RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 LINC01600Q96MT4 127 aa15□□□□□ -0.01
CDX1-201ENST00000231656 C15orf56Q8N910 161 aa14.99□□□□□ -0.01
CDX1-201ENST00000231656 Q9HAA7 133 aa14.98□□□□□ -0.01
CDX1-201ENST00000231656 TRBV10-2A0A0K0K1G8 114 aa14.98□□□□□ -0.01
CDX1-201ENST00000231656 NDUFC2O95298 119 aa14.98□□□□□ -0.01
CDX1-201ENST00000231656 KRTAP1-5Q9BYS1 174 aa14.98□□□□□ -0.01
CDX1-201ENST00000231656 C6orf48Q9UBA6 75 aa14.98□□□□□ -0.01
CDX1-201ENST00000231656 TEN1Q86WV5 123 aa14.97□□□□□ -0.01
CDX1-201ENST00000231656 IGKV2D-24A0A075B6R9 120 aa14.96□□□□□ -0.01
CDX1-201ENST00000231656 HIGD2BQ4VC39 106 aa14.96□□□□□ -0.01
CDX1-201ENST00000231656 SMIM11BQ8TCY0 68 aa14.96□□□□□ -0.01
CDX1-201ENST00000231656 ANKRD29Q8N6D5 301 aa14.96□□□□□ -0.02
CDX1-201ENST00000231656 ZNF561-AS1K7EIQ3 104 aa14.94□□□□□ -0.02
CDX1-201ENST00000231656 PRR3P79522 188 aaKnown RBP14.93□□□□□ -0.02
CDX1-201ENST00000231656 Q8NDZ9 215 aa14.93□□□□□ -0.02
CDX1-201ENST00000231656 OR13C6PQ8NH95 151 aa14.92□□□□□ -0.02
CDX1-201ENST00000231656 C2orf48Q96LS8 159 aa14.92□□□□□ -0.02
CDX1-201ENST00000231656 CARD19Q96LW7 228 aa14.92□□□□□ -0.02
CDX1-201ENST00000231656 NBDYA0A0U1RRE5 68 aa14.91□□□□□ -0.02
CDX1-201ENST00000231656 TTC32Q5I0X7 151 aa14.91□□□□□ -0.02
CDX1-201ENST00000231656 CAMK2N2Q96S95 79 aa14.91□□□□□ -0.02
CDX1-201ENST00000231656 PPDPFLQ8WWR9 84 aa14.9□□□□□ -0.02
CDX1-201ENST00000231656 FAM218AQ96MZ4 157 aa14.9□□□□□ -0.02
CDX1-201ENST00000231656 H3BT86 120 aa14.9□□□□□ -0.02
CDX1-201ENST00000231656 J3QR89 54 aa14.9□□□□□ -0.02
CDX1-201ENST00000231656 KMT2AQ03164 3969 aa14.9□□□□□ -0.02
CDX1-201ENST00000231656 VPS25Q9BRG1 176 aa14.9□□□□□ -0.02
CDX1-201ENST00000231656 RMI2Q96E14 147 aa14.89□□□□□ -0.03
CDX1-201ENST00000231656 TRACP01848 142 aa14.88□□□□□ -0.03
CDX1-201ENST00000231656 Q6ZRU5 148 aa14.88□□□□□ -0.03
CDX1-201ENST00000231656 F8WDY8 70 aa14.87□□□□□ -0.03
CDX1-201ENST00000231656 LY6G6CO95867 125 aa14.87□□□□□ -0.03
CDX1-201ENST00000231656 LINC00476Q8WZB0 136 aa14.86□□□□□ -0.03
CDX1-201ENST00000231656 DNAH10Q8IVF4 4471 aa14.85□□□□□ -0.03
CDX1-201ENST00000231656 ALMS1Q8TCU4 4167 aa14.85□□□□□ -0.03
CDX1-201ENST00000231656 H0YGX0 51 aa14.85□□□□□ -0.03
CDX1-201ENST00000231656 NCR3O14931 201 aa14.85□□□□□ -0.03
CDX1-201ENST00000231656 TMEM126AQ9H061 195 aa14.84□□□□□ -0.03
CDX1-201ENST00000231656 M0R2N4 97 aa14.83□□□□□ -0.03
CDX1-201ENST00000231656 CBY1Q9Y3M2 126 aa14.82□□□□□ -0.04
CDX1-201ENST00000231656 XAGE1AQ9HD64 81 aa14.8□□□□□ -0.04
CDX1-201ENST00000231656 A0A087WYN8 130 aa14.8□□□□□ -0.04
CDX1-201ENST00000231656 Q6ZR54 194 aa14.8□□□□□ -0.04
CDX1-201ENST00000231656 DNAH6Q9C0G6 4158 aa14.8□□□□□ -0.04
CDX1-201ENST00000231656 NDUFC2-KCTD14E9PQ53 114 aa14.79□□□□□ -0.04
CDX1-201ENST00000231656 SYCNQ0VAF6 134 aa14.79□□□□□ -0.04
CDX1-201ENST00000231656 TEX49A0A1B0GTD5 131 aa14.77□□□□□ -0.05
CDX1-201ENST00000231656 S100A7L2Q5SY68 101 aa14.77□□□□□ -0.05
CDX1-201ENST00000231656 USP17L23D6RBM5 183 aa14.76□□□□□ -0.05
CDX1-201ENST00000231656 IGLV6-57P01721 117 aa14.76□□□□□ -0.05
CDX1-201ENST00000231656 PSCAO43653 123 aa14.75□□□□□ -0.05
CDX1-201ENST00000231656 RPL18AQ02543 176 aaKnown RBP14.75□□□□□ -0.05
CDX1-201ENST00000231656 BAALC-AS2P0C853 105 aa14.74□□□□□ -0.05
CDX1-201ENST00000231656 Q6ZRN7 208 aaPredicted RBP14.74□□□□□ -0.05
CDX1-201ENST00000231656 Q6ZRP5 223 aa14.73□□□□□ -0.05
CDX1-201ENST00000231656 C22orf24Q9Y442 160 aa14.73□□□□□ -0.05
CDX1-201ENST00000231656 LECT2O14960 151 aa14.73□□□□□ -0.05
CDX1-201ENST00000231656 SLPIP03973 132 aa14.73□□□□□ -0.05
CDX1-201ENST00000231656 VPREB1P12018 145 aa14.73□□□□□ -0.05
CDX1-201ENST00000231656 DNAH2Q9P225 4427 aa14.72□□□□□ -0.05
CDX1-201ENST00000231656 DNAL4O96015 105 aa14.7□□□□□ -0.06
CDX1-201ENST00000231656 GAGE2EQ4V326 116 aa14.7□□□□□ -0.06
CDX1-201ENST00000231656 C6orf99Q4VX62 202 aa14.7□□□□□ -0.06
CDX1-201ENST00000231656 GAGE2DQ9UEU5 116 aa14.7□□□□□ -0.06
CDX1-201ENST00000231656 TRBV10-3A0A0K0K1G6 114 aa14.68□□□□□ -0.06
CDX1-201ENST00000231656 TLX1NBP0CAT3 122 aa14.68□□□□□ -0.06
CDX1-201ENST00000231656 A0A1B0GX51 115 aa14.68□□□□□ -0.06
CDX1-201ENST00000231656 LINC00167Q96N53 147 aa14.68□□□□□ -0.06
CDX1-201ENST00000231656 CDIP1Q9H305 208 aa14.68□□□□□ -0.06
CDX1-201ENST00000231656 C9orf129Q5T035 196 aaKnown RBP14.67□□□□□ -0.06
CDX1-201ENST00000231656 HYDINQ4G0P3 5121 aa14.66□□□□□ -0.06
CDX1-201ENST00000231656 SACSQ9NZJ4 4579 aa14.66□□□□□ -0.06
CDX1-201ENST00000231656 C1orf134Q5TEV5 83 aa14.65□□□□□ -0.06
CDX1-201ENST00000231656 M0R378 163 aa14.65□□□□□ -0.06
CDX1-201ENST00000231656 Q8N814 137 aa14.65□□□□□ -0.06
CDX1-201ENST00000231656 LRCOL1A6NCL2 159 aa14.64□□□□□ -0.07
CDX1-201ENST00000231656 TRAV23DV6A0A075B6W5 121 aa14.63□□□□□ -0.07
CDX1-201ENST00000231656 LINC00575Q6W349 94 aa14.61□□□□□ -0.07
CDX1-201ENST00000231656 C14orf177Q52M58 125 aa14.6□□□□□ -0.07
CDX1-201ENST00000231656 ORMDL1Q9P0S3 153 aa14.6□□□□□ -0.07
CDX1-201ENST00000231656 LCE6AA0A183 80 aa14.59□□□□□ -0.07
CDX1-201ENST00000231656 DIRC1Q969H9 104 aa14.58□□□□□ -0.08
CDX1-201ENST00000231656 SIGMAR1Q99720 223 aa14.58□□□□□ -0.08
CDX1-201ENST00000231656 SERTAD4-AS1Q5TG53 156 aa14.57□□□□□ -0.08
CDX1-201ENST00000231656 PLA2G2DQ9UNK4 145 aa14.57□□□□□ -0.08
CDX1-201ENST00000231656 FRAS1Q86XX4 4008 aa14.57□□□□□ -0.08
CDX1-201ENST00000231656 DNAH17Q9UFH2 4485 aa14.57□□□□□ -0.08
CDX1-201ENST00000231656 ZNF73O43830 326 aaPredicted RBP14.57□□□□□ -0.08
CDX1-201ENST00000231656 A0A087WTM6 91 aa14.55□□□□□ -0.08
CDX1-201ENST00000231656 OBSCN-AS1Q96MR7 158 aa14.55□□□□□ -0.08
CDX1-201ENST00000231656 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.54□□□□□ -0.08
CDX1-201ENST00000231656 TRBV7-6A0A0J9YX20 115 aa14.54□□□□□ -0.08
CDX1-201ENST00000231656 FAM240AA0A1B0GVK7 77 aa14.54□□□□□ -0.08
CDX1-201ENST00000231656 SNCGO76070 127 aa14.54□□□□□ -0.08
CDX1-201ENST00000231656 hADV29S1A0JD25 119 aa14.53□□□□□ -0.08
CDX1-201ENST00000231656 CNBPP62633 177 aaKnown RBP14.53□□□□□ -0.08
CDX1-201ENST00000231656 LOC107984640A0A0U1RRK4 108 aa14.52□□□□□ -0.08
CDX1-201ENST00000231656 INAFM2P0DMQ5 153 aa14.52□□□□□ -0.08
CDX1-201ENST00000231656 NKAPP1Q8N9T2 125 aa14.52□□□□□ -0.08
CDX1-201ENST00000231656 IGLV5-37A0A075B6J1 123 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms