RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 CFAP161Q6P656 301 aa7.79□□□□□ -1.16
PDPN-211ENST00000617617 SPANXB1Q9NS25 103 aaPredicted RBP7.79□□□□□ -1.16
PDPN-211ENST00000617617 NDUFA12Q9UI09 145 aa7.79□□□□□ -1.16
PDPN-211ENST00000617617 TENM2Q9NT68 2774 aa7.79□□□□□ -1.16
PDPN-211ENST00000617617 TGP01266 2768 aa7.78□□□□□ -1.16
PDPN-211ENST00000617617 IGKV2D-24A0A075B6R9 120 aa7.78□□□□□ -1.16
PDPN-211ENST00000617617 TAL2Q16559 108 aa7.78□□□□□ -1.16
PDPN-211ENST00000617617 C15orf56Q8N910 161 aa7.78□□□□□ -1.16
PDPN-211ENST00000617617 C2orf48Q96LS8 159 aa7.78□□□□□ -1.16
PDPN-211ENST00000617617 A0A0J9YXY3 114 aa7.77□□□□□ -1.17
PDPN-211ENST00000617617 Q6ZRN7 208 aaPredicted RBP7.77□□□□□ -1.17
PDPN-211ENST00000617617 TTTY13Q9BZ97 58 aa7.77□□□□□ -1.17
PDPN-211ENST00000617617 HNRNPA3P51991 378 aaKnown RBP7.77□□□□□ -1.17
PDPN-211ENST00000617617 NTN5Q8WTR8 489 aaPredicted RBP7.77□□□□□ -1.17
PDPN-211ENST00000617617 PRSS2P07478 247 aa7.76□□□□□ -1.17
PDPN-211ENST00000617617 Q6ZVH6 145 aa7.76□□□□□ -1.17
PDPN-211ENST00000617617 LITAFQ99732 161 aa7.76□□□□□ -1.17
PDPN-211ENST00000617617 SPANXDQ9BXN6 97 aa7.75□□□□□ -1.17
PDPN-211ENST00000617617 SPANXCQ9NY87 97 aa7.75□□□□□ -1.17
PDPN-211ENST00000617617 TP73-AS1Q9UF72 201 aa7.75□□□□□ -1.17
PDPN-211ENST00000617617 COX17Q14061 63 aa7.75□□□□□ -1.17
PDPN-211ENST00000617617 Q9HAA7 133 aa7.75□□□□□ -1.17
PDPN-211ENST00000617617 A6NJY4 79 aa7.74□□□□□ -1.17
PDPN-211ENST00000617617 SPAG11BQ08648 103 aa7.74□□□□□ -1.17
PDPN-211ENST00000617617 HSD52Q0P140 79 aa7.74□□□□□ -1.17
PDPN-211ENST00000617617 C6orf226Q5I0X4 101 aa7.74□□□□□ -1.17
PDPN-211ENST00000617617 DNAH2Q9P225 4427 aa7.74□□□□□ -1.17
PDPN-211ENST00000617617 FRAS1Q86XX4 4008 aa7.74□□□□□ -1.17
PDPN-211ENST00000617617 TRBV30A0A0K0K1B3 111 aa7.73□□□□□ -1.17
PDPN-211ENST00000617617 KMT2AQ03164 3969 aa7.73□□□□□ -1.17
PDPN-211ENST00000617617 GCSHP23434 173 aa7.72□□□□□ -1.17
PDPN-211ENST00000617617 C14orf177Q52M58 125 aa7.72□□□□□ -1.17
PDPN-211ENST00000617617 OCIAD2Q56VL3 154 aa7.72□□□□□ -1.17
PDPN-211ENST00000617617 SCGB1D4Q6XE38 83 aa7.72□□□□□ -1.17
PDPN-211ENST00000617617 USP17L23D6RBM5 183 aa7.72□□□□□ -1.17
PDPN-211ENST00000617617 CKS1BP61024 79 aa7.72□□□□□ -1.17
PDPN-211ENST00000617617 CIRBPQ14011 172 aaKnown RBP7.72□□□□□ -1.17
PDPN-211ENST00000617617 C6orf223Q8N319 242 aa7.72□□□□□ -1.17
PDPN-211ENST00000617617 TOMM7Q9P0U1 55 aa7.72□□□□□ -1.17
PDPN-211ENST00000617617 LOC107984156A0A0G2JMH3 177 aa7.71□□□□□ -1.17
PDPN-211ENST00000617617 LRCOL1A6NCL2 159 aa7.71□□□□□ -1.17
PDPN-211ENST00000617617 ARL17AQ8IVW1 177 aa7.71□□□□□ -1.17
PDPN-211ENST00000617617 IFITM1P13164 125 aa7.71□□□□□ -1.18
PDPN-211ENST00000617617 DNAH10Q8IVF4 4471 aa7.71□□□□□ -1.18
PDPN-211ENST00000617617 ZNF561-AS1K7EIQ3 104 aa7.7□□□□□ -1.18
PDPN-211ENST00000617617 COPS9Q8WXC6 57 aa7.7□□□□□ -1.18
PDPN-211ENST00000617617 LY6G6CO95867 125 aa7.7□□□□□ -1.18
PDPN-211ENST00000617617 ERG28Q9UKR5 140 aa7.7□□□□□ -1.18
PDPN-211ENST00000617617 DNAH17Q9UFH2 4485 aa7.7□□□□□ -1.18
PDPN-211ENST00000617617 CNBPP62633 177 aaKnown RBP7.7□□□□□ -1.18
PDPN-211ENST00000617617 CEND1Q8N111 149 aa7.69□□□□□ -1.18
PDPN-211ENST00000617617 TLX1NBP0CAT3 122 aa7.69□□□□□ -1.18
PDPN-211ENST00000617617 ADAMTSL4-AS1Q5T5F5 129 aa7.69□□□□□ -1.18
PDPN-211ENST00000617617 K7ERU9 68 aa7.68□□□□□ -1.18
PDPN-211ENST00000617617 C2orf82Q6UX34 121 aa7.68□□□□□ -1.18
PDPN-211ENST00000617617 LCE6AA0A183 80 aa7.68□□□□□ -1.18
PDPN-211ENST00000617617 VAMP3Q15836 100 aa7.68□□□□□ -1.18
PDPN-211ENST00000617617 BVES-AS1Q5T3Y7 98 aa7.68□□□□□ -1.18
PDPN-211ENST00000617617 C6orf48Q9UBA6 75 aa7.68□□□□□ -1.18
PDPN-211ENST00000617617 PSCAO43653 123 aa7.67□□□□□ -1.18
PDPN-211ENST00000617617 UNQ6190/PRO20217Q6UXQ8 127 aa7.67□□□□□ -1.18
PDPN-211ENST00000617617 CAMK2N2Q96S95 79 aa7.67□□□□□ -1.18
PDPN-211ENST00000617617 SYCNQ0VAF6 134 aa7.67□□□□□ -1.18
PDPN-211ENST00000617617 C10orf25Q5T742 122 aa7.67□□□□□ -1.18
PDPN-211ENST00000617617 C1orf134Q5TEV5 83 aa7.67□□□□□ -1.18
PDPN-211ENST00000617617 HIST1H4GQ99525 98 aa7.67□□□□□ -1.18
PDPN-211ENST00000617617 SMIM13P0DJ93 91 aa7.66□□□□□ -1.18
PDPN-211ENST00000617617 HIGD2BQ4VC39 106 aa7.66□□□□□ -1.18
PDPN-211ENST00000617617 MEIG1Q5JSS6 88 aa7.66□□□□□ -1.18
PDPN-211ENST00000617617 HINT1P49773 126 aaPredicted RBP7.66□□□□□ -1.18
PDPN-211ENST00000617617 SACSQ9NZJ4 4579 aa7.66□□□□□ -1.18
PDPN-211ENST00000617617 A0A1B0GWB2 263 aa7.65□□□□□ -1.18
PDPN-211ENST00000617617 Q6ZRU5 148 aa7.65□□□□□ -1.18
PDPN-211ENST00000617617 SLPIP03973 132 aa7.65□□□□□ -1.18
PDPN-211ENST00000617617 SRSF9Q13242 221 aaKnown RBP eCLIP7.65□□□□□ -1.18
PDPN-211ENST00000617617 WFDC2Q14508 124 aa7.65□□□□□ -1.18
PDPN-211ENST00000617617 LINC00308Q8TCZ7 52 aa7.65□□□□□ -1.18
PDPN-211ENST00000617617 CARD19Q96LW7 228 aa7.65□□□□□ -1.18
PDPN-211ENST00000617617 RPL24P83731 157 aaKnown RBP7.65□□□□□ -1.19
PDPN-211ENST00000617617 PKIGQ9Y2B9 76 aa7.65□□□□□ -1.19
PDPN-211ENST00000617617 HECTD4Q9Y4D8 3996 aa7.64□□□□□ -1.19
PDPN-211ENST00000617617 M0R2N4 97 aa7.64□□□□□ -1.19
PDPN-211ENST00000617617 HYDINQ4G0P3 5121 aa7.63□□□□□ -1.19
PDPN-211ENST00000617617 A0A087WTM6 91 aa7.63□□□□□ -1.19
PDPN-211ENST00000617617 NDUFC2-KCTD14E9PQ53 114 aa7.63□□□□□ -1.19
PDPN-211ENST00000617617 MUSTN1Q8IVN3 82 aa7.63□□□□□ -1.19
PDPN-211ENST00000617617 MIR7-3HGQ8N6C7 128 aa7.63□□□□□ -1.19
PDPN-211ENST00000617617 Q8N814 137 aa7.63□□□□□ -1.19
PDPN-211ENST00000617617 LINC00158P58513 81 aa7.63□□□□□ -1.19
PDPN-211ENST00000617617 LINC00526Q96FQ7 95 aa7.62□□□□□ -1.19
PDPN-211ENST00000617617 NDUFC2O95298 119 aa7.62□□□□□ -1.19
PDPN-211ENST00000617617 FXYD2P54710 66 aa7.62□□□□□ -1.19
PDPN-211ENST00000617617 SOSTDC1Q6X4U4 206 aa7.62□□□□□ -1.19
PDPN-211ENST00000617617 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.61□□□□□ -1.19
PDPN-211ENST00000617617 A0A0B4J2C4 111 aa7.61□□□□□ -1.19
PDPN-211ENST00000617617 A6NDN8 102 aa7.61□□□□□ -1.19
PDPN-211ENST00000617617 PLA2G2DQ9UNK4 145 aa7.61□□□□□ -1.19
PDPN-211ENST00000617617 SND1-IT1Q9HBX3 110 aa7.6□□□□□ -1.19
PDPN-211ENST00000617617 PFN2P35080 140 aa7.6□□□□□ -1.19
PDPN-211ENST00000617617 C9orf116Q5BN46 136 aaPredicted RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms