RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 LINC01546A6NGU7 62 aa3.86□□□□□ -1.79
CUX1-220ENST00000607092 K7EMI3 77 aa3.86□□□□□ -1.79
CUX1-220ENST00000607092 SCGB1D1O95968 90 aa3.86□□□□□ -1.79
CUX1-220ENST00000607092 FCER1GP30273 86 aa3.86□□□□□ -1.79
CUX1-220ENST00000607092 UBE2D1P51668 147 aa3.86□□□□□ -1.79
CUX1-220ENST00000607092 SUMO2P61956 95 aaKnown RBP3.86□□□□□ -1.79
CUX1-220ENST00000607092 PMCHL1Q16048 86 aa3.86□□□□□ -1.79
CUX1-220ENST00000607092 MRPL51Q4U2R6 128 aaKnown RBP3.86□□□□□ -1.79
CUX1-220ENST00000607092 C9orf116Q5BN46 136 aaPredicted RBP3.86□□□□□ -1.79
CUX1-220ENST00000607092 FA2HQ7L5A8 372 aa3.86□□□□□ -1.79
CUX1-220ENST00000607092 PRELID3AQ96N28 172 aa3.86□□□□□ -1.79
CUX1-220ENST00000607092 NXT2Q9NPJ8 142 aaKnown RBP3.86□□□□□ -1.79
CUX1-220ENST00000607092 HSPB8Q9UJY1 196 aa3.86□□□□□ -1.79
CUX1-220ENST00000607092 TRBV27A0A0K0K1C4 114 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 C20orf202A1L168 122 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 LINC01549A6NIU2 74 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 D6R8Y8 96 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 TSTD3H0UI37 97 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 H0Y9J4 135 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 VCYO14598 125 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 IGLV7-43P04211 117 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 G0S2P27469 103 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 RPL18AQ02543 176 aaKnown RBP3.85□□□□□ -1.79
CUX1-220ENST00000607092 AMN1Q8IY45 258 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 URB1-AS1Q96HZ7 61 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 KIR2DL4Q99706 377 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 C20orf78Q9BR46 151 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 MAP1LC3AQ9H492 121 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 MRPL35Q9NZE8 188 aaKnown RBP3.85□□□□□ -1.79
CUX1-220ENST00000607092 FAT4Q6V0I7 4981 aa3.85□□□□□ -1.79
CUX1-220ENST00000607092 A0A087WZ39 114 aa3.84□□□□□ -1.79
CUX1-220ENST00000607092 LEPROTL1O95214 131 aa3.84□□□□□ -1.79
CUX1-220ENST00000607092 C3orf79P0CE67 100 aa3.84□□□□□ -1.79
CUX1-220ENST00000607092 RPL32P62910 135 aaKnown RBP3.84□□□□□ -1.79
CUX1-220ENST00000607092 PET117Q6UWS5 81 aa3.84□□□□□ -1.79
CUX1-220ENST00000607092 TEX43Q6ZNM6 134 aa3.84□□□□□ -1.79
CUX1-220ENST00000607092 FAM19A2Q8N3H0 131 aa3.84□□□□□ -1.79
CUX1-220ENST00000607092 Q8N8P6 123 aa3.84□□□□□ -1.79
CUX1-220ENST00000607092 RPL39LQ96EH5 51 aaKnown RBP3.84□□□□□ -1.79
CUX1-220ENST00000607092 A0A1W2PNN7 141 aa3.83□□□□□ -1.8
CUX1-220ENST00000607092 PCP4L1A6NKN8 68 aa3.83□□□□□ -1.8
CUX1-220ENST00000607092 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.83□□□□□ -1.8
CUX1-220ENST00000607092 NDUFA1O15239 70 aa3.83□□□□□ -1.8
CUX1-220ENST00000607092 TSHBP01222 138 aa3.83□□□□□ -1.8
CUX1-220ENST00000607092 IFI27P40305 119 aaPredicted RBP3.83□□□□□ -1.8
CUX1-220ENST00000607092 POLR2KP53803 58 aaKnown RBP3.83□□□□□ -1.8
CUX1-220ENST00000607092 KRTDAPP60985 99 aa3.83□□□□□ -1.8
CUX1-220ENST00000607092 SPAG11BQ08648 103 aa3.83□□□□□ -1.8
CUX1-220ENST00000607092 PRR4Q16378 134 aa3.83□□□□□ -1.8
CUX1-220ENST00000607092 LINC00526Q96FQ7 95 aa3.83□□□□□ -1.8
CUX1-220ENST00000607092 TIMM21Q9BVV7 248 aa3.83□□□□□ -1.8
CUX1-220ENST00000607092 MAP1LC3CQ9BXW4 147 aa3.83□□□□□ -1.8
CUX1-220ENST00000607092 SYS1-DBNDD2H3BUS1 97 aa3.82□□□□□ -1.8
CUX1-220ENST00000607092 NPYP01303 97 aa3.82□□□□□ -1.8
CUX1-220ENST00000607092 HBDP02042 147 aa3.82□□□□□ -1.8
CUX1-220ENST00000607092 TLX1NBP0CAT3 122 aa3.82□□□□□ -1.8
CUX1-220ENST00000607092 UBE2BP63146 152 aa3.82□□□□□ -1.8
CUX1-220ENST00000607092 PRR26Q8N8Z3 221 aa3.82□□□□□ -1.8
CUX1-220ENST00000607092 NRACQ8N912 160 aa3.82□□□□□ -1.8
CUX1-220ENST00000607092 TRAV13-1A0A0B4J241 112 aa3.81□□□□□ -1.8
CUX1-220ENST00000607092 LOC389332A0A1B0GUA5 103 aa3.81□□□□□ -1.8
CUX1-220ENST00000607092 ATP5LO75964 103 aa3.81□□□□□ -1.8
CUX1-220ENST00000607092 DDTP30046 118 aa3.81□□□□□ -1.8
CUX1-220ENST00000607092 ORMDL2Q53FV1 153 aa3.81□□□□□ -1.8
CUX1-220ENST00000607092 LBHQ53QV2 105 aaPredicted RBP3.81□□□□□ -1.8
CUX1-220ENST00000607092 PHF5AQ7RTV0 110 aaKnown RBP3.81□□□□□ -1.8
CUX1-220ENST00000607092 ORAOV1Q8WV07 137 aa3.81□□□□□ -1.8
CUX1-220ENST00000607092 IFI27L1Q96BM0 104 aa3.81□□□□□ -1.8
CUX1-220ENST00000607092 MIEN1Q9BRT3 115 aa3.81□□□□□ -1.8
CUX1-220ENST00000607092 VAMP8Q9BV40 100 aa3.81□□□□□ -1.8
CUX1-220ENST00000607092 UBE2D4Q9Y2X8 147 aa3.81□□□□□ -1.8
CUX1-220ENST00000607092 TRBV30A0A0K0K1B3 111 aa3.8□□□□□ -1.8
CUX1-220ENST00000607092 GAGE10A6NGK3 116 aa3.8□□□□□ -1.8
CUX1-220ENST00000607092 SMKR1H3BMG3 65 aa3.8□□□□□ -1.8
CUX1-220ENST00000607092 NPSP0C0P6 89 aa3.8□□□□□ -1.8
CUX1-220ENST00000607092 LINC01545Q5VT33 79 aa3.8□□□□□ -1.8
CUX1-220ENST00000607092 C5orf38Q86SI9 138 aa3.8□□□□□ -1.8
CUX1-220ENST00000607092 SMIM2Q9BVW6 85 aa3.8□□□□□ -1.8
CUX1-220ENST00000607092 SPANXA1Q9NS26 97 aa3.8□□□□□ -1.8
CUX1-220ENST00000607092 LPAP08519 4548 aa3.8□□□□□ -1.8
CUX1-220ENST00000607092 A0A096LNJ9 63 aa3.79□□□□□ -1.8
CUX1-220ENST00000607092 LINC00587B1AMM8 73 aa3.79□□□□□ -1.8
CUX1-220ENST00000607092 HSBP1L1C9JCN9 74 aa3.79□□□□□ -1.8
CUX1-220ENST00000607092 M0QXV9 152 aa3.79□□□□□ -1.8
CUX1-220ENST00000607092 PRYO14603 147 aa3.79□□□□□ -1.8
CUX1-220ENST00000607092 MRPS36P82909 103 aaKnown RBP3.79□□□□□ -1.8
CUX1-220ENST00000607092 FAM19A5Q7Z5A7 132 aaPredicted RBP3.79□□□□□ -1.8
CUX1-220ENST00000607092 OPRPNQ99935 248 aaPredicted RBP3.79□□□□□ -1.8
CUX1-220ENST00000607092 UQCR10Q9UDW1 63 aa3.79□□□□□ -1.8
CUX1-220ENST00000607092 IGHV3OR16-9A0A0B4J2B5 98 aa3.78□□□□□ -1.8
CUX1-220ENST00000607092 NDUFC2-KCTD14E9PQ53 114 aa3.78□□□□□ -1.8
CUX1-220ENST00000607092 ZNF861PO60384 105 aa3.78□□□□□ -1.8
CUX1-220ENST00000607092 RPL28P46779 137 aaKnown RBP3.78□□□□□ -1.8
CUX1-220ENST00000607092 CTAG1AP78358 180 aa3.78□□□□□ -1.8
CUX1-220ENST00000607092 SPATA45Q537H7 98 aa3.78□□□□□ -1.8
CUX1-220ENST00000607092 Q6ZUT4 128 aa3.78□□□□□ -1.8
CUX1-220ENST00000607092 LINC01561Q8N1V8 128 aa3.78□□□□□ -1.8
CUX1-220ENST00000607092 PMCHL2Q9BQD1 86 aa3.78□□□□□ -1.8
CUX1-220ENST00000607092 KRTAP9-2Q9BYQ4 174 aa3.78□□□□□ -1.8
CUX1-220ENST00000607092 PRO1933Q9H354 126 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms