RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TRAV12-1A0A0B4J245 112 aa11.58□□□□□ -0.56
CLN3-239ENST00000628023 IGKV2-24A0A0C4DH68 120 aa11.58□□□□□ -0.56
CLN3-239ENST00000628023 SMIM1B2RUZ4 78 aa11.58□□□□□ -0.56
CLN3-239ENST00000628023 CHTF8P0CG12 524 aa11.58□□□□□ -0.56
CLN3-239ENST00000628023 KIAA0087Q14695 138 aa11.58□□□□□ -0.56
CLN3-239ENST00000628023 C6orf226Q5I0X4 101 aa11.58□□□□□ -0.56
CLN3-239ENST00000628023 Q8IZM0 81 aa11.58□□□□□ -0.56
CLN3-239ENST00000628023 MRPL35Q9NZE8 188 aaKnown RBP11.58□□□□□ -0.56
CLN3-239ENST00000628023 LOC107984640A0A0U1RRK4 108 aa11.57□□□□□ -0.56
CLN3-239ENST00000628023 TMEM170BQ5T4T1 132 aa11.57□□□□□ -0.56
CLN3-239ENST00000628023 UNQ6190/PRO20217Q6UXQ8 127 aa11.57□□□□□ -0.56
CLN3-239ENST00000628023 FLG2Q5D862 2391 aaPredicted RBP11.57□□□□□ -0.56
CLN3-239ENST00000628023 C11orf86A6NJI1 115 aa11.56□□□□□ -0.56
CLN3-239ENST00000628023 F8VRH5 84 aa11.56□□□□□ -0.56
CLN3-239ENST00000628023 ZNF22P17026 224 aaPredicted RBP11.56□□□□□ -0.56
CLN3-239ENST00000628023 RPL18AQ02543 176 aaKnown RBP11.56□□□□□ -0.56
CLN3-239ENST00000628023 C2orf82Q6UX34 121 aa11.56□□□□□ -0.56
CLN3-239ENST00000628023 A0A096LNI7 61 aa11.55□□□□□ -0.56
CLN3-239ENST00000628023 PANO1I0J062 215 aa11.55□□□□□ -0.56
CLN3-239ENST00000628023 RNF151Q2KHN1 245 aa11.55□□□□□ -0.56
CLN3-239ENST00000628023 MAJINQ3KP22 176 aa11.55□□□□□ -0.56
CLN3-239ENST00000628023 C10orf25Q5T742 122 aa11.55□□□□□ -0.56
CLN3-239ENST00000628023 CIRBP-AS1Q8TBR5 109 aa11.55□□□□□ -0.56
CLN3-239ENST00000628023 DNAH8Q96JB1 4490 aa11.54□□□□□ -0.56
CLN3-239ENST00000628023 PLA2G1BP04054 148 aaKnown RBP11.54□□□□□ -0.56
CLN3-239ENST00000628023 GAGE2BQ13066 116 aa11.54□□□□□ -0.56
CLN3-239ENST00000628023 SPACA4Q8TDM5 124 aa11.54□□□□□ -0.56
CLN3-239ENST00000628023 COX7B2Q8TF08 81 aa11.54□□□□□ -0.56
CLN3-239ENST00000628023 LINC00474Q9P2X8 69 aa11.54□□□□□ -0.56
CLN3-239ENST00000628023 C6orf48Q9UBA6 75 aa11.54□□□□□ -0.56
CLN3-239ENST00000628023 VPS13BQ7Z7G8 4022 aa11.53□□□□□ -0.56
CLN3-239ENST00000628023 TRBV30A0A0K0K1B3 111 aa11.53□□□□□ -0.56
CLN3-239ENST00000628023 CXCL5P42830 114 aa11.53□□□□□ -0.56
CLN3-239ENST00000628023 MAP1LC3CQ9BXW4 147 aa11.53□□□□□ -0.56
CLN3-239ENST00000628023 ODF1Q14990 250 aa11.52□□□□□ -0.57
CLN3-239ENST00000628023 HERC1Q15751 4861 aa11.51□□□□□ -0.57
CLN3-239ENST00000628023 FAT1Q14517 4588 aa11.51□□□□□ -0.57
CLN3-239ENST00000628023 PTTG1IPP53801 180 aa11.51□□□□□ -0.57
CLN3-239ENST00000628023 CIRBPQ14011 172 aaKnown RBP11.51□□□□□ -0.57
CLN3-239ENST00000628023 COA6Q5JTJ3 125 aaKnown RBP11.51□□□□□ -0.57
CLN3-239ENST00000628023 A0A087WYN8 130 aa11.5□□□□□ -0.57
CLN3-239ENST00000628023 J3QL48 77 aa11.5□□□□□ -0.57
CLN3-239ENST00000628023 IGLV5-39A0A0G2JS06 123 aa11.49□□□□□ -0.57
CLN3-239ENST00000628023 LINC00528Q8N1L1 170 aa11.49□□□□□ -0.57
CLN3-239ENST00000628023 STPG4Q8N801 248 aa11.49□□□□□ -0.57
CLN3-239ENST00000628023 PLNP26678 52 aa11.48□□□□□ -0.57
CLN3-239ENST00000628023 C9orf116Q5BN46 136 aaPredicted RBP11.48□□□□□ -0.57
CLN3-239ENST00000628023 DPM2O94777 84 aa11.47□□□□□ -0.57
CLN3-239ENST00000628023 TLX1NBP0CAT3 122 aa11.47□□□□□ -0.57
CLN3-239ENST00000628023 GAGE2EQ4V326 116 aa11.47□□□□□ -0.57
CLN3-239ENST00000628023 PMCHL2Q9BQD1 86 aa11.47□□□□□ -0.57
CLN3-239ENST00000628023 GAGE2DQ9UEU5 116 aa11.47□□□□□ -0.57
CLN3-239ENST00000628023 TMEM223A0PJW6 202 aa11.46□□□□□ -0.57
CLN3-239ENST00000628023 NDUFC2-KCTD14E9PQ53 114 aa11.46□□□□□ -0.57
CLN3-239ENST00000628023 Q6ZRP5 223 aa11.45□□□□□ -0.58
CLN3-239ENST00000628023 MYCBP2O75592 4640 aa11.44□□□□□ -0.58
CLN3-239ENST00000628023 SYS1-DBNDD2H3BUS1 97 aa11.44□□□□□ -0.58
CLN3-239ENST00000628023 IGKCP01834 107 aa11.44□□□□□ -0.58
CLN3-239ENST00000628023 S100A6P06703 90 aa11.44□□□□□ -0.58
CLN3-239ENST00000628023 PLAC8Q9NZF1 115 aa11.44□□□□□ -0.58
CLN3-239ENST00000628023 HERVK_113P61574 105 aa11.43□□□□□ -0.58
CLN3-239ENST00000628023 KRTDAPP60985 99 aa11.42□□□□□ -0.58
CLN3-239ENST00000628023 SFTA2Q6UW10 78 aa11.42□□□□□ -0.58
CLN3-239ENST00000628023 S100A2P29034 98 aa11.41□□□□□ -0.58
CLN3-239ENST00000628023 PET117Q6UWS5 81 aa11.41□□□□□ -0.58
CLN3-239ENST00000628023 C7orf33Q8WU49 177 aa11.41□□□□□ -0.58
CLN3-239ENST00000628023 KRTAP29-1A8MX34 341 aaPredicted RBP11.39□□□□□ -0.59
CLN3-239ENST00000628023 C3orf79P0CE67 100 aa11.39□□□□□ -0.59
CLN3-239ENST00000628023 ZNF625Q96I27 306 aaPredicted RBP11.39□□□□□ -0.59
CLN3-239ENST00000628023 A0A1W2PNN7 141 aa11.38□□□□□ -0.59
CLN3-239ENST00000628023 C20orf202A1L168 122 aa11.38□□□□□ -0.59
CLN3-239ENST00000628023 RPL37AP61513 92 aaKnown RBP11.38□□□□□ -0.59
CLN3-239ENST00000628023 LINC01545Q5VT33 79 aa11.38□□□□□ -0.59
CLN3-239ENST00000628023 PFN2P35080 140 aa11.37□□□□□ -0.59
CLN3-239ENST00000628023 FAM19A5Q7Z5A7 132 aaPredicted RBP11.37□□□□□ -0.59
CLN3-239ENST00000628023 PLEKHB2Q96CS7 222 aa11.37□□□□□ -0.59
CLN3-239ENST00000628023 XAGE1AQ9HD64 81 aa11.37□□□□□ -0.59
CLN3-239ENST00000628023 FAM168BA1KXE4 195 aa11.36□□□□□ -0.59
CLN3-239ENST00000628023 LEPROTO15243 131 aa11.36□□□□□ -0.59
CLN3-239ENST00000628023 C9orf129Q5T035 196 aaKnown RBP11.36□□□□□ -0.59
CLN3-239ENST00000628023 HIST3H2BBQ8N257 126 aa11.36□□□□□ -0.59
CLN3-239ENST00000628023 ERG28Q9UKR5 140 aa11.36□□□□□ -0.59
CLN3-239ENST00000628023 NDUFA12Q9UI09 145 aa11.34□□□□□ -0.59
CLN3-239ENST00000628023 MYMXA0A1B0GTQ4 84 aa11.33□□□□□ -0.6
CLN3-239ENST00000628023 J3QQQ9 107 aa11.33□□□□□ -0.6
CLN3-239ENST00000628023 LGALS3P17931 250 aaKnown RBP11.33□□□□□ -0.6
CLN3-239ENST00000628023 COX17Q14061 63 aa11.33□□□□□ -0.6
CLN3-239ENST00000628023 MEIG1Q5JSS6 88 aa11.33□□□□□ -0.6
CLN3-239ENST00000628023 HIST1H2BLQ99880 126 aa11.33□□□□□ -0.6
CLN3-239ENST00000628023 LINC00158P58513 81 aa11.32□□□□□ -0.6
CLN3-239ENST00000628023 TSPEAR-AS2P59090 65 aa11.32□□□□□ -0.6
CLN3-239ENST00000628023 SNRPEP62304 92 aaKnown RBP11.32□□□□□ -0.6
CLN3-239ENST00000628023 HERV-K104P63124 156 aa11.32□□□□□ -0.6
CLN3-239ENST00000628023 PHF5AQ7RTV0 110 aaKnown RBP11.32□□□□□ -0.6
CLN3-239ENST00000628023 M0QXV9 152 aa11.31□□□□□ -0.6
CLN3-239ENST00000628023 A0A0U1RRA0 63 aa11.3□□□□□ -0.6
CLN3-239ENST00000628023 E9PLD3 99 aa11.3□□□□□ -0.6
CLN3-239ENST00000628023 OXTP01178 125 aa11.29□□□□□ -0.6
CLN3-239ENST00000628023 NMUP48645 174 aa11.29□□□□□ -0.6
CLN3-239ENST00000628023 SERTAD4-AS1Q5TG53 156 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms