RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 FAT3Q8TDW7 4589 aa8.53□□□□□ -1.04
LINC00540-202ENST00000616974 IGLV5-45A0A087WSX0 123 aa8.53□□□□□ -1.04
LINC00540-202ENST00000616974 FABP4P15090 132 aa8.53□□□□□ -1.04
LINC00540-202ENST00000616974 MAJINQ3KP22 176 aa8.53□□□□□ -1.04
LINC00540-202ENST00000616974 LINC00528Q8N1L1 170 aa8.53□□□□□ -1.04
LINC00540-202ENST00000616974 ZNF22P17026 224 aaPredicted RBP8.52□□□□□ -1.05
LINC00540-202ENST00000616974 KRTAP10-4P60372 401 aaPredicted RBP8.52□□□□□ -1.05
LINC00540-202ENST00000616974 GAGE2BQ13066 116 aa8.52□□□□□ -1.05
LINC00540-202ENST00000616974 C2orf48Q96LS8 159 aa8.52□□□□□ -1.05
LINC00540-202ENST00000616974 IGLC3P0DOY3 106 aa8.51□□□□□ -1.05
LINC00540-202ENST00000616974 Q6ZRP5 223 aa8.51□□□□□ -1.05
LINC00540-202ENST00000616974 IFI27L1Q96BM0 104 aa8.51□□□□□ -1.05
LINC00540-202ENST00000616974 EPM2AB3EWF7 344 aa8.51□□□□□ -1.05
LINC00540-202ENST00000616974 A0A1W2PNN7 141 aa8.5□□□□□ -1.05
LINC00540-202ENST00000616974 FAM168BA1KXE4 195 aa8.5□□□□□ -1.05
LINC00540-202ENST00000616974 RPL18AQ02543 176 aaKnown RBP8.5□□□□□ -1.05
LINC00540-202ENST00000616974 DPH3Q96FX2 82 aa8.5□□□□□ -1.05
LINC00540-202ENST00000616974 PMCHL2Q9BQD1 86 aa8.5□□□□□ -1.05
LINC00540-202ENST00000616974 MRPL35Q9NZE8 188 aaKnown RBP8.5□□□□□ -1.05
LINC00540-202ENST00000616974 STPG4Q8N801 248 aa8.5□□□□□ -1.05
LINC00540-202ENST00000616974 NDUFA1O15239 70 aa8.49□□□□□ -1.05
LINC00540-202ENST00000616974 ATP5LO75964 103 aa8.49□□□□□ -1.05
LINC00540-202ENST00000616974 PTTG1IPP53801 180 aa8.49□□□□□ -1.05
LINC00540-202ENST00000616974 LINC01549A6NIU2 74 aa8.48□□□□□ -1.05
LINC00540-202ENST00000616974 KRTAP7-1Q8IUC3 87 aa8.48□□□□□ -1.05
LINC00540-202ENST00000616974 PACRGQ96M98 296 aaPredicted RBP8.48□□□□□ -1.05
LINC00540-202ENST00000616974 LEPROTL1O95214 131 aa8.48□□□□□ -1.05
LINC00540-202ENST00000616974 HNRNPA3P51991 378 aaKnown RBP8.48□□□□□ -1.05
LINC00540-202ENST00000616974 GAGE2EQ4V326 116 aa8.48□□□□□ -1.05
LINC00540-202ENST00000616974 GAGE2DQ9UEU5 116 aa8.48□□□□□ -1.05
LINC00540-202ENST00000616974 CHTOPQ9Y3Y2 248 aaKnown RBP8.48□□□□□ -1.05
LINC00540-202ENST00000616974 S100A1P23297 94 aa8.47□□□□□ -1.05
LINC00540-202ENST00000616974 SEC11AP67812 179 aa8.47□□□□□ -1.05
LINC00540-202ENST00000616974 C6orf226Q5I0X4 101 aa8.47□□□□□ -1.05
LINC00540-202ENST00000616974 Q8IZM0 81 aa8.47□□□□□ -1.05
LINC00540-202ENST00000616974 PLAC8Q9NZF1 115 aa8.47□□□□□ -1.05
LINC00540-202ENST00000616974 ODF1Q14990 250 aa8.47□□□□□ -1.05
LINC00540-202ENST00000616974 LINC01561Q8N1V8 128 aa8.47□□□□□ -1.05
LINC00540-202ENST00000616974 LOC107984640A0A0U1RRK4 108 aa8.46□□□□□ -1.06
LINC00540-202ENST00000616974 TMEM170BQ5T4T1 132 aa8.46□□□□□ -1.06
LINC00540-202ENST00000616974 COX7B2Q8TF08 81 aa8.46□□□□□ -1.06
LINC00540-202ENST00000616974 IGLV5-39A0A0G2JS06 123 aa8.45□□□□□ -1.06
LINC00540-202ENST00000616974 PRSS2P07478 247 aa8.45□□□□□ -1.06
LINC00540-202ENST00000616974 C9orf129Q5T035 196 aaKnown RBP8.45□□□□□ -1.06
LINC00540-202ENST00000616974 KRTAP11-1Q8IUC1 163 aa8.45□□□□□ -1.06
LINC00540-202ENST00000616974 TRAV12-1A0A0B4J245 112 aa8.44□□□□□ -1.06
LINC00540-202ENST00000616974 CKS1BP61024 79 aa8.44□□□□□ -1.06
LINC00540-202ENST00000616974 F8VRH5 84 aa8.44□□□□□ -1.06
LINC00540-202ENST00000616974 FAM229AH3BQW9 127 aa8.44□□□□□ -1.06
LINC00540-202ENST00000616974 ZNF625Q96I27 306 aaPredicted RBP8.44□□□□□ -1.06
LINC00540-202ENST00000616974 XAGE1AQ9HD64 81 aa8.44□□□□□ -1.06
LINC00540-202ENST00000616974 RNF151Q2KHN1 245 aa8.42□□□□□ -1.06
LINC00540-202ENST00000616974 TRBV30A0A0K0K1B3 111 aa8.42□□□□□ -1.06
LINC00540-202ENST00000616974 PHF5AQ7RTV0 110 aaKnown RBP8.42□□□□□ -1.06
LINC00540-202ENST00000616974 TMEM223A0PJW6 202 aa8.41□□□□□ -1.06
LINC00540-202ENST00000616974 NDUFC2-KCTD14E9PQ53 114 aa8.41□□□□□ -1.06
LINC00540-202ENST00000616974 TLX1NBP0CAT3 122 aa8.41□□□□□ -1.06
LINC00540-202ENST00000616974 TSPEAR-AS2P59090 65 aa8.41□□□□□ -1.06
LINC00540-202ENST00000616974 FAM19A5Q7Z5A7 132 aaPredicted RBP8.41□□□□□ -1.06
LINC00540-202ENST00000616974 SERTAD4-AS1Q5TG53 156 aa8.41□□□□□ -1.06
LINC00540-202ENST00000616974 H3BRM9 83 aa8.4□□□□□ -1.06
LINC00540-202ENST00000616974 INAFM2P0DMQ5 153 aa8.39□□□□□ -1.07
LINC00540-202ENST00000616974 RPL37AP61513 92 aaKnown RBP8.39□□□□□ -1.07
LINC00540-202ENST00000616974 COA6Q5JTJ3 125 aaKnown RBP8.39□□□□□ -1.07
LINC00540-202ENST00000616974 PFN2P35080 140 aa8.38□□□□□ -1.07
LINC00540-202ENST00000616974 HSPB8Q9UJY1 196 aa8.38□□□□□ -1.07
LINC00540-202ENST00000616974 TNXBP22105 4242 aa8.38□□□□□ -1.07
LINC00540-202ENST00000616974 A0A0U1RRA0 63 aa8.38□□□□□ -1.07
LINC00540-202ENST00000616974 F8WDY8 70 aa8.38□□□□□ -1.07
LINC00540-202ENST00000616974 Q8NDZ9 215 aa8.38□□□□□ -1.07
LINC00540-202ENST00000616974 SYS1-DBNDD2H3BUS1 97 aa8.37□□□□□ -1.07
LINC00540-202ENST00000616974 LINC00474Q9P2X8 69 aa8.37□□□□□ -1.07
LINC00540-202ENST00000616974 C3orf79P0CE67 100 aa8.36□□□□□ -1.07
LINC00540-202ENST00000616974 PLA2G1BP04054 148 aaKnown RBP8.36□□□□□ -1.07
LINC00540-202ENST00000616974 CXCL5P42830 114 aa8.35□□□□□ -1.07
LINC00540-202ENST00000616974 MAP1LC3CQ9BXW4 147 aa8.35□□□□□ -1.07
LINC00540-202ENST00000616974 DPM2O94777 84 aa8.34□□□□□ -1.07
LINC00540-202ENST00000616974 PRR3P79522 188 aaKnown RBP8.34□□□□□ -1.07
LINC00540-202ENST00000616974 IGKCP01834 107 aa8.33□□□□□ -1.08
LINC00540-202ENST00000616974 PSORS1C2Q9UIG4 136 aa8.33□□□□□ -1.08
LINC00540-202ENST00000616974 M0QXV9 152 aa8.33□□□□□ -1.08
LINC00540-202ENST00000616974 KRTDAPP60985 99 aa8.33□□□□□ -1.08
LINC00540-202ENST00000616974 ERG28Q9UKR5 140 aa8.33□□□□□ -1.08
LINC00540-202ENST00000616974 LINC01545Q5VT33 79 aa8.32□□□□□ -1.08
LINC00540-202ENST00000616974 HIST3H2BBQ8N257 126 aa8.32□□□□□ -1.08
LINC00540-202ENST00000616974 TTTY13Q9BZ97 58 aa8.32□□□□□ -1.08
LINC00540-202ENST00000616974 PLNP26678 52 aa8.32□□□□□ -1.08
LINC00540-202ENST00000616974 ATOH7Q8N100 152 aa8.32□□□□□ -1.08
LINC00540-202ENST00000616974 C7orf33Q8WU49 177 aa8.32□□□□□ -1.08
LINC00540-202ENST00000616974 IGKV2D-26A0A0A0MRZ7 120 aa8.31□□□□□ -1.08
LINC00540-202ENST00000616974 DAND5Q8N907 189 aa8.31□□□□□ -1.08
LINC00540-202ENST00000616974 SMIM13P0DJ93 91 aa8.3□□□□□ -1.08
LINC00540-202ENST00000616974 SND1-IT1Q9HBX3 110 aa8.3□□□□□ -1.08
LINC00540-202ENST00000616974 NDUFA12Q9UI09 145 aa8.3□□□□□ -1.08
LINC00540-202ENST00000616974 C22orf24Q9Y442 160 aa8.3□□□□□ -1.08
LINC00540-202ENST00000616974 GAGE10A6NGK3 116 aa8.3□□□□□ -1.08
LINC00540-202ENST00000616974 HIST1H2BLQ99880 126 aa8.3□□□□□ -1.08
LINC00540-202ENST00000616974 PKIGQ9Y2B9 76 aa8.3□□□□□ -1.08
LINC00540-202ENST00000616974 SNRPEP62304 92 aaKnown RBP8.29□□□□□ -1.08
LINC00540-202ENST00000616974 RPL37AP8A6NKH3 93 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms