RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 HIST1H2BJP06899 126 aa13.75□□□□□ -0.21
LSM4-201ENST00000252816 SMIM13P0DJ93 91 aa13.75□□□□□ -0.21
LSM4-201ENST00000252816 HIST1H2BOP23527 126 aa13.75□□□□□ -0.21
LSM4-201ENST00000252816 HIST1H2BBP33778 126 aa13.75□□□□□ -0.21
LSM4-201ENST00000252816 HIST1H2BDP58876 126 aa13.75□□□□□ -0.21
LSM4-201ENST00000252816 HIST1H2BCP62807 126 aa13.75□□□□□ -0.21
LSM4-201ENST00000252816 RPL24P83731 157 aaKnown RBP13.75□□□□□ -0.21
LSM4-201ENST00000252816 HIST2H2BEQ16778 126 aa13.75□□□□□ -0.21
LSM4-201ENST00000252816 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.75□□□□□ -0.21
LSM4-201ENST00000252816 HIST1H2BHQ93079 126 aa13.75□□□□□ -0.21
LSM4-201ENST00000252816 HIST1H2BNQ99877 126 aa13.75□□□□□ -0.21
LSM4-201ENST00000252816 HIST1H2BMQ99879 126 aa13.75□□□□□ -0.21
LSM4-201ENST00000252816 NDUFA12Q9UI09 145 aa13.75□□□□□ -0.21
LSM4-201ENST00000252816 PLNP26678 52 aa13.74□□□□□ -0.21
LSM4-201ENST00000252816 RPL28P46779 137 aaKnown RBP13.74□□□□□ -0.21
LSM4-201ENST00000252816 TSPEAR-AS2P59090 65 aa13.74□□□□□ -0.21
LSM4-201ENST00000252816 IGLV1-50A0A075B6I6 118 aa13.73□□□□□ -0.21
LSM4-201ENST00000252816 DPM2O94777 84 aa13.72□□□□□ -0.21
LSM4-201ENST00000252816 HERV-K104P63124 156 aa13.72□□□□□ -0.21
LSM4-201ENST00000252816 KRTAP13-1Q8IUC0 172 aa13.72□□□□□ -0.21
LSM4-201ENST00000252816 LEPROTO15243 131 aa13.71□□□□□ -0.21
LSM4-201ENST00000252816 MEIG1Q5JSS6 88 aa13.71□□□□□ -0.21
LSM4-201ENST00000252816 MAP1LC3CQ9BXW4 147 aa13.7□□□□□ -0.22
LSM4-201ENST00000252816 MYMXA0A1B0GTQ4 84 aa13.69□□□□□ -0.22
LSM4-201ENST00000252816 TMEM238C9JI98 176 aa13.69□□□□□ -0.22
LSM4-201ENST00000252816 IGKCP01834 107 aa13.69□□□□□ -0.22
LSM4-201ENST00000252816 MIR7-3HGQ8N6C7 128 aa13.69□□□□□ -0.22
LSM4-201ENST00000252816 UBE2AP49459 152 aa13.68□□□□□ -0.22
LSM4-201ENST00000252816 PLEKHB2Q96CS7 222 aa13.68□□□□□ -0.22
LSM4-201ENST00000252816 ATP6V1G1O75348 118 aa13.67□□□□□ -0.22
LSM4-201ENST00000252816 TMEM126AQ9H061 195 aa13.67□□□□□ -0.22
LSM4-201ENST00000252816 J3QQQ9 107 aa13.66□□□□□ -0.22
LSM4-201ENST00000252816 LINC00587B1AMM8 73 aa13.65□□□□□ -0.22
LSM4-201ENST00000252816 M0R378 163 aa13.65□□□□□ -0.22
LSM4-201ENST00000252816 HERVK_113P61574 105 aa13.65□□□□□ -0.22
LSM4-201ENST00000252816 BOD1L2Q8IYS8 172 aa13.65□□□□□ -0.22
LSM4-201ENST00000252816 UBR4Q5T4S7 5183 aa13.64□□□□□ -0.23
LSM4-201ENST00000252816 RPL13AP40429 203 aaKnown RBP13.64□□□□□ -0.23
LSM4-201ENST00000252816 LRP2P98164 4655 aa13.63□□□□□ -0.23
LSM4-201ENST00000252816 SYS1-DBNDD2H3BUS1 97 aa13.63□□□□□ -0.23
LSM4-201ENST00000252816 PRLHP81277 87 aa13.63□□□□□ -0.23
LSM4-201ENST00000252816 FAM19A1Q7Z5A9 133 aa13.62□□□□□ -0.23
LSM4-201ENST00000252816 A0A087X002 238 aa13.61□□□□□ -0.23
LSM4-201ENST00000252816 DAND5Q8N907 189 aa13.61□□□□□ -0.23
LSM4-201ENST00000252816 NCR3O14931 201 aa13.6□□□□□ -0.23
LSM4-201ENST00000252816 LGALS3P17931 250 aaKnown RBP13.6□□□□□ -0.23
LSM4-201ENST00000252816 NMUP48645 174 aa13.6□□□□□ -0.23
LSM4-201ENST00000252816 ANAPC11Q9NYG5 84 aa13.6□□□□□ -0.23
LSM4-201ENST00000252816 COA6Q5JTJ3 125 aaKnown RBP13.58□□□□□ -0.24
LSM4-201ENST00000252816 E9PLD3 99 aa13.57□□□□□ -0.24
LSM4-201ENST00000252816 LINC01545Q5VT33 79 aa13.57□□□□□ -0.24
LSM4-201ENST00000252816 IGKV2D-26A0A0A0MRZ7 120 aa13.56□□□□□ -0.24
LSM4-201ENST00000252816 LOC107984156A0A0G2JMH3 177 aa13.56□□□□□ -0.24
LSM4-201ENST00000252816 ARL17AQ8IVW1 177 aa13.56□□□□□ -0.24
LSM4-201ENST00000252816 CRYGAP11844 174 aa13.55□□□□□ -0.24
LSM4-201ENST00000252816 PET117Q6UWS5 81 aa13.54□□□□□ -0.24
LSM4-201ENST00000252816 C3orf79P0CE67 100 aa13.53□□□□□ -0.24
LSM4-201ENST00000252816 A0A0J9YXY3 114 aa13.52□□□□□ -0.25
LSM4-201ENST00000252816 TRBV10-3A0A0K0K1G6 114 aa13.52□□□□□ -0.25
LSM4-201ENST00000252816 PRYO14603 147 aa13.52□□□□□ -0.25
LSM4-201ENST00000252816 KRTAP13-2Q52LG2 175 aa13.52□□□□□ -0.25
LSM4-201ENST00000252816 KCNQ1DNQ9H478 68 aa13.52□□□□□ -0.25
LSM4-201ENST00000252816 SPRR1AP35321 89 aa13.5□□□□□ -0.25
LSM4-201ENST00000252816 FAM229BQ4G0N7 80 aa13.5□□□□□ -0.25
LSM4-201ENST00000252816 ADAMTSL4-AS1Q5T5F5 129 aa13.5□□□□□ -0.25
LSM4-201ENST00000252816 TYMSOSQ8TAI1 123 aa13.5□□□□□ -0.25
LSM4-201ENST00000252816 HIGD2AQ9BW72 106 aa13.5□□□□□ -0.25
LSM4-201ENST00000252816 KRTAP4-16G5E9R7 235 aaPredicted RBP13.48□□□□□ -0.25
LSM4-201ENST00000252816 EIF4EBP3O60516 100 aaPredicted RBP13.48□□□□□ -0.25
LSM4-201ENST00000252816 SOSTDC1Q6X4U4 206 aa13.48□□□□□ -0.25
LSM4-201ENST00000252816 KRTDAPP60985 99 aa13.47□□□□□ -0.25
LSM4-201ENST00000252816 LINC00337Q8N6G1 96 aa13.47□□□□□ -0.25
LSM4-201ENST00000252816 MIEN1Q9BRT3 115 aa13.47□□□□□ -0.25
LSM4-201ENST00000252816 TRBV10-2A0A0K0K1G8 114 aa13.46□□□□□ -0.25
LSM4-201ENST00000252816 LPAP08519 4548 aa13.45□□□□□ -0.26
LSM4-201ENST00000252816 NPC2P61916 151 aa13.45□□□□□ -0.26
LSM4-201ENST00000252816 SPANXB1Q9NS25 103 aaPredicted RBP13.45□□□□□ -0.26
LSM4-201ENST00000252816 NDUFC2O95298 119 aa13.44□□□□□ -0.26
LSM4-201ENST00000252816 TSPAN13O95857 204 aa13.44□□□□□ -0.26
LSM4-201ENST00000252816 DDTP30046 118 aa13.44□□□□□ -0.26
LSM4-201ENST00000252816 LITAFQ99732 161 aa13.44□□□□□ -0.26
LSM4-201ENST00000252816 TTTY13Q9BZ97 58 aa13.43□□□□□ -0.26
LSM4-201ENST00000252816 ETDCA0A1B0GVM5 59 aa13.42□□□□□ -0.26
LSM4-201ENST00000252816 SPRR4Q96PI1 79 aa13.41□□□□□ -0.26
LSM4-201ENST00000252816 ZNF815PA8K554 130 aa13.4□□□□□ -0.26
LSM4-201ENST00000252816 IGLV6-57P01721 117 aa13.39□□□□□ -0.27
LSM4-201ENST00000252816 S100A1P23297 94 aa13.39□□□□□ -0.27
LSM4-201ENST00000252816 SMCR5Q8TEV8 140 aa13.39□□□□□ -0.27
LSM4-201ENST00000252816 B5MCH6 92 aa13.38□□□□□ -0.27
LSM4-201ENST00000252816 TIMM17BO60830 172 aa13.38□□□□□ -0.27
LSM4-201ENST00000252816 S100A12P80511 92 aa13.38□□□□□ -0.27
LSM4-201ENST00000252816 C3orf22Q8N5N4 141 aa13.38□□□□□ -0.27
LSM4-201ENST00000252816 PRR4Q16378 134 aa13.37□□□□□ -0.27
LSM4-201ENST00000252816 S100A7L2Q5SY68 101 aa13.37□□□□□ -0.27
LSM4-201ENST00000252816 LINC00308Q8TCZ7 52 aa13.37□□□□□ -0.27
LSM4-201ENST00000252816 C20orf202A1L168 122 aa13.36□□□□□ -0.27
LSM4-201ENST00000252816 ANKRD39Q53RE8 183 aa13.35□□□□□ -0.27
LSM4-201ENST00000252816 ATOH7Q8N100 152 aa13.35□□□□□ -0.27
LSM4-201ENST00000252816 LINC00304Q8N9R0 145 aa13.35□□□□□ -0.27
LSM4-201ENST00000252816 ZNF706Q9Y5V0 76 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms