.35■□□□□ 0.53
CBX4-201ENST00000269397 TRAV7A0A075B6U4 112 aa18.35■□□□□ 0.53
CBX4-201ENST00000269397 SPART-AS1P0CW21 52 aa18.35■□□□□ 0.53
CBX4-201ENST00000269397 COX7BP24311 80 aa18.35■□□□□ 0.53
CBX4-201ENST00000269397 PKD1L1Q8TDX9 2849 aa18.34■□□□□ 0.53
CBX4-201ENST00000269397 GVQW2A0A096LPI5 108 aaPredicted RBP18.32■□□□□ 0.52
CBX4-201ENST00000269397 NDUFC2-KCTD14E9PQ53 114 aa18.31■□□□□ 0.52
CBX4-201ENST00000269397 H7BZZ5 65 aa18.31■□□□□ 0.52
CBX4-201ENST00000269397 FAM236DA0A1B0GTK5 79 aa18.31■□□□□ 0.52
CBX4-201ENST00000269397 FAM236CP0DP71 79 aa18.31■□□□□ 0.52
CBX4-201ENST00000269397 Q5XG85 94 aa18.3■□□□□ 0.52
CBX4-201ENST00000269397 TRBV7-4A0A0J9YYF1 115 aa18.3■□□□□ 0.52
CBX4-201ENST00000269397 MIFP14174 115 aa18.3■□□□□ 0.52
CBX4-201ENST00000269397 PDE6GP18545 87 aa18.3■□□□□ 0.52
CBX4-201ENST00000269397 RMI2Q96E14 147 aa18.29■□□□□ 0.52
CBX4-201ENST00000269397 CAMK2N2Q96S95 79 aa18.29■□□□□ 0.52
CBX4-201ENST00000269397 ELOF1P60002 83 aaKnown RBP18.29■□□□□ 0.52
CBX4-201ENST00000269397 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP18.29■□□□□ 0.52
CBX4-201ENST00000269397 CXCL6P80162 114 aa18.28■□□□□ 0.52
CBX4-201ENST00000269397 HRCT1Q6UXD1 115 aa18.28■□□□□ 0.52
CBX4-201ENST00000269397 WFDC10BQ8IUB3 73 aa18.27■□□□□ 0.52
CBX4-201ENST00000269397 TEP1Q99973 2627 aaKnown RBP18.26■□□□□ 0.51
CBX4-201ENST00000269397 HECTD1Q9ULT8 2610 aa18.26■□□□□ 0.51
CBX4-201ENST00000269397 OTOGQ6ZRI0 2925 aa18.26■□□□□ 0.51
CBX4-201ENST00000269397 VPREB1P12018 145 aa18.26■□□□□ 0.51
CBX4-201ENST00000269397 TM2D3Q9BRN9 247 aa18.25■□□□□ 0.51
CBX4-201ENST00000269397 Q6ZRU5 148 aa18.24■□□□□ 0.51
CBX4-201ENST00000269397 Q8N9L7 120 aa18.22■□□□□ 0.51
CBX4-201ENST00000269397 H3BQ85 93 aa18.21■□□□□ 0.51
CBX4-201ENST00000269397 BCE1O60756 84 aa18.2■□□□□ 0.5
CBX4-201ENST00000269397 KLKP1Q107X0 134 aa18.19■□□□□ 0.5
CBX4-201ENST00000269397 F8WEM9 126 aa18.18■□□□□ 0.5
CBX4-201ENST00000269397 M0R378 163 aa18.16■□□□□ 0.5
CBX4-201ENST00000269397 LINC00528Q8N1L1 170 aa18.16■□□□□ 0.5
CBX4-201ENST00000269397 NSD1Q96L73 2696 aaPredicted RBP18.14■□□□□ 0.49
CBX4-201ENST00000269397 TRBV7-6A0A0J9YX20 115 aa18.14■□□□□ 0.49
CBX4-201ENST00000269397 C15orf56Q8N910 161 aa18.14■□□□□ 0.49
CBX4-201ENST00000269397 EGFEM1PQ0D2K5 195 aa18.14■□□□□ 0.49
CBX4-201ENST00000269397 KRTAP26-1Q6PEX3 210 aa18.13■□□□□ 0.49
CBX4-201ENST00000269397 J3QKU1 62 aa18.12■□□□□ 0.49
CBX4-201ENST00000269397 KPRPQ5T749 579 aaPredicted RBP18.12■□□□□ 0.49
CBX4-201ENST00000269397 RETNQ9HD89 108 aa18.12■□□□□ 0.49
CBX4-201ENST00000269397 Q6ZRP5 223 aa18.11■□□□□ 0.49
CBX4-201ENST00000269397 DEFB105AQ8NG35 78 aa18.11■□□□□ 0.49
CBX4-201ENST00000269397 SERP1Q9Y6X1 66 aa18.1■□□□□ 0.49
CBX4-201ENST00000269397 INAFM1C9JVW0 142 aa18.09■□□□□ 0.49
CBX4-201ENST00000269397 C3orf84H3BNL1 204 aa18.09■□□□□ 0.49
CBX4-201ENST00000269397 BPY2O14599 106 aa18.08■□□□□ 0.49
CBX4-201ENST00000269397 NREPQ16612 68 aa18.08■□□□□ 0.49
CBX4-201ENST00000269397 Q6ZTC4 211 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms