RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 COX17Q14061 63 aa12.87□□□□□ -0.35
VTI1B-201ENST00000216456 LINC00158P58513 81 aa12.86□□□□□ -0.35
VTI1B-201ENST00000216456 TMEM223A0PJW6 202 aa12.85□□□□□ -0.35
VTI1B-201ENST00000216456 RPL24P83731 157 aaKnown RBP12.85□□□□□ -0.35
VTI1B-201ENST00000216456 SNAPINO95295 136 aa12.84□□□□□ -0.35
VTI1B-201ENST00000216456 FAM229BQ4G0N7 80 aa12.84□□□□□ -0.35
VTI1B-201ENST00000216456 SVBPQ8N300 66 aa12.83□□□□□ -0.36
VTI1B-201ENST00000216456 C3orf22Q8N5N4 141 aa12.83□□□□□ -0.36
VTI1B-201ENST00000216456 LINC00304Q8N9R0 145 aa12.83□□□□□ -0.36
VTI1B-201ENST00000216456 PLEKHB2Q96CS7 222 aa12.83□□□□□ -0.36
VTI1B-201ENST00000216456 IFI27L1Q96BM0 104 aa12.82□□□□□ -0.36
VTI1B-201ENST00000216456 SMIM13P0DJ93 91 aa12.81□□□□□ -0.36
VTI1B-201ENST00000216456 FAM19A2Q8N3H0 131 aa12.81□□□□□ -0.36
VTI1B-201ENST00000216456 HIGD2AQ9BW72 106 aa12.81□□□□□ -0.36
VTI1B-201ENST00000216456 IGKV2D-26A0A0A0MRZ7 120 aa12.8□□□□□ -0.36
VTI1B-201ENST00000216456 CBLN2Q8IUK8 224 aa12.8□□□□□ -0.36
VTI1B-201ENST00000216456 TRAV12-1A0A0B4J245 112 aa12.79□□□□□ -0.36
VTI1B-201ENST00000216456 NDUFA5Q16718 116 aa12.78□□□□□ -0.36
VTI1B-201ENST00000216456 CHCHD1Q96BP2 118 aaKnown RBP12.78□□□□□ -0.36
VTI1B-201ENST00000216456 NCR3O14931 201 aa12.77□□□□□ -0.37
VTI1B-201ENST00000216456 H0Y8G0 127 aa12.76□□□□□ -0.37
VTI1B-201ENST00000216456 SFTA2Q6UW10 78 aa12.76□□□□□ -0.37
VTI1B-201ENST00000216456 MEIG1Q5JSS6 88 aa12.75□□□□□ -0.37
VTI1B-201ENST00000216456 BOD1L2Q8IYS8 172 aa12.75□□□□□ -0.37
VTI1B-201ENST00000216456 MIR7-3HGQ8N6C7 128 aa12.75□□□□□ -0.37
VTI1B-201ENST00000216456 TSPEAR-AS2P59090 65 aa12.73□□□□□ -0.37
VTI1B-201ENST00000216456 SPRR4Q96PI1 79 aa12.73□□□□□ -0.37
VTI1B-201ENST00000216456 LINC00310P59036 64 aa12.72□□□□□ -0.37
VTI1B-201ENST00000216456 HSBP1O75506 76 aa12.71□□□□□ -0.37
VTI1B-201ENST00000216456 ATP6V1G1O75348 118 aa12.7□□□□□ -0.38
VTI1B-201ENST00000216456 DAND5Q8N907 189 aa12.7□□□□□ -0.38
VTI1B-201ENST00000216456 NDUFA12Q9UI09 145 aa12.7□□□□□ -0.38
VTI1B-201ENST00000216456 TRGC2P03986 189 aa12.69□□□□□ -0.38
VTI1B-201ENST00000216456 IGLV7-46A0A075B6I9 117 aa12.68□□□□□ -0.38
VTI1B-201ENST00000216456 PPDPFQ9H3Y8 114 aa12.68□□□□□ -0.38
VTI1B-201ENST00000216456 MUC17Q685J3 4493 aa12.68□□□□□ -0.38
VTI1B-201ENST00000216456 TRBV10-3A0A0K0K1G6 114 aa12.67□□□□□ -0.38
VTI1B-201ENST00000216456 PRYO14603 147 aa12.67□□□□□ -0.38
VTI1B-201ENST00000216456 KRTAP4-16G5E9R7 235 aaPredicted RBP12.66□□□□□ -0.38
VTI1B-201ENST00000216456 SERF1AO75920 110 aa12.66□□□□□ -0.38
VTI1B-201ENST00000216456 SPRR1AP35321 89 aa12.66□□□□□ -0.38
VTI1B-201ENST00000216456 SMCR5Q8TEV8 140 aa12.66□□□□□ -0.38
VTI1B-201ENST00000216456 PMCHL2Q9BQD1 86 aa12.66□□□□□ -0.38
VTI1B-201ENST00000216456 HERV-K104P63124 156 aa12.65□□□□□ -0.38
VTI1B-201ENST00000216456 KCNQ1DNQ9H478 68 aa12.65□□□□□ -0.38
VTI1B-201ENST00000216456 FAT4Q6V0I7 4981 aa12.64□□□□□ -0.39
VTI1B-201ENST00000216456 MYMXA0A1B0GTQ4 84 aa12.63□□□□□ -0.39
VTI1B-201ENST00000216456 CDIP1Q9H305 208 aa12.63□□□□□ -0.39
VTI1B-201ENST00000216456 LEPROTL1O95214 131 aa12.62□□□□□ -0.39
VTI1B-201ENST00000216456 TPRXLQ17RH7 258 aa12.62□□□□□ -0.39
VTI1B-201ENST00000216456 LINC00337Q8N6G1 96 aa12.62□□□□□ -0.39
VTI1B-201ENST00000216456 ETDCA0A1B0GVM5 59 aa12.61□□□□□ -0.39
VTI1B-201ENST00000216456 ERC2-IT1O76042 136 aa12.61□□□□□ -0.39
VTI1B-201ENST00000216456 FABP4P15090 132 aa12.61□□□□□ -0.39
VTI1B-201ENST00000216456 Q8NBF4 154 aa12.61□□□□□ -0.39
VTI1B-201ENST00000216456 LEPROTO15243 131 aa12.6□□□□□ -0.39
VTI1B-201ENST00000216456 ZNF706Q9Y5V0 76 aaPredicted RBP12.59□□□□□ -0.39
VTI1B-201ENST00000216456 B5MCH6 92 aa12.57□□□□□ -0.4
VTI1B-201ENST00000216456 J3QQQ9 107 aa12.57□□□□□ -0.4
VTI1B-201ENST00000216456 GAGE2AQ6NT46 116 aa12.57□□□□□ -0.4
VTI1B-201ENST00000216456 EIF4EBP3O60516 100 aaPredicted RBP12.56□□□□□ -0.4
VTI1B-201ENST00000216456 SLC7A5P1Q8MH63 180 aa12.56□□□□□ -0.4
VTI1B-201ENST00000216456 MAP1LC3CQ9BXW4 147 aa12.56□□□□□ -0.4
VTI1B-201ENST00000216456 LINC00587B1AMM8 73 aa12.55□□□□□ -0.4
VTI1B-201ENST00000216456 SPAG11AQ6PDA7 123 aa12.55□□□□□ -0.4
VTI1B-201ENST00000216456 A0A0U1RQV1 116 aa12.54□□□□□ -0.4
VTI1B-201ENST00000216456 DPM2O94777 84 aa12.54□□□□□ -0.4
VTI1B-201ENST00000216456 DDTP30046 118 aa12.54□□□□□ -0.4
VTI1B-201ENST00000216456 NPC2P61916 151 aa12.54□□□□□ -0.4
VTI1B-201ENST00000216456 LCE2AQ5TA79 106 aaPredicted RBP12.54□□□□□ -0.4
VTI1B-201ENST00000216456 Q9BRP9 147 aa12.54□□□□□ -0.4
VTI1B-201ENST00000216456 LOC107984156A0A0G2JMH3 177 aa12.53□□□□□ -0.4
VTI1B-201ENST00000216456 PLNP26678 52 aa12.53□□□□□ -0.4
VTI1B-201ENST00000216456 CTAG1AP78358 180 aa12.53□□□□□ -0.4
VTI1B-201ENST00000216456 LINC00483Q53H64 154 aa12.53□□□□□ -0.4
VTI1B-201ENST00000216456 C4orf48Q5BLP8 95 aa12.53□□□□□ -0.4
VTI1B-201ENST00000216456 SOSTDC1Q6X4U4 206 aa12.53□□□□□ -0.4
VTI1B-201ENST00000216456 ARL17AQ8IVW1 177 aa12.53□□□□□ -0.4
VTI1B-201ENST00000216456 IGLV9-49A0A0B4J1Y8 123 aa12.51□□□□□ -0.41
VTI1B-201ENST00000216456 COLCA2A8K830 154 aa12.51□□□□□ -0.41
VTI1B-201ENST00000216456 IGKCP01834 107 aa12.51□□□□□ -0.41
VTI1B-201ENST00000216456 HSPB8Q9UJY1 196 aa12.51□□□□□ -0.41
VTI1B-201ENST00000216456 LGALS3P17931 250 aaKnown RBP12.5□□□□□ -0.41
VTI1B-201ENST00000216456 MOBPQ13875 183 aa12.5□□□□□ -0.41
VTI1B-201ENST00000216456 ADAMTSL4-AS1Q5T5F5 129 aa12.5□□□□□ -0.41
VTI1B-201ENST00000216456 TRBV10-2A0A0K0K1G8 114 aa12.49□□□□□ -0.41
VTI1B-201ENST00000216456 HERVK_113P61574 105 aa12.48□□□□□ -0.41
VTI1B-201ENST00000216456 SPANXB1Q9NS25 103 aaPredicted RBP12.48□□□□□ -0.41
VTI1B-201ENST00000216456 KRTAP13-3Q3SY46 172 aa12.47□□□□□ -0.41
VTI1B-201ENST00000216456 IGLV6-57P01721 117 aa12.46□□□□□ -0.41
VTI1B-201ENST00000216456 Q6ZRX8 168 aa12.46□□□□□ -0.41
VTI1B-201ENST00000216456 MIEN1Q9BRT3 115 aa12.46□□□□□ -0.41
VTI1B-201ENST00000216456 A0A0J9YXY3 114 aa12.45□□□□□ -0.42
VTI1B-201ENST00000216456 NMUP48645 174 aa12.45□□□□□ -0.42
VTI1B-201ENST00000216456 S100A12P80511 92 aa12.45□□□□□ -0.42
VTI1B-201ENST00000216456 S100A7L2Q5SY68 101 aa12.45□□□□□ -0.42
VTI1B-201ENST00000216456 FP248Q71RG6 208 aaPredicted RBP12.45□□□□□ -0.42
VTI1B-201ENST00000216456 SPINK1P00995 79 aa12.43□□□□□ -0.42
VTI1B-201ENST00000216456 ST20-AS1Q8NBB2 130 aa12.43□□□□□ -0.42
VTI1B-201ENST00000216456 KRTAP9-2Q9BYQ4 174 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms