RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 IGHV4-30-4P0DP06 118 aa11.14□□□□□ -0.63
HOXD3-201ENST00000249440 KLK12Q9UKR0 248 aa11.14□□□□□ -0.63
HOXD3-201ENST00000249440 UNQ6190/PRO20217Q6UXQ8 127 aa11.13□□□□□ -0.63
HOXD3-201ENST00000249440 WFDC9Q8NEX5 89 aa11.13□□□□□ -0.63
HOXD3-201ENST00000249440 LINC00846Q9NV44 126 aa11.13□□□□□ -0.63
HOXD3-201ENST00000249440 A0A0J9YWU9 116 aa11.13□□□□□ -0.63
HOXD3-201ENST00000249440 C6orf99Q4VX62 202 aa11.13□□□□□ -0.63
HOXD3-201ENST00000249440 C10orf25Q5T742 122 aa11.13□□□□□ -0.63
HOXD3-201ENST00000249440 C6orf223Q8N319 242 aa11.13□□□□□ -0.63
HOXD3-201ENST00000249440 Q8NDZ9 215 aa11.12□□□□□ -0.63
HOXD3-201ENST00000249440 CCKP06307 115 aa11.11□□□□□ -0.63
HOXD3-201ENST00000249440 WIPF1O43516 503 aa11.1□□□□□ -0.63
HOXD3-201ENST00000249440 Q6JHZ5 121 aa11.1□□□□□ -0.63
HOXD3-201ENST00000249440 ENHOQ6UWT2 76 aa11.1□□□□□ -0.63
HOXD3-201ENST00000249440 LYPD5Q6UWN5 251 aa11.09□□□□□ -0.63
HOXD3-201ENST00000249440 LINC00526Q96FQ7 95 aa11.09□□□□□ -0.63
HOXD3-201ENST00000249440 ANK2Q01484 3957 aa11.08□□□□□ -0.64
HOXD3-201ENST00000249440 GVQW2A0A096LPI5 108 aaPredicted RBP11.07□□□□□ -0.64
HOXD3-201ENST00000249440 LINC00575Q6W349 94 aa11.07□□□□□ -0.64
HOXD3-201ENST00000249440 HIST1H4AP62805 103 aaKnown RBP11.06□□□□□ -0.64
HOXD3-201ENST00000249440 IGKV3D-7A0A0C4DH55 119 aa11.06□□□□□ -0.64
HOXD3-201ENST00000249440 UQCRQO14949 82 aa11.06□□□□□ -0.64
HOXD3-201ENST00000249440 C3orf22Q8N5N4 141 aa11.06□□□□□ -0.64
HOXD3-201ENST00000249440 hADV29S1A0JD25 119 aa11.05□□□□□ -0.64
HOXD3-201ENST00000249440 IGLV6-57P01721 117 aa11.05□□□□□ -0.64
HOXD3-201ENST00000249440 ATOX1O00244 68 aa11.04□□□□□ -0.64
HOXD3-201ENST00000249440 RPL18AQ02543 176 aaKnown RBP11.04□□□□□ -0.64
HOXD3-201ENST00000249440 DNHD1Q96M86 4753 aa11.04□□□□□ -0.64
HOXD3-201ENST00000249440 C6orf48Q9UBA6 75 aa11.03□□□□□ -0.64
HOXD3-201ENST00000249440 H3BNG1 76 aa11.02□□□□□ -0.64
HOXD3-201ENST00000249440 C9orf153Q5TBE3 101 aa11.02□□□□□ -0.65
HOXD3-201ENST00000249440 COX7CP15954 63 aa11□□□□□ -0.65
HOXD3-201ENST00000249440 KPRPQ5T749 579 aaPredicted RBP11□□□□□ -0.65
HOXD3-201ENST00000249440 ZNF561-AS1K7EIQ3 104 aa11□□□□□ -0.65
HOXD3-201ENST00000249440 RBM3P98179 157 aaKnown RBP11□□□□□ -0.65
HOXD3-201ENST00000249440 WFDC10BQ8IUB3 73 aa11□□□□□ -0.65
HOXD3-201ENST00000249440 XAGE1AQ9HD64 81 aa10.99□□□□□ -0.65
HOXD3-201ENST00000249440 TRAV23DV6A0A075B6W5 121 aa10.98□□□□□ -0.65
HOXD3-201ENST00000249440 TRBV10-3A0A0K0K1G6 114 aa10.98□□□□□ -0.65
HOXD3-201ENST00000249440 H3BQ85 93 aa10.98□□□□□ -0.65
HOXD3-201ENST00000249440 ATP5EP2Q5VTU8 51 aa10.98□□□□□ -0.65
HOXD3-201ENST00000249440 C3orf56Q8N813 242 aa10.98□□□□□ -0.65
HOXD3-201ENST00000249440 C2orf48Q96LS8 159 aa10.97□□□□□ -0.65
HOXD3-201ENST00000249440 CAMK2N2Q96S95 79 aa10.97□□□□□ -0.65
HOXD3-201ENST00000249440 LAMTOR3Q9UHA4 124 aa10.97□□□□□ -0.65
HOXD3-201ENST00000249440 A0A087WVE0 104 aa10.97□□□□□ -0.65
HOXD3-201ENST00000249440 DIRC1Q969H9 104 aa10.97□□□□□ -0.65
HOXD3-201ENST00000249440 MDFIQ99750 246 aa10.97□□□□□ -0.65
HOXD3-201ENST00000249440 OXLD1Q5BKU9 147 aa10.96□□□□□ -0.65
HOXD3-201ENST00000249440 UBL5Q9BZL1 73 aa10.96□□□□□ -0.65
HOXD3-201ENST00000249440 HIGD2BQ4VC39 106 aa10.96□□□□□ -0.66
HOXD3-201ENST00000249440 Q6ZQY7 126 aa10.96□□□□□ -0.66
HOXD3-201ENST00000249440 RETNQ9HD89 108 aa10.96□□□□□ -0.66
HOXD3-201ENST00000249440 Q6ZTC4 211 aa10.95□□□□□ -0.66
HOXD3-201ENST00000249440 NOTCH1P46531 2555 aa10.95□□□□□ -0.66
HOXD3-201ENST00000249440 LOC110117498A0A087WWA1 95 aa10.95□□□□□ -0.66
HOXD3-201ENST00000249440 Q6ZQT0 140 aa10.95□□□□□ -0.66
HOXD3-201ENST00000249440 EGFEM1PQ0D2K5 195 aa10.94□□□□□ -0.66
HOXD3-201ENST00000249440 KRTAP26-1Q6PEX3 210 aa10.94□□□□□ -0.66
HOXD3-201ENST00000249440 ZNF73O43830 326 aaPredicted RBP10.93□□□□□ -0.66
HOXD3-201ENST00000249440 USP17L23D6RBM5 183 aa10.93□□□□□ -0.66
HOXD3-201ENST00000249440 KRTAP10-11P60412 298 aa10.93□□□□□ -0.66
HOXD3-201ENST00000249440 GHRHP01286 108 aa10.92□□□□□ -0.66
HOXD3-201ENST00000249440 CRYGAP11844 174 aa10.92□□□□□ -0.66
HOXD3-201ENST00000249440 DSCR8Q96T75 97 aa10.92□□□□□ -0.66
HOXD3-201ENST00000249440 NBEAL1Q6ZS30 2694 aa10.92□□□□□ -0.66
HOXD3-201ENST00000249440 TRBV7-6A0A0J9YX20 115 aa10.91□□□□□ -0.66
HOXD3-201ENST00000249440 VPREB1P12018 145 aa10.91□□□□□ -0.66
HOXD3-201ENST00000249440 PDE6GP18545 87 aa10.91□□□□□ -0.66
HOXD3-201ENST00000249440 COX7BP24311 80 aa10.91□□□□□ -0.66
HOXD3-201ENST00000249440 ESRGQ1W209 222 aa10.91□□□□□ -0.66
HOXD3-201ENST00000249440 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.91□□□□□ -0.66
HOXD3-201ENST00000249440 Q6ZRU5 148 aa10.91□□□□□ -0.66
HOXD3-201ENST00000249440 SMIM20Q8N5G0 67 aa10.91□□□□□ -0.66
HOXD3-201ENST00000249440 SERP2Q8N6R1 65 aa10.91□□□□□ -0.66
HOXD3-201ENST00000249440 ELOF1P60002 83 aaKnown RBP10.9□□□□□ -0.66
HOXD3-201ENST00000249440 C15orf56Q8N910 161 aa10.9□□□□□ -0.66
HOXD3-201ENST00000249440 NDUFC2-KCTD14E9PQ53 114 aa10.9□□□□□ -0.67
HOXD3-201ENST00000249440 C1orf43Q9BWL3 253 aa10.9□□□□□ -0.67
HOXD3-201ENST00000249440 M0R378 163 aa10.89□□□□□ -0.67
HOXD3-201ENST00000249440 DNAH3Q8TD57 4116 aa10.89□□□□□ -0.67
HOXD3-201ENST00000249440 MGAM2Q2M2H8 2515 aa10.87□□□□□ -0.67
HOXD3-201ENST00000249440 LINC01556Q5JQF7 62 aa10.87□□□□□ -0.67
HOXD3-201ENST00000249440 DEFB131BA0A096LNP1 70 aa10.85□□□□□ -0.67
HOXD3-201ENST00000249440 F8WDY8 70 aa10.85□□□□□ -0.67
HOXD3-201ENST00000249440 FAM19A1Q7Z5A9 133 aa10.85□□□□□ -0.67
HOXD3-201ENST00000249440 IGKV2D-24A0A075B6R9 120 aa10.85□□□□□ -0.67
HOXD3-201ENST00000249440 M0R2N4 97 aa10.84□□□□□ -0.67
HOXD3-201ENST00000249440 C11orf45Q8TAV5 145 aa10.84□□□□□ -0.67
HOXD3-201ENST00000249440 UPK3BQ9BT76 320 aa10.84□□□□□ -0.67
HOXD3-201ENST00000249440 Q6ZRP5 223 aa10.83□□□□□ -0.68
HOXD3-201ENST00000249440 TRBV7-4A0A0J9YYF1 115 aa10.82□□□□□ -0.68
HOXD3-201ENST00000249440 Q6ZVQ6 151 aa10.82□□□□□ -0.68
HOXD3-201ENST00000249440 LINC01547P58512 204 aaPredicted RBP10.81□□□□□ -0.68
HOXD3-201ENST00000249440 SYCNQ0VAF6 134 aa10.81□□□□□ -0.68
HOXD3-201ENST00000249440 LINC00528Q8N1L1 170 aa10.81□□□□□ -0.68
HOXD3-201ENST00000249440 HAMPP81172 84 aa10.8□□□□□ -0.68
HOXD3-201ENST00000249440 TENM3Q9P273 2699 aa10.8□□□□□ -0.68
HOXD3-201ENST00000249440 DNAH10OSP0CZ25 163 aa10.78□□□□□ -0.68
HOXD3-201ENST00000249440 CXCL6P80162 114 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms