RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 OCR1Q9BZK8 76 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 COL27A1Q8IZC6 1860 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-221ENST00000641996 IGLV11-55A0A075B6I3 123 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 TRGV4A0A0C4DH28 118 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 K7EQG2 157 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 SLURP2P0DP57 97 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 KALRNO60229 2985 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 IGLV8-61A0A075B6I0 122 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 SPTY2D1-AS1A0A0U1RR47 76 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 MXRA5Q9NR99 2828 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 KLLNB2CW77 178 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 IGLV5-37A0A075B6J1 123 aa2.5□□□□□ -2.01
SCN1A-221ENST00000641996 C11orf1Q9H5F2 150 aa2.49□□□□□ -2.01
SCN1A-221ENST00000641996 CD163L1Q9NR16 1453 aa2.49□□□□□ -2.01
SCN1A-221ENST00000641996 H0YGG7 62 aa2.49□□□□□ -2.01
SCN1A-221ENST00000641996 IGLV3-9A0A075B6K5 115 aa2.49□□□□□ -2.01
SCN1A-221ENST00000641996 IGFL4Q6B9Z1 124 aa2.49□□□□□ -2.01
SCN1A-221ENST00000641996 IGHV3-35A0A0C4DH35 117 aa2.49□□□□□ -2.01
SCN1A-221ENST00000641996 IGHV3-23P01764 117 aa2.49□□□□□ -2.01
SCN1A-221ENST00000641996 LINC01560Q8TB33 94 aa2.49□□□□□ -2.01
SCN1A-221ENST00000641996 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-221ENST00000641996 TLX1NBP0CAT3 122 aa2.49□□□□□ -2.01
SCN1A-221ENST00000641996 RPL39P62891 51 aaKnown RBP2.49□□□□□ -2.01
SCN1A-221ENST00000641996 PCOTHQ58A44 107 aa2.49□□□□□ -2.01
SCN1A-221ENST00000641996 LINC01590Q5TEZ4 76 aa2.49□□□□□ -2.01
SCN1A-221ENST00000641996 TACC2O95359 2948 aa2.49□□□□□ -2.01
SCN1A-221ENST00000641996 NRXN3Q9Y4C0 1643 aa2.49□□□□□ -2.01
SCN1A-221ENST00000641996 DEFB108BQ8NET1 73 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 NF1P21359 2839 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 TMEM105Q8N8V8 129 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 NRXN2Q9P2S2 1712 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 ETDCA0A1B0GVM5 59 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 Q6ZQT0 140 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 LMO4P61968 165 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 BRWD1-AS2P59051 145 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 PDE6HQ13956 83 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 FAM215AQ9Y5M1 114 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 IGHV3-38A0A0C4DH36 116 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 IGKV3-20P01619 116 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 COA5Q86WW8 74 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 TRGV2A0A075B6R0 118 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 LY6G5CQ5SRR4 150 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 LINC01600Q96MT4 127 aa2.48□□□□□ -2.01
SCN1A-221ENST00000641996 PDZD2O15018 2839 aa2.47□□□□□ -2.01
SCN1A-221ENST00000641996 BCE1O60756 84 aa2.47□□□□□ -2.01
SCN1A-221ENST00000641996 PINLYPA6NC86 204 aa2.47□□□□□ -2.01
SCN1A-221ENST00000641996 CGB3P0DN86 165 aa2.47□□□□□ -2.01
SCN1A-221ENST00000641996 CGB7P0DN87 165 aa2.47□□□□□ -2.01
SCN1A-221ENST00000641996 NHSQ6T4R5 1651 aa2.47□□□□□ -2.01
SCN1A-221ENST00000641996 ELOF1P60002 83 aaKnown RBP2.47□□□□□ -2.01
SCN1A-221ENST00000641996 LINC00308Q8TCZ7 52 aa2.47□□□□□ -2.01
SCN1A-221ENST00000641996 KIF25-AS1Q9Y6Z4 181 aa2.47□□□□□ -2.01
SCN1A-221ENST00000641996 IGLV1-51P01701 117 aa2.47□□□□□ -2.01
SCN1A-221ENST00000641996 SLURP1P55000 103 aa2.47□□□□□ -2.01
SCN1A-221ENST00000641996 UQCR11O14957 56 aa2.47□□□□□ -2.01
SCN1A-221ENST00000641996 IGLV4-3A0A075B6K6 122 aa2.46□□□□□ -2.01
SCN1A-221ENST00000641996 IGLV5-52A0A0A0MRZ9 124 aa2.46□□□□□ -2.01
SCN1A-221ENST00000641996 IGHV3-16A0A0C4DH30 117 aa2.46□□□□□ -2.01
SCN1A-221ENST00000641996 C1orf229Q6ZS94 237 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-221ENST00000641996 PMS2P5A8MQ11 134 aa2.46□□□□□ -2.02
SCN1A-221ENST00000641996 KAAG1Q9UBP8 84 aa2.46□□□□□ -2.02
SCN1A-221ENST00000641996 NIPBLQ6KC79 2804 aaeCLIP2.46□□□□□ -2.02
SCN1A-221ENST00000641996 ARTNQ5T4W7 220 aa2.46□□□□□ -2.02
SCN1A-221ENST00000641996 LINC00322Q6ZN03 302 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-221ENST00000641996 ROMO1P60602 79 aa2.46□□□□□ -2.02
SCN1A-221ENST00000641996 Q6ZTI0 123 aa2.46□□□□□ -2.02
SCN1A-221ENST00000641996 ZNRD1Q9P1U0 126 aa2.46□□□□□ -2.02
SCN1A-221ENST00000641996 CYSRT1A8MQ03 144 aa2.46□□□□□ -2.02
SCN1A-221ENST00000641996 IGHV3OR16-10A0A075B7F0 116 aa2.46□□□□□ -2.02
SCN1A-221ENST00000641996 TRGV1A0A0A0MS02 117 aa2.46□□□□□ -2.02
SCN1A-221ENST00000641996 H3BPC8 53 aa2.46□□□□□ -2.02
SCN1A-221ENST00000641996 RPL37AP61513 92 aaKnown RBP2.45□□□□□ -2.02
SCN1A-221ENST00000641996 XAGE1AQ9HD64 81 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 DNAH10OSP0CZ25 163 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 A0A1B0GW54 56 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 GAS8-AS1O95177 125 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 LHBP01229 141 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 SPINK7P58062 85 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 LENEPQ9Y5L5 61 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 IGLV2-14P01704 120 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 MINOS1Q5TGZ0 78 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 LINC01006Q8NI28 216 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 KCPQ6ZWJ8 1503 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 MRPL33O75394 65 aaKnown RBP2.45□□□□□ -2.02
SCN1A-221ENST00000641996 CCL4P13236 92 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 DEFB116Q30KQ4 102 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 C9orf106Q8NAJ2 232 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 DMAC1Q96GE9 116 aa2.45□□□□□ -2.02
SCN1A-221ENST00000641996 C17orf58Q2M2W7 97 aa2.44□□□□□ -2.02
SCN1A-221ENST00000641996 DEFB126Q9BYW3 111 aa2.44□□□□□ -2.02
SCN1A-221ENST00000641996 LINC00574Q9H8X3 128 aa2.44□□□□□ -2.02
SCN1A-221ENST00000641996 A0A096LNJ9 63 aa2.44□□□□□ -2.02
SCN1A-221ENST00000641996 CCL4L1Q8NHW4 92 aa2.44□□□□□ -2.02
SCN1A-221ENST00000641996 LINC00167Q96N53 147 aa2.44□□□□□ -2.02
SCN1A-221ENST00000641996 CHD7Q9P2D1 2997 aa2.44□□□□□ -2.02
SCN1A-221ENST00000641996 A0A0C4DFX4 3053 aa2.44□□□□□ -2.02
SCN1A-221ENST00000641996 IGLV7-43P04211 117 aa2.44□□□□□ -2.02
SCN1A-221ENST00000641996 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-221ENST00000641996 IGKV2-29A2NJV5 120 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-221ENST00000641996 C10orf25Q5T742 122 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms