RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.32□□□□□ -0.92
UPF1-211ENST00000600868 ANKRD39Q53RE8 183 aa9.32□□□□□ -0.92
UPF1-211ENST00000600868 UNQ6190/PRO20217Q6UXQ8 127 aa9.32□□□□□ -0.92
UPF1-211ENST00000600868 CARD19Q96LW7 228 aa9.32□□□□□ -0.92
UPF1-211ENST00000600868 TRBV30A0A0K0K1B3 111 aa9.31□□□□□ -0.92
UPF1-211ENST00000600868 TSPEAR-AS2P59090 65 aa9.31□□□□□ -0.92
UPF1-211ENST00000600868 KRTAP10-2P60368 255 aa9.31□□□□□ -0.92
UPF1-211ENST00000600868 RNF151Q2KHN1 245 aa9.31□□□□□ -0.92
UPF1-211ENST00000600868 MAJINQ3KP22 176 aa9.31□□□□□ -0.92
UPF1-211ENST00000600868 C10orf25Q5T742 122 aa9.31□□□□□ -0.92
UPF1-211ENST00000600868 CDPF1Q6NVV7 123 aa9.31□□□□□ -0.92
UPF1-211ENST00000600868 Q6ZRU5 148 aa9.31□□□□□ -0.92
UPF1-211ENST00000600868 IGKV2D-26A0A0A0MRZ7 120 aa9.3□□□□□ -0.92
UPF1-211ENST00000600868 IGLV5-52A0A0A0MRZ9 124 aa9.3□□□□□ -0.92
UPF1-211ENST00000600868 LGALS3P17931 250 aaKnown RBP9.3□□□□□ -0.92
UPF1-211ENST00000600868 NMUP48645 174 aa9.3□□□□□ -0.92
UPF1-211ENST00000600868 C9orf163Q8N9P6 203 aa9.3□□□□□ -0.92
UPF1-211ENST00000600868 ZNF625Q96I27 306 aaPredicted RBP9.3□□□□□ -0.92
UPF1-211ENST00000600868 NDUFA12Q9UI09 145 aa9.3□□□□□ -0.92
UPF1-211ENST00000600868 C6orf48Q9UBA6 75 aa9.29□□□□□ -0.92
UPF1-211ENST00000600868 RYR3Q15413 4870 aa9.29□□□□□ -0.92
UPF1-211ENST00000600868 PKD1P98161 4303 aa9.29□□□□□ -0.92
UPF1-211ENST00000600868 MYMXA0A1B0GTQ4 84 aa9.28□□□□□ -0.92
UPF1-211ENST00000600868 VAMP8Q9BV40 100 aa9.28□□□□□ -0.92
UPF1-211ENST00000600868 HECTD4Q9Y4D8 3996 aa9.28□□□□□ -0.92
UPF1-211ENST00000600868 FUSP35637 526 aaKnown RBP eCLIP9.27□□□□□ -0.93
UPF1-211ENST00000600868 HERV-K104P63124 156 aa9.27□□□□□ -0.93
UPF1-211ENST00000600868 DNAH11Q96DT5 4516 aa9.26□□□□□ -0.93
UPF1-211ENST00000600868 PAM16Q9Y3D7 125 aa9.26□□□□□ -0.93
UPF1-211ENST00000600868 TLX1NBP0CAT3 122 aa9.25□□□□□ -0.93
UPF1-211ENST00000600868 SMIM6P0DI80 62 aa9.25□□□□□ -0.93
UPF1-211ENST00000600868 C9orf116Q5BN46 136 aaPredicted RBP9.25□□□□□ -0.93
UPF1-211ENST00000600868 PKIGQ9Y2B9 76 aa9.25□□□□□ -0.93
UPF1-211ENST00000600868 ZNF815PA8K554 130 aa9.24□□□□□ -0.93
UPF1-211ENST00000600868 GCSHP23434 173 aa9.24□□□□□ -0.93
UPF1-211ENST00000600868 COX17Q14061 63 aa9.24□□□□□ -0.93
UPF1-211ENST00000600868 SPATA45Q537H7 98 aa9.24□□□□□ -0.93
UPF1-211ENST00000600868 SDIM1Q6ZPB5 146 aa9.24□□□□□ -0.93
UPF1-211ENST00000600868 PCP2Q8IVA1 136 aa9.24□□□□□ -0.93
UPF1-211ENST00000600868 TTTY13Q9BZ97 58 aa9.24□□□□□ -0.93
UPF1-211ENST00000600868 LOC107984640A0A0U1RRK4 108 aa9.23□□□□□ -0.93
UPF1-211ENST00000600868 LINC00587B1AMM8 73 aa9.23□□□□□ -0.93
UPF1-211ENST00000600868 LINC01620Q4KN68 170 aa9.23□□□□□ -0.93
UPF1-211ENST00000600868 ERG28Q9UKR5 140 aa9.23□□□□□ -0.93
UPF1-211ENST00000600868 A0A0J9YXY3 114 aa9.22□□□□□ -0.93
UPF1-211ENST00000600868 NDUFC2-KCTD14E9PQ53 114 aa9.22□□□□□ -0.93
UPF1-211ENST00000600868 S100A12P80511 92 aa9.22□□□□□ -0.93
UPF1-211ENST00000600868 COX8AP10176 69 aa9.21□□□□□ -0.94
UPF1-211ENST00000600868 C16orf90A8MZG2 172 aa9.2□□□□□ -0.94
UPF1-211ENST00000600868 DLEU1O43261 78 aa9.2□□□□□ -0.94
UPF1-211ENST00000600868 PFN2P35080 140 aa9.2□□□□□ -0.94
UPF1-211ENST00000600868 MEIG1Q5JSS6 88 aa9.2□□□□□ -0.94
UPF1-211ENST00000600868 BOD1L2Q8IYS8 172 aa9.2□□□□□ -0.94
UPF1-211ENST00000600868 TIMM17BO60830 172 aa9.19□□□□□ -0.94
UPF1-211ENST00000600868 SMIM13P0DJ93 91 aa9.19□□□□□ -0.94
UPF1-211ENST00000600868 PTTG1IPP53801 180 aa9.19□□□□□ -0.94
UPF1-211ENST00000600868 LINC00158P58513 81 aa9.19□□□□□ -0.94
UPF1-211ENST00000600868 KRTAP10-1P60331 282 aa9.19□□□□□ -0.94
UPF1-211ENST00000600868 RPL18AQ02543 176 aaKnown RBP9.19□□□□□ -0.94
UPF1-211ENST00000600868 CIRBPQ14011 172 aaKnown RBP9.19□□□□□ -0.94
UPF1-211ENST00000600868 Q6ZRP5 223 aa9.19□□□□□ -0.94
UPF1-211ENST00000600868 A0A096LNI7 61 aa9.18□□□□□ -0.94
UPF1-211ENST00000600868 SCGB1D4Q6XE38 83 aa9.18□□□□□ -0.94
UPF1-211ENST00000600868 C14orf144Q96I85 54 aa9.18□□□□□ -0.94
UPF1-211ENST00000600868 GAGE2BQ13066 116 aa9.17□□□□□ -0.94
UPF1-211ENST00000600868 GAGE2EQ4V326 116 aa9.17□□□□□ -0.94
UPF1-211ENST00000600868 LINC00474Q9P2X8 69 aa9.17□□□□□ -0.94
UPF1-211ENST00000600868 GAGE2DQ9UEU5 116 aa9.17□□□□□ -0.94
UPF1-211ENST00000600868 A0A0U1RRA0 63 aa9.16□□□□□ -0.94
UPF1-211ENST00000600868 SLC25A34Q6PIV7 304 aa9.16□□□□□ -0.94
UPF1-211ENST00000600868 LITAFQ99732 161 aa9.16□□□□□ -0.94
UPF1-211ENST00000600868 IGKV2-24A0A0C4DH68 120 aa9.15□□□□□ -0.94
UPF1-211ENST00000600868 CHTF8P0CG12 524 aa9.15□□□□□ -0.94
UPF1-211ENST00000600868 Q6ZSA8 131 aa9.15□□□□□ -0.94
UPF1-211ENST00000600868 MIR7-3HGQ8N6C7 128 aa9.15□□□□□ -0.94
UPF1-211ENST00000600868 SND1-IT1Q9HBX3 110 aa9.15□□□□□ -0.94
UPF1-211ENST00000600868 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.15□□□□□ -0.94
UPF1-211ENST00000600868 TMEM238C9JI98 176 aa9.14□□□□□ -0.95
UPF1-211ENST00000600868 ADAMTSL4-AS1Q5T5F5 129 aa9.14□□□□□ -0.95
UPF1-211ENST00000600868 SPACA4Q8TDM5 124 aa9.14□□□□□ -0.95
UPF1-211ENST00000600868 C12orf57Q99622 126 aa9.14□□□□□ -0.95
UPF1-211ENST00000600868 DNAH5Q8TE73 4624 aa9.13□□□□□ -0.95
UPF1-211ENST00000600868 PKHD1P08F94 4074 aa9.13□□□□□ -0.95
UPF1-211ENST00000600868 PANO1I0J062 215 aa9.13□□□□□ -0.95
UPF1-211ENST00000600868 C9orf129Q5T035 196 aaKnown RBP9.13□□□□□ -0.95
UPF1-211ENST00000600868 XAGE1AQ9HD64 81 aa9.13□□□□□ -0.95
UPF1-211ENST00000600868 FAM30AQ9NZY2 134 aa9.13□□□□□ -0.95
UPF1-211ENST00000600868 TP73-AS1Q9UF72 201 aa9.13□□□□□ -0.95
UPF1-211ENST00000600868 LINC00518Q8N0U6 118 aa9.12□□□□□ -0.95
UPF1-211ENST00000600868 DAND5Q8N907 189 aa9.12□□□□□ -0.95
UPF1-211ENST00000600868 SPANXDQ9BXN6 97 aa9.12□□□□□ -0.95
UPF1-211ENST00000600868 SPANXCQ9NY87 97 aa9.12□□□□□ -0.95
UPF1-211ENST00000600868 LOC107984156A0A0G2JMH3 177 aa9.11□□□□□ -0.95
UPF1-211ENST00000600868 Q6ZVH6 145 aa9.11□□□□□ -0.95
UPF1-211ENST00000600868 ARL17AQ8IVW1 177 aa9.11□□□□□ -0.95
UPF1-211ENST00000600868 SPANXB1Q9NS25 103 aaPredicted RBP9.11□□□□□ -0.95
UPF1-211ENST00000600868 HIGD1BQ9P298 99 aa9.11□□□□□ -0.95
UPF1-211ENST00000600868 UQCR10Q9UDW1 63 aa9.11□□□□□ -0.95
UPF1-211ENST00000600868 DPH3Q96FX2 82 aa9.1□□□□□ -0.95
UPF1-211ENST00000600868 PLA2G2DQ9UNK4 145 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms