RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 TRAV12-1A0A0B4J245 112 aa10.61□□□□□ -0.71
CCDC28A-202ENST00000611852 ODF1Q14990 250 aa10.61□□□□□ -0.71
CCDC28A-202ENST00000611852 Q6ZRU5 148 aa10.61□□□□□ -0.71
CCDC28A-202ENST00000611852 LINC00469Q8N7U9 141 aa10.61□□□□□ -0.71
CCDC28A-202ENST00000611852 PMCHL2Q9BQD1 86 aa10.61□□□□□ -0.71
CCDC28A-202ENST00000611852 KRTAP17-1Q9BYP8 105 aa10.61□□□□□ -0.71
CCDC28A-202ENST00000611852 KIAA0087Q14695 138 aa10.6□□□□□ -0.71
CCDC28A-202ENST00000611852 CHAC1Q9BUX1 264 aa10.6□□□□□ -0.71
CCDC28A-202ENST00000611852 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.6□□□□□ -0.71
CCDC28A-202ENST00000611852 PCP4L1A6NKN8 68 aa10.59□□□□□ -0.71
CCDC28A-202ENST00000611852 PANO1I0J062 215 aa10.59□□□□□ -0.71
CCDC28A-202ENST00000611852 IGLC3P0DOY3 106 aa10.59□□□□□ -0.71
CCDC28A-202ENST00000611852 SPATA45Q537H7 98 aa10.59□□□□□ -0.71
CCDC28A-202ENST00000611852 SCXQ7RTU7 201 aa10.59□□□□□ -0.71
CCDC28A-202ENST00000611852 DNAH8Q96JB1 4490 aa10.59□□□□□ -0.71
CCDC28A-202ENST00000611852 F8WDY8 70 aa10.58□□□□□ -0.72
CCDC28A-202ENST00000611852 DPM2O94777 84 aa10.58□□□□□ -0.72
CCDC28A-202ENST00000611852 PLNP26678 52 aa10.58□□□□□ -0.72
CCDC28A-202ENST00000611852 F8VRH5 84 aa10.58□□□□□ -0.72
CCDC28A-202ENST00000611852 CIRBP-AS1Q8TBR5 109 aa10.58□□□□□ -0.72
CCDC28A-202ENST00000611852 PRO1933Q9H354 126 aa10.58□□□□□ -0.72
CCDC28A-202ENST00000611852 CHTOPQ9Y3Y2 248 aaKnown RBP10.58□□□□□ -0.72
CCDC28A-202ENST00000611852 SMIM1B2RUZ4 78 aa10.57□□□□□ -0.72
CCDC28A-202ENST00000611852 NDUFA1O15239 70 aa10.57□□□□□ -0.72
CCDC28A-202ENST00000611852 IGKCP01834 107 aa10.57□□□□□ -0.72
CCDC28A-202ENST00000611852 CIRBPQ14011 172 aaKnown RBP10.57□□□□□ -0.72
CCDC28A-202ENST00000611852 MRPL35Q9NZE8 188 aaKnown RBP10.57□□□□□ -0.72
CCDC28A-202ENST00000611852 CHTF8P0CG12 524 aa10.56□□□□□ -0.72
CCDC28A-202ENST00000611852 C10orf25Q5T742 122 aa10.56□□□□□ -0.72
CCDC28A-202ENST00000611852 UNQ6190/PRO20217Q6UXQ8 127 aa10.56□□□□□ -0.72
CCDC28A-202ENST00000611852 Q8IZM0 81 aa10.56□□□□□ -0.72
CCDC28A-202ENST00000611852 Q8N1X5 172 aa10.56□□□□□ -0.72
CCDC28A-202ENST00000611852 TOMM7Q9P0U1 55 aa10.56□□□□□ -0.72
CCDC28A-202ENST00000611852 SMR3BP02814 79 aaPredicted RBP10.55□□□□□ -0.72
CCDC28A-202ENST00000611852 RNF151Q2KHN1 245 aa10.55□□□□□ -0.72
CCDC28A-202ENST00000611852 MAJINQ3KP22 176 aa10.55□□□□□ -0.72
CCDC28A-202ENST00000611852 C2orf82Q6UX34 121 aa10.55□□□□□ -0.72
CCDC28A-202ENST00000611852 PKIGQ9Y2B9 76 aa10.55□□□□□ -0.72
CCDC28A-202ENST00000611852 A0A096LNI7 61 aa10.54□□□□□ -0.72
CCDC28A-202ENST00000611852 H3BRM9 83 aa10.54□□□□□ -0.72
CCDC28A-202ENST00000611852 PRSS2P07478 247 aa10.54□□□□□ -0.72
CCDC28A-202ENST00000611852 ZNF22P17026 224 aaPredicted RBP10.54□□□□□ -0.72
CCDC28A-202ENST00000611852 SPACA4Q8TDM5 124 aa10.54□□□□□ -0.72
CCDC28A-202ENST00000611852 IGKV2-24A0A0C4DH68 120 aa10.53□□□□□ -0.72
CCDC28A-202ENST00000611852 C11orf86A6NJI1 115 aa10.53□□□□□ -0.72
CCDC28A-202ENST00000611852 SPINK8P0C7L1 97 aa10.53□□□□□ -0.72
CCDC28A-202ENST00000611852 C6orf226Q5I0X4 101 aa10.53□□□□□ -0.72
CCDC28A-202ENST00000611852 C6orf48Q9UBA6 75 aa10.53□□□□□ -0.72
CCDC28A-202ENST00000611852 LOC107984640A0A0U1RRK4 108 aa10.53□□□□□ -0.72
CCDC28A-202ENST00000611852 CKS1BP61024 79 aa10.52□□□□□ -0.73
CCDC28A-202ENST00000611852 TRBV30A0A0K0K1B3 111 aa10.51□□□□□ -0.73
CCDC28A-202ENST00000611852 COX7B2Q8TF08 81 aa10.51□□□□□ -0.73
CCDC28A-202ENST00000611852 DPH3Q96FX2 82 aa10.51□□□□□ -0.73
CCDC28A-202ENST00000611852 A0A087WYN8 130 aa10.5□□□□□ -0.73
CCDC28A-202ENST00000611852 DDTP30046 118 aa10.5□□□□□ -0.73
CCDC28A-202ENST00000611852 PTTG1IPP53801 180 aa10.5□□□□□ -0.73
CCDC28A-202ENST00000611852 TMEM170BQ5T4T1 132 aa10.5□□□□□ -0.73
CCDC28A-202ENST00000611852 KRTAP4-5Q9BYR2 181 aa10.5□□□□□ -0.73
CCDC28A-202ENST00000611852 LINC00474Q9P2X8 69 aa10.5□□□□□ -0.73
CCDC28A-202ENST00000611852 UQCR10Q9UDW1 63 aa10.5□□□□□ -0.73
CCDC28A-202ENST00000611852 IGLV5-39A0A0G2JS06 123 aa10.49□□□□□ -0.73
CCDC28A-202ENST00000611852 GAGE2BQ13066 116 aa10.49□□□□□ -0.73
CCDC28A-202ENST00000611852 STPG4Q8N801 248 aa10.49□□□□□ -0.73
CCDC28A-202ENST00000611852 MIEN1Q9BRT3 115 aa10.49□□□□□ -0.73
CCDC28A-202ENST00000611852 TLX1NBP0CAT3 122 aa10.48□□□□□ -0.73
CCDC28A-202ENST00000611852 CXCL5P42830 114 aa10.48□□□□□ -0.73
CCDC28A-202ENST00000611852 RPL18AQ02543 176 aaKnown RBP10.48□□□□□ -0.73
CCDC28A-202ENST00000611852 EPM2AB3EWF7 344 aa10.48□□□□□ -0.73
CCDC28A-202ENST00000611852 ANKRD39Q53RE8 183 aa10.48□□□□□ -0.73
CCDC28A-202ENST00000611852 C9orf116Q5BN46 136 aaPredicted RBP10.48□□□□□ -0.73
CCDC28A-202ENST00000611852 Q5VSD8 79 aa10.48□□□□□ -0.73
CCDC28A-202ENST00000611852 LINC00528Q8N1L1 170 aa10.48□□□□□ -0.73
CCDC28A-202ENST00000611852 PLAC8Q9NZF1 115 aa10.48□□□□□ -0.73
CCDC28A-202ENST00000611852 Q6ZRP5 223 aa10.47□□□□□ -0.73
CCDC28A-202ENST00000611852 C14orf144Q96I85 54 aa10.47□□□□□ -0.73
CCDC28A-202ENST00000611852 FAT1Q14517 4588 aa10.46□□□□□ -0.74
CCDC28A-202ENST00000611852 FAM229AH3BQW9 127 aa10.46□□□□□ -0.74
CCDC28A-202ENST00000611852 HERVK_113P61574 105 aa10.46□□□□□ -0.74
CCDC28A-202ENST00000611852 TMEM223A0PJW6 202 aa10.45□□□□□ -0.74
CCDC28A-202ENST00000611852 NDUFC2-KCTD14E9PQ53 114 aa10.45□□□□□ -0.74
CCDC28A-202ENST00000611852 NMUP48645 174 aa10.45□□□□□ -0.74
CCDC28A-202ENST00000611852 SLC25A34Q6PIV7 304 aa10.45□□□□□ -0.74
CCDC28A-202ENST00000611852 COX8AP10176 69 aa10.44□□□□□ -0.74
CCDC28A-202ENST00000611852 LINC00587B1AMM8 73 aa10.43□□□□□ -0.74
CCDC28A-202ENST00000611852 HNRNPA3P51991 378 aaKnown RBP10.43□□□□□ -0.74
CCDC28A-202ENST00000611852 GAGE2EQ4V326 116 aa10.43□□□□□ -0.74
CCDC28A-202ENST00000611852 GAGE2DQ9UEU5 116 aa10.43□□□□□ -0.74
CCDC28A-202ENST00000611852 A0A1W2PNN7 141 aa10.41□□□□□ -0.74
CCDC28A-202ENST00000611852 E9PLD3 99 aa10.41□□□□□ -0.74
CCDC28A-202ENST00000611852 IGKV2D-26A0A0A0MRZ7 120 aa10.4□□□□□ -0.74
CCDC28A-202ENST00000611852 DLEU1O43261 78 aa10.4□□□□□ -0.74
CCDC28A-202ENST00000611852 PLA2G1BP04054 148 aaKnown RBP10.39□□□□□ -0.75
CCDC28A-202ENST00000611852 BOD1L2Q8IYS8 172 aa10.39□□□□□ -0.75
CCDC28A-202ENST00000611852 ABCA13Q86UQ4 5058 aa10.38□□□□□ -0.75
CCDC28A-202ENST00000611852 PCP2Q8IVA1 136 aa10.38□□□□□ -0.75
CCDC28A-202ENST00000611852 ZNF625Q96I27 306 aaPredicted RBP10.38□□□□□ -0.75
CCDC28A-202ENST00000611852 FAM168BA1KXE4 195 aa10.38□□□□□ -0.75
CCDC28A-202ENST00000611852 KRTAP10-4P60372 401 aaPredicted RBP10.38□□□□□ -0.75
CCDC28A-202ENST00000611852 C9orf129Q5T035 196 aaKnown RBP10.38□□□□□ -0.75
CCDC28A-202ENST00000611852 SFTA2Q6UW10 78 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 147.4 ms