RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 C5orf38Q86SI9 138 aa8.3□□□□□ -1.08
PNKP-217ENST00000625216 TTTY13Q9BZ97 58 aa8.3□□□□□ -1.08
PNKP-217ENST00000625216 GAGE12HA6NDE8 117 aa8.29□□□□□ -1.08
PNKP-217ENST00000625216 H3BRM9 83 aa8.29□□□□□ -1.08
PNKP-217ENST00000625216 LECT2O14960 151 aa8.29□□□□□ -1.08
PNKP-217ENST00000625216 MIAQ16674 131 aa8.29□□□□□ -1.08
PNKP-217ENST00000625216 CD164L2Q6UWJ8 174 aa8.29□□□□□ -1.08
PNKP-217ENST00000625216 PCP2Q8IVA1 136 aa8.29□□□□□ -1.08
PNKP-217ENST00000625216 C14orf144Q96I85 54 aa8.29□□□□□ -1.08
PNKP-217ENST00000625216 C1orf43Q9BWL3 253 aa8.29□□□□□ -1.08
PNKP-217ENST00000625216 A0A087WZ39 114 aa8.28□□□□□ -1.08
PNKP-217ENST00000625216 TRAV8-4A0A0B4J246 113 aa8.28□□□□□ -1.08
PNKP-217ENST00000625216 IGHV1-58A0A0C4DH39 117 aa8.28□□□□□ -1.08
PNKP-217ENST00000625216 IGLV5-39A0A0G2JS06 123 aa8.28□□□□□ -1.08
PNKP-217ENST00000625216 FAM229AH3BQW9 127 aa8.28□□□□□ -1.08
PNKP-217ENST00000625216 LEPROTO15243 131 aa8.28□□□□□ -1.08
PNKP-217ENST00000625216 COX8AP10176 69 aa8.28□□□□□ -1.08
PNKP-217ENST00000625216 C14orf177Q52M58 125 aa8.28□□□□□ -1.08
PNKP-217ENST00000625216 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.26□□□□□ -1.09
PNKP-217ENST00000625216 TSTD3H0UI37 97 aa8.26□□□□□ -1.09
PNKP-217ENST00000625216 J3QQQ9 107 aa8.26□□□□□ -1.09
PNKP-217ENST00000625216 COX7A2LO14548 114 aa8.26□□□□□ -1.09
PNKP-217ENST00000625216 Q5VSD8 79 aa8.26□□□□□ -1.09
PNKP-217ENST00000625216 PLEKHB2Q96CS7 222 aa8.26□□□□□ -1.09
PNKP-217ENST00000625216 FAM30AQ9NZY2 134 aa8.26□□□□□ -1.09
PNKP-217ENST00000625216 SMR3BP02814 79 aaPredicted RBP8.25□□□□□ -1.09
PNKP-217ENST00000625216 INAFM2P0DMQ5 153 aa8.25□□□□□ -1.09
PNKP-217ENST00000625216 SLC25A34Q6PIV7 304 aa8.25□□□□□ -1.09
PNKP-217ENST00000625216 Q6ZSA8 131 aa8.25□□□□□ -1.09
PNKP-217ENST00000625216 BOD1L2Q8IYS8 172 aa8.25□□□□□ -1.09
PNKP-217ENST00000625216 LINC01561Q8N1V8 128 aa8.25□□□□□ -1.09
PNKP-217ENST00000625216 UQCR10Q9UDW1 63 aa8.25□□□□□ -1.09
PNKP-217ENST00000625216 LGALS3P17931 250 aaKnown RBP8.24□□□□□ -1.09
PNKP-217ENST00000625216 MIEN1Q9BRT3 115 aa8.24□□□□□ -1.09
PNKP-217ENST00000625216 VPS13BQ7Z7G8 4022 aa8.24□□□□□ -1.09
PNKP-217ENST00000625216 ZNF815PA8K554 130 aa8.23□□□□□ -1.09
PNKP-217ENST00000625216 DLEU1O43261 78 aa8.23□□□□□ -1.09
PNKP-217ENST00000625216 C2orf91Q6ZV80 131 aa8.23□□□□□ -1.09
PNKP-217ENST00000625216 MYMXA0A1B0GTQ4 84 aa8.22□□□□□ -1.09
PNKP-217ENST00000625216 PCP4L1A6NKN8 68 aa8.22□□□□□ -1.09
PNKP-217ENST00000625216 COX7B2Q8TF08 81 aa8.22□□□□□ -1.09
PNKP-217ENST00000625216 ORAOV1Q8WV07 137 aa8.22□□□□□ -1.09
PNKP-217ENST00000625216 TOMM7Q9P0U1 55 aa8.22□□□□□ -1.09
PNKP-217ENST00000625216 MALP21145 153 aa8.21□□□□□ -1.1
PNKP-217ENST00000625216 DDTP30046 118 aa8.21□□□□□ -1.1
PNKP-217ENST00000625216 HAMPP81172 84 aa8.21□□□□□ -1.1
PNKP-217ENST00000625216 KIAA0087Q14695 138 aa8.21□□□□□ -1.1
PNKP-217ENST00000625216 NDUFA12Q9UI09 145 aa8.21□□□□□ -1.1
PNKP-217ENST00000625216 USP17L23D6RBM5 183 aa8.2□□□□□ -1.1
PNKP-217ENST00000625216 NDUFA1O15239 70 aa8.2□□□□□ -1.1
PNKP-217ENST00000625216 HNRNPA3P51991 378 aaKnown RBP8.2□□□□□ -1.1
PNKP-217ENST00000625216 SPAG11BQ08648 103 aa8.2□□□□□ -1.1
PNKP-217ENST00000625216 Q8IZM0 81 aa8.2□□□□□ -1.1
PNKP-217ENST00000625216 C15orf56Q8N910 161 aa8.2□□□□□ -1.1
PNKP-217ENST00000625216 ZNF625Q96I27 306 aaPredicted RBP8.2□□□□□ -1.1
PNKP-217ENST00000625216 SRRM2Q9UQ35 2752 aaKnown RBP8.2□□□□□ -1.1
PNKP-217ENST00000625216 APOMO95445 188 aa8.19□□□□□ -1.1
PNKP-217ENST00000625216 LINC01620Q4KN68 170 aa8.19□□□□□ -1.1
PNKP-217ENST00000625216 A0A0J9YXY3 114 aa8.18□□□□□ -1.1
PNKP-217ENST00000625216 PLA2G1BP04054 148 aaKnown RBP8.18□□□□□ -1.1
PNKP-217ENST00000625216 HERC1Q15751 4861 aa8.17□□□□□ -1.1
PNKP-217ENST00000625216 PRSS2P07478 247 aa8.17□□□□□ -1.1
PNKP-217ENST00000625216 HIGD2BQ4VC39 106 aa8.17□□□□□ -1.1
PNKP-217ENST00000625216 SCXQ7RTU7 201 aa8.17□□□□□ -1.1
PNKP-217ENST00000625216 LINC00526Q96FQ7 95 aa8.17□□□□□ -1.1
PNKP-217ENST00000625216 LINC00587B1AMM8 73 aa8.16□□□□□ -1.1
PNKP-217ENST00000625216 CFAP161Q6P656 301 aa8.16□□□□□ -1.1
PNKP-217ENST00000625216 C2orf82Q6UX34 121 aa8.16□□□□□ -1.1
PNKP-217ENST00000625216 SCGB1D4Q6XE38 83 aa8.16□□□□□ -1.1
PNKP-217ENST00000625216 C9orf163Q8N9P6 203 aa8.16□□□□□ -1.1
PNKP-217ENST00000625216 HIGD1BQ9P298 99 aa8.16□□□□□ -1.1
PNKP-217ENST00000625216 MYCBP2O75592 4640 aa8.15□□□□□ -1.1
PNKP-217ENST00000625216 GVQW2A0A096LPI5 108 aaPredicted RBP8.15□□□□□ -1.1
PNKP-217ENST00000625216 CTAG1AP78358 180 aa8.15□□□□□ -1.1
PNKP-217ENST00000625216 C6orf226Q5I0X4 101 aa8.15□□□□□ -1.1
PNKP-217ENST00000625216 LINC00528Q8N1L1 170 aa8.15□□□□□ -1.1
PNKP-217ENST00000625216 LITAFQ99732 161 aa8.15□□□□□ -1.1
PNKP-217ENST00000625216 CXCL5P42830 114 aa8.14□□□□□ -1.11
PNKP-217ENST00000625216 HERV-K104P63124 156 aa8.14□□□□□ -1.11
PNKP-217ENST00000625216 CIRBP-AS1Q8TBR5 109 aa8.14□□□□□ -1.11
PNKP-217ENST00000625216 CNBPP62633 177 aaKnown RBP8.13□□□□□ -1.11
PNKP-217ENST00000625216 C10orf25Q5T742 122 aa8.13□□□□□ -1.11
PNKP-217ENST00000625216 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.12□□□□□ -1.11
PNKP-217ENST00000625216 TIMM17BO60830 172 aa8.12□□□□□ -1.11
PNKP-217ENST00000625216 CKS1BP61024 79 aa8.12□□□□□ -1.11
PNKP-217ENST00000625216 HSD52Q0P140 79 aa8.12□□□□□ -1.11
PNKP-217ENST00000625216 UNQ6190/PRO20217Q6UXQ8 127 aa8.12□□□□□ -1.11
PNKP-217ENST00000625216 SPANXB1Q9NS25 103 aaPredicted RBP8.12□□□□□ -1.11
PNKP-217ENST00000625216 DMBT1Q9UGM3 2413 aaPredicted RBP8.12□□□□□ -1.11
PNKP-217ENST00000625216 ZNF561-AS1K7EIQ3 104 aa8.11□□□□□ -1.11
PNKP-217ENST00000625216 SMIM13P0DJ93 91 aa8.11□□□□□ -1.11
PNKP-217ENST00000625216 MEIG1Q5JSS6 88 aa8.11□□□□□ -1.11
PNKP-217ENST00000625216 ADAMTSL4-AS1Q5T5F5 129 aa8.11□□□□□ -1.11
PNKP-217ENST00000625216 SFTA2Q6UW10 78 aa8.11□□□□□ -1.11
PNKP-217ENST00000625216 SDIM1Q6ZPB5 146 aa8.11□□□□□ -1.11
PNKP-217ENST00000625216 C2orf48Q96LS8 159 aa8.11□□□□□ -1.11
PNKP-217ENST00000625216 FLG2Q5D862 2391 aaPredicted RBP8.11□□□□□ -1.11
PNKP-217ENST00000625216 A0A0U1RRA0 63 aa8.1□□□□□ -1.11
PNKP-217ENST00000625216 TMEM238C9JI98 176 aa8.1□□□□□ -1.11
PNKP-217ENST00000625216 Q6ZRU5 148 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms